Array 1 89914-89153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWC010000014.1 Escherichia coli strain JS104-2 NODE_14_length_90042_cov_44.145226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89913 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 89852 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 89791 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 89730 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89669 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 89608 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89547 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89486 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89425 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89364 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89303 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89242 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89181 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83136-84202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWC010000017.1 Escherichia coli strain JS104-2 NODE_17_length_84403_cov_43.914626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83136 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 83197 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 83258 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 83319 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 83380 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 83441 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 83502 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 83563 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 83624 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 83685 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 83746 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 83807 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 83868 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 83929 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 83991 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 84052 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 84113 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 84174 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //