Array 1 7054-5610 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL647036.1 Nonomuraea candida strain NRRL B-24552 Doro1_scaffold88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 7053 28 72.4 126 CG.......T...C...T..-......GA AGTCAGCGCTGGCATGTTCGTCGGCAACCCCAGCAAACGCATCCGCGACCGCATCTGGAAGCTCCTCGCCAACCGGATCGGCGACGGCCAAGCCATACTCGTCGAGCCTGCCTCCAACGAACAAGG A [7046] 6898 28 79.3 73 C.G..........-......C.A..A... CTGGTACCCCGTCGACTTCGACGGACTGATTCTTTCTGCCCGCAACCACCGTTGAAATCCCAGCTCAGCAAGT TA [6891] 6795 29 96.6 32 ............................T CCTCGGGCAGCGGGGGCAGGGGGAGAGCCCAC 6734 29 100.0 32 ............................. AAGTACGGGGTTGATCCCCTCTGGGGAGACTT 6673 29 96.6 32 ............................T TCGGGCTGAACGACATCGCGCGGTTCTTCGGC 6612 29 100.0 32 ............................. CAGGGCGACTTCATCGCCATGGCCGGCTACGC 6551 29 100.0 32 ............................. CCTTCAAGCTTCAGCACGTCGCCGGCGAACTT 6490 29 100.0 30 ............................. CTGCTGGCGTCCACAGCACCTGGAGCCCGT 6431 29 100.0 32 ............................. AGGCGGCGGAGGATGGCGGCGAGGAGCATGGT 6370 29 100.0 32 ............................. CGCAAGGGGTATCAGTGGGAGGTGGACTGTCG 6309 29 100.0 32 ............................. AAGAACTCCGGGCGAAAATCCTCACCGAGGCA 6248 29 100.0 32 ............................. GAAATACGAGCCTGCACCAATCGCGGGTGCGG 6187 29 96.6 32 ............................C TCGGCATCACCCTCCGCCAGGACTCCCGGGCC 6126 29 100.0 32 ............................. CTGGAGACGAGCCTGAACGCGGCGGCTGACCA 6065 29 100.0 32 ............................. AGGGCGCACGCTCGACCGTGCGCGCCCGGCTC 6004 29 96.6 32 ............................C TCCTACGGCCACCGGGTTGAGCAGAGGCTGGC 5943 29 96.6 32 ............................T TCCTGATCGAGACTGCCTTCCTGGCCGATGGC 5882 29 96.6 32 ............................C CAGACTCGACCTGGGGCGGCCAGGTGCAGAGA 5821 29 100.0 32 ............................. ATCGTCCGTGCTCGGTCGGCATCCATGCGCTT 5760 29 96.6 32 ............................C CCGTCCCGGACAGTGGCCAGGCGGTCCGGCAT 5699 29 100.0 32 ............................. CCCAGCCAGAAACGGACAGCGTTCACCGTCCG 5638 29 93.1 0 ........................A...C | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 22 29 96.4 38 GTCGGCCCCGCACGCGCGGGGATGGTCCG # Left flank : ATCTGCCACGCCGTCATCGTCGGCCTGGGCGCCAGCCCCGGCCTCGGCTTCGTCCACACCGGCTCCGCCACGTCCTTCGTCATGGACATCGCCGACCTCTACAAGGCCGACTACACCATCCCCCTCGCCTTTGACCTCGCCGCCCAAGGCATGACCGAAGAACGCGACGCACGCCTCGGTCTGCGCGACCGCATCGCCTCCGACAAACTGCTCGGCCGCATCGTCTCCGACATCAAATCCCTGCTCTCACCCGACAGCACCGACATCCCCGACATCGATGTCAACGAACTCTGGGACGACAAGGTCGGCACCGTTACCGGAGGCGTCAACTGGGCCGGAACCGAAGAGTTCCCCGACGATCCTTTGTTCGTCGAGTTCGCCCAAGCCTCCATGGGCCAGGACCACATCGCCGTCATCGGCCCCGACTTCGATAAGCCACACCCAGACGAAGCAGACGACACATGACCGTCATCGTTCTCGTGGCCGCGCCTGAAGGGCTA # Right flank : GCGAGGTAGGTCTCCGTTCTGCGTGGAGGCGTCGGCTCCGCACCAGGGATGGTCCCCGTTCCAGACGGACCACAGCAGCAGCAGCCAGCTGGCACGTCGCGTTACGGAATATGCAGGAGTGCTGCGCCCGATCACGTGATGGTCGGCTTTGGCTCGTCGAGGAGGACCAGTGCGGTGATTCGCAGCTCCATGTCTTCGGTTCGGCTGGTATCCCGCCAGTAGTCCCGGTCCTCTTCGGCCTGCTCACGGGTGGCGCGCATCCGCGGCGTCATCCAGCCGGAGCTGTCGCCGATCTGGTTGGCGTCGACCACGACGTACCCGGCTACCAGCGCGGCGGGCGCGGCCTGCTCGGCGGCCGGAGCGGTCTGCTCGGGGATGGTGATCGTCATCGGGTGACCTCCTGGTCGTTGGTGAGGGGCTGGCAGGACAGGAGCCGGATCAGCACGTCCTCGCGGCCGGCCTCCTCGCACGAGCGGCAGACGGAGATGTCGCTGGTGCCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.51, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16673-19744 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL647036.1 Nonomuraea candida strain NRRL B-24552 Doro1_scaffold88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 16673 28 100.0 33 ............................ TCAGCTCTTCGGCGCCCTGCTGCCCGCCCTCCA 16734 28 100.0 33 ............................ GACGTATGGAGAATGCGCCTGCGGGTGCGGTGA 16795 28 100.0 33 ............................ TCCGGCGCACATCATCCGGGCTCGCGCCGGCCG 16856 28 100.0 33 ............................ GCTCCGCATCCGCGAAGAAGCCCAGCGCCGCGC 16917 28 100.0 33 ............................ TCGTGTTCGGCCGGAAGGACGACTCCTTCTCCG 16978 28 100.0 33 ............................ GAGCTAGTCCTTGCTGTGGACATGCGGTGGCAT 17039 28 100.0 33 ............................ GAGGACACCCGGCCGGACGCCGAGGTGCGCCCA 17100 28 100.0 33 ............................ TTGGCCGGGCATCGCCCACCACGACTCCGAGAC 17161 28 100.0 33 ............................ GCCGCCCGGGCCGCGGCCGCCGAGGACCCCCGC 17222 28 100.0 33 ............................ CCAGATTCGCCAAATCGCTAGGCAAGTCGTCGC 17283 28 100.0 33 ............................ GGTCGATGCGGACGCGAAGGGCGCTGTCGGTGA 17344 28 100.0 33 ............................ GTGATCTTCACGGCGGTCGGCTGGGTCATCGCC 17405 28 100.0 33 ............................ GCAGCGGCTCGACAAGGTCGTGGCCGACCCCTT 17466 28 100.0 33 ............................ TCGCTTGCGCCGGTACTCCTGAACCTCGTCGTC 17527 28 100.0 33 ............................ GCAGGAGTACCAGCACCTCGCCACGCAGGGCTG 17588 28 100.0 33 ............................ GCCCGCGGCATCAAGGTGTCAGGAGACGGGCGC 17649 28 100.0 33 ............................ TCCACGTTGCCAATCGACGTATACCGGCGGATC 17710 28 100.0 33 ............................ TCGGGCTCTCGCTGTCCGTATGCGTCATGCACC 17771 28 100.0 33 ............................ GCAGCCATGACCCCGGCGCACCCTGCGGGCGCG 17832 28 100.0 33 ............................ GCTGCCGGGGTGGGCGGCCTTCCAGGTGGACAG 17893 28 96.4 34 ..........................T. GGTCACCTACGTGCCGGCCATCGCCAACATCAGC 17955 28 100.0 33 ............................ CCCCGAGTGGCAGGCAGATTCCCTGCTGGTCGA 18016 28 100.0 33 ............................ GCCTCTGCCTCTAAAACGTCGCGACCGAAAGCC 18077 28 100.0 37 ............................ GGGATTCGAGGCAGCGTTCGTTCTACCTCATGAAGGC 18142 28 100.0 33 ............................ GCCGGATTCCCTTAAGGAGTCGCGAGGCCAGAC 18203 28 100.0 33 ............................ GTGGGTACAGCGATATTTCAACCCCGCCGCCGA 18264 28 100.0 33 ............................ TCCGGGCAGGGTGTGGCTGTCGTTGATGTGGCC 18325 28 100.0 33 ............................ GCAGATCTCGCTCACCGACAGCCCGGAAACCGC 18386 28 100.0 34 ............................ AGACCAAGAGCTGGGCTGACCTCGGATTCGAGGA 18448 28 100.0 33 ............................ GCGAACTTGCCAGTCGGCTCCCCGCGGGTCACC 18509 28 100.0 33 ............................ CAGGTCCCGGATGGAGAAGATGTCCTTCGTCGG 18570 28 100.0 33 ............................ GTTCGCACCCGCGAGCAGCGCGCGTTCGCCGGC 18631 28 100.0 33 ............................ GACCTCGCTACGGCTATGGACGTGGTCCGCTCG 18692 28 100.0 33 ............................ GGTGTACTTCGATTCGCCTGGCAAGGACACCCG 18753 28 100.0 33 ............................ GCTGCCCGAGGTGCACTTCCGGGCGATCGTCGT 18814 28 100.0 33 ............................ TCGGCATCATCATTCTGTGGCTGGTGAAGCAGC 18875 28 100.0 33 ............................ GTAGAGCAGCCGGTCGAGGACCTCGCGCGGAGT 18936 28 100.0 33 ............................ CCGCTTCACCGTCACGACCGTCCCGCAGGTGGA 18997 28 100.0 33 ............................ CTGGGCCATGGCGGATGCGGCCACCGCCGCCAC 19058 28 100.0 34 ............................ AGCTGGAGGTGGCTCGGCCACCGCCCCGCCCTCG 19120 28 96.4 32 ....T....................... GGCGATCATTGAGGCGGGCCTGCCCGCCCGGG 19180 28 100.0 83 ............................ TACTCGATGCGGCTGGCCGAGTGGCTGGGCGGGGTCGGCCCCCCGGGTCCGTTCGCGCCGCCCAAGACCCCCGCCACGATCCT 19291 28 100.0 33 ............................ TAGCACCTCAGCCAGAGCGGTCCTCCTGGATGG 19352 28 100.0 33 ............................ GCGGCAGGCGCGCGCCGGGCGGATTCCTCACTG 19413 28 92.9 33 ......T.................A... TTTCAGACACGCCGCCCTAAAGGGGACGGAGAC 19474 28 96.4 33 ..........T................. GGGGAGTCAGCTCCGCCATCGGTTGACCACCTT 19535 28 100.0 33 ............................ GCGATGCTCCCGACGAGCTGCCCGGCGATGAGG T [19549] 19597 28 96.4 33 ..........T................. CCGCGTCGGGTTGGTACTCCGGACGGAAGCCAC 19658 28 96.4 33 ........................A... GGCGCGGGCGCGGACCTTTCAGGAGGCGCTGCA 19719 26 85.7 0 .....--........A......G..... | ========== ====== ====== ====== ============================ =================================================================================== ================== 50 28 99.2 34 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : CGCCCCCTCGGCGTCCACCCGCTGAAACGCCGGCGTCGCCTTCCCGCAATCGTGGATACCGCACAACCAGGCAAAAAACAGCCTTCCGCGATCCCCTGATAGCGTATTCAACGCCCGCTTTGTGGAGGGTGCCAGATAGTTGTCCCAAAGCTGCTCCGCCACCGCTGCGGTATCCAGAAGATGAGAAACCAGAAGATTAGTTCTACCACCCGCCTTCTGGCGCGACTTGCCCCAAAGAGCACCGAGATGCCGTGTTACGACCGGTTCATACCCAAACGCTTCATGCCACGTCATCGCACCGCCTTCCATCAACGCGAACCCTAGATGCCGTGACTGACAAAACAGGGGCGTGCCAGCACACTGCGATATCGTTCACCTACTCCACGGCGTTAGCAGTTCCGAACAGTTCAGCGAGAAGGCGTCAGATGAAACGACCGCCCACCGTTTCGCAACCGAAGGAAAACCGCACCATCTGCCGATGAACGCGCAGGTGAACAAGT # Right flank : CGCCGATGGAAGTCCCGATCGGCATCCGCGCTCCGTGTGAACGGACGCGAGCTCCTCCAGGTAGATGGCCATGACGATGCAGATCCTTGGCCATTCGAACTCCAGGTGGGCGGACACTACGCGTCCTTTTGGACGGCCGGGCCTCACGGCATCGCGTACCGAGTCCAGCGCCGCCTGGCGGAGCCCGAGGCGCCTCGCCGTCGTTGGCCATGCCTGGCCGTGGCCCCGCGTCCTTGGCCAAGCAGGCCGAGGTCGAGGAGAACTACGTGTTAGCGGTCATCAGGACTCTTGTCCGTCTACCGAAAGAAACTCGCGTTTGTCCCAATCGGCCTGTTCCTGCCCTAGACACCCACCGGCATCTTTCACGTCTTCGGTCCATCAAGCGCCACGAGGTCGTACTGCAACACCGTCCGGTCGCCGGGATACACCTCGACCCGCATCCCGACCAGCCGCCGGCCCACGAGCAGCCAAACCACTTGCTCAAGTACGGGGGTTGCCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //