Array 1 225165-224658 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAP01000004.1 Pectobacterium odoriferum strain Q166 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 225164 28 100.0 32 ............................ TGACGGAACGGGCAGGGTTTTACTCTCTGATC 225104 28 100.0 32 ............................ GTTAACTCTCCCAGCGTCGGGTGAATTAATGT 225044 28 100.0 32 ............................ AAATACCGGATCGCCTGTGCGGCTCCTCCGAT 224984 28 100.0 32 ............................ TTCCGCGCAACAAAGTGGCTCAACTAAAGGCC 224924 28 100.0 32 ............................ TGTTCACGTGATAAGTTTTCAGTAGATGAAGT 224864 28 100.0 32 ............................ AACATCGATGATCTGCCGGACATGCCGGAGAT 224804 28 100.0 32 ............................ GAAGTGTCGAAATGGTTACGAGCGAATCTGGA 224744 28 96.4 32 ...........T................ TGGCACTGGTCCATAGGCGCTGGAGAAGATGA 224684 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAATCCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 233742-235150 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAP01000004.1 Pectobacterium odoriferum strain Q166 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233742 28 100.0 32 ............................ GATACGCTCGCCAATCTGGCGACGAATGGGTT 233802 28 100.0 32 ............................ TGTATCAGGATGCAACGCGTAGCGATGAGTTA 233862 28 100.0 32 ............................ GTACGCAATGGCTGCGTGATCGCTTGCTAAAT 233922 28 100.0 33 ............................ CTGTGCCTTCCAGGTCGAGGGAGCCACCGACAG 233983 28 100.0 32 ............................ ATCACTCACGCTGGCAAATCGCCTGTATCAGG 234043 28 100.0 32 ............................ ATCTGGAATCATTGGTTTCTCGATGTTGTCGA 234103 28 100.0 32 ............................ TGCAAATAGCTATCATCAGCGTCACCAAAACT 234163 28 100.0 32 ............................ CGTCGCACTTGCTGGCATGCTGGACGTCATCA 234223 28 100.0 32 ............................ ATCGTGGATGGACAGGGGCGAACCAGCCAAAT 234283 28 100.0 32 ............................ TCAAGCCCTGTCACATCAGACGATACGGAAAT 234343 28 100.0 32 ............................ AGTATCAAACGTTTGGTTTTCCCGAATACATC 234403 28 100.0 32 ............................ GTTGGCACCTTGTTAGCCCATGACTTCGTTGC 234463 28 100.0 32 ............................ TGAGTCGCGCAGGTCTGCGTTAACAGGTCGCT 234523 28 96.4 32 .................T.......... TGTGTGAGATAGAAATGCATGTCGCCTGTGTC 234583 28 100.0 32 ............................ AGTAGAGGCATTAAAGGTCATGGACGCATGGG 234643 28 100.0 32 ............................ TCGCGTGCTGACTCATGGCTGCGATCAAAATC 234703 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 234763 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 234823 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234883 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 234943 28 100.0 32 ............................ GCGCGATGTTACATCCGCAGCGTAAAGTATTC 235003 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 235063 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 235123 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 243468-242480 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAP01000004.1 Pectobacterium odoriferum strain Q166 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 243467 28 100.0 32 ............................ GGACGTACTCATCGCTAGCACACACATTAAGA 243407 28 100.0 32 ............................ TGTGTCAGCAGGGCCTTTCCCTTTGTTTACGC 243347 28 100.0 32 ............................ GCTTAGCGATACGATCAAGGCTTGCGCCGATG 243287 28 100.0 32 ............................ CTGCCATTCGTTCCCCTTTAGCAATTGGACGG 243227 28 100.0 32 ............................ CATTCCTGCGCCACCATTTTCTTTTGTTTCTT 243167 28 100.0 32 ............................ AAATGAACAGATTTTCTCGCGCGCGACCTTCC 243107 28 100.0 32 ............................ AATGAATTATCTAATTGATGATATTGGCGTTG 243047 28 100.0 32 ............................ ACCATAGCCTTTCGGCTGGCCTGCCATCCCAT 242987 28 100.0 32 ............................ GTGTCAGCGTCACGCAAAATTGCGAAATTATA 242927 28 100.0 32 ............................ ACCAGCATCGCGGGTTGTTGTGAAGTTCTGGA 242867 28 100.0 32 ............................ TGGCGCAATAGTCGGCTGTGTACCGGACCGTA 242807 28 100.0 32 ............................ AGCATCAATGGAGCGCATGAAATTAACTGACT 242747 28 100.0 32 ............................ GCTGGTCCGCGTCGAACTGATTCTGCAGCAGA 242687 28 100.0 32 ............................ TATCCCGTAATCACAGCAGCAGGCTTTTACGT 242627 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 242567 28 100.0 32 ............................ GGTAGGTGAGGTTGCGCGGCAAGTTGGCGTCA 242507 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //