Array 1 44874-45878 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCL01000022.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2698 NODE_22_length_83509_cov_3.9011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44874 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 44936 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 44997 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 45058 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 45119 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 45180 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 45241 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 45302 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 45363 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 45424 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 45485 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 45546 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 45607 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 45668 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 45729 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 45790 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 45851 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62161-64058 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCL01000022.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2698 NODE_22_length_83509_cov_3.9011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 62161 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 62222 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 62283 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 62344 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 62406 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 62467 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 62528 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 62589 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 62650 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 62711 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 62772 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 62833 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 62894 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 62955 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 63016 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 63077 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 63138 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 63199 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 63260 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 63321 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 63379 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 63440 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 63501 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 63562 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 63623 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 63684 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 63745 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 63806 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 63907 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 63968 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64029 29 93.1 0 A...........T................ | A [64055] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //