Array 1 163051-160520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMX01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163050 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162989 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162928 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162867 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162806 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162745 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162684 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162623 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162562 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162501 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162440 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162379 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162318 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162257 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162196 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162135 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162074 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162013 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161952 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161891 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161830 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161769 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161708 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161647 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161586 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161525 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161464 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161403 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161342 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161281 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161220 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161159 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161098 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161037 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160976 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160915 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160854 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160793 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160732 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160671 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160610 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160549 29 93.1 0 A...........T................ | A [160522] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181173-179558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMX01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181172 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181111 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181050 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180989 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180928 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180867 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180806 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180745 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180684 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180623 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180562 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180501 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180440 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180379 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180318 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180257 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180196 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180135 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180074 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180012 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179951 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179890 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179829 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179768 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179707 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179646 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179585 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //