Array 1 28-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOZ010000026.1 Aerococcus urinae isolate Au-31-B94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28 29 96.6 32 ............................T CATCACCCCTTAGCTGATCTCACAAGAGCGAT 89 29 100.0 32 ............................. GAACATATCAGTCTAAATCATGAGGAAGTCGA 150 29 96.6 32 ............................T CATCACCCCTTAGCTGATCTCACAAGAGCGAT 211 29 100.0 32 ............................. AAAGAATTAGGAGGATAAAAACATGCCAGAAA 272 29 100.0 32 ............................. TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 333 29 96.6 32 ............................T CCTTATAGTTACCTGCACAGATTTGATACTTA 394 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 CTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : TATCAGTCTAAATCATGAGGAAGTCGAC # Right flank : GAACATATCAGTCTAAATCATGAGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 122027-123274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOZ010000001.1 Aerococcus urinae isolate Au-31-B94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122027 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 122088 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 122150 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 122211 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122272 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122333 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122394 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122455 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122516 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 122577 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122638 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122699 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 122760 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 122821 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 122882 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 122942 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 123003 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123064 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123125 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123185 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123246 28 75.9 0 ......-....C.......T.T.A...TG | A [123264] ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142225-142739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOZ010000001.1 Aerococcus urinae isolate Au-31-B94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142225 29 96.6 32 ............................T ATATTTTTGATACCTATCTTGATTATGACTGG 142286 29 100.0 32 ............................. GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142347 29 100.0 32 ............................. GACAACTTGATCTCCAACTCAATGGGATCATA 142408 29 100.0 33 ............................. CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 142470 29 96.6 32 ............................T TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 142531 29 96.6 32 ............................T GGTACGAATAACTCCATGATTATCCACCCGGG 142592 29 100.0 32 ............................. GCTGACCTGGAATGACTTCATCCCCGCACTAA 142653 28 89.7 32 ......................-A....T GTTTGATCTAGCAACATCTTTGCCTAATCCAA 142713 27 82.8 0 .................--.......TTT | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 CTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGTCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //