Array 1 296-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000041.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 295 36 100.0 34 .................................... GTAGTTATATTGTTTGTAATCAGCCATTTTTAAG 225 36 100.0 35 .................................... GTCGGTAACTCGATACGGGTTTTGAACCAGCATAC 154 36 100.0 34 .................................... GCCAAAATTTCCACTTTTGCGGCGGTGGTAATCG 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 100.0 35 GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Left flank : GGCAAGAACGAATGGCAGCGCAAACAAACATGACCGTAGGCAATCAAGCGCACGATACATTCTATAAAGAATGGAAGGCAGCCCTGCAAACTGCCGCAGAAAGCCCCGATTTCAGCGCAAAGCAGAAAGCCGAAATCGCCGCCGCGTTTGACGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGGCAAACGCCCCAAAGAGCTGAAACCCATCTTGGAGAAACTGAGCGGCAAATAGATTTTCATCTTTGTCAAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACAGTTAAAAATCGTTGTCGAATGCAAAGCAGACGGCTATAATCCGCAACACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCTAACTTTTCTTAACTATATAGAAGATTGAAAATAATGAAATTTTTTGACTGAGTGCA # Right flank : CAAGTTTCTATCTGTTAACAATGACGCAGATACGTCGGAAGACTTGCCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1770-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000049.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1769 33 100.0 34 ................................. TATATTAGGTCTTGGTCTAACATTAGAACCTGAA 1702 33 100.0 33 ................................. AAGTATATTAGCAAACATATCAACAGCCGCCTG 1636 33 100.0 34 ................................. TGAGCTTGTTTATAAGCTCTTGCGGCAAAATCCG 1569 33 97.0 33 A................................ GGTTTTTGCCTGCTGTTCGCGTTGGTCTAGCCA 1503 33 97.0 34 G................................ TACCGCTATCTTTCGGACGCTGAGGCTATGCTGG 1436 33 100.0 38 ................................. TATGATACCGAAGTTTTATGGCCGCGAGGGCTGCGAAT 1365 33 97.0 33 A................................ TATGTAGGTATGGGGTATCTTCAAGCCTTTGAT 1299 33 97.0 33 G................................ ATTACTTCGTACTTGGTCTTGTCGTTTGTGCGG 1233 33 100.0 34 ................................. TATTAGTCCACGCAGATGAACGTCTATCAAGCGG 1166 33 97.0 33 G................................ CAACAAATTCAAGCTCGTAACTACACAAGCGCA 1100 33 97.0 33 A................................ GTTGGCATTCGTCAACGACGATAATCGCACCCG 1034 33 97.0 32 G................................ TGATTCTCTTGGTTTTGATTTTGCTGCCCTGT 969 33 100.0 34 ................................. CATTAAAGGTAGTCAGTCGAAAACCATAACCGCA 902 33 97.0 32 A................................ TGCATTTGCCATTGATAAAAACGGTCTCCAGC 837 33 97.0 32 T................................ AGCCGTACAAAGACCCTTACGACATGTACGAA 772 33 100.0 34 ................................. ATGAGCAAGCCGTATTCAAGCCGTACAAAGACCC 705 33 97.0 32 T................................ CCAATCGGTACCAACCGATTCACCACACGGCA 640 33 97.0 34 T................................ CGTGAATGCTTCCGCCGGTATAAGCATCGGTGGA 573 33 97.0 32 T................................ TTGTTCGGCCAACTCAAAAGCCGCTAGATCTG 508 33 100.0 35 ................................. TATGACTTCGAAGAAGCGGTTAACGCAGGCTTGGA 440 33 97.0 32 A................................ TATCAACCTTTTGCCTGCTTTATCTTTCCATA 375 33 97.0 32 G................................ GGCTGGTGGCGGTAGCAATCAAGGTAAGAAGA 310 33 100.0 34 ................................. CGTCCTGCGTGATTGCGCCAAGTTGGGCGTATAG 243 33 97.0 33 G................................ TGAAGCAATAGTCGAAGTTTTGAAAGACGGCAA 177 33 97.0 32 A................................ GATGCAGAATCAACACCTGAAACCGCAGAAGC 112 33 97.0 33 G................................ AGGGTTTGAAATTAAAATTTCCTATGACTTTGT 46 33 97.0 0 T................................ | C [15] ========== ====== ====== ====== ================================= ====================================== ================== 27 33 98.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TCA # Right flank : CTCTTAGAGTAAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1510-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000028.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1509 33 97.0 33 T................................ TTTGATACTACTCAATTTCACAAACAAAAAAGC 1443 33 100.0 36 ................................. TGCTTTTAGCTGCCTGACAATTTCTTCAGCCGTGAA 1374 33 97.0 34 A................................ GCCTTCGGGTATATCGAAGTAGTTTATTTTTTCG 1307 33 97.0 33 T................................ TGATTTGAAACCAAATTCAACACTTGCACCCAC 1241 33 97.0 33 A................................ CTGCCCGCCTGCCACGTGGCGAACGTCCCCGAA 1175 33 97.0 33 G................................ ATCTTGATAACCCAACATCCCCGCCTGATAGAC 1109 33 97.0 34 A................................ CTAGTTTTTTAATATTAAGGGTAGCTGGAAAGCC 1042 33 100.0 33 ................................. AAGATGCGTGTCGAATTGATGCTTTAGCTGCTG 976 33 97.0 35 T................................ AATAAAATCATGAACCTCTAAATCAGTTTTTAGTT 908 33 97.0 33 A................................ CATGATATACTTTGACATATCAAGAGCGCGCTT 842 33 97.0 34 T................................ TTTCAGACGACCCATGGGGTCGTAGTCGTACAGG 775 33 100.0 35 ................................. CCGTCTGAGCAGGCCTTGAGACAAAAAGGATACGA 707 33 100.0 33 ................................. ATCGCAATATGTGTGCTGACCTGCACCTATTTT 641 33 97.0 33 G................................ GCCACGTGGCAGGGGGTGGGGTAAAAAACACAC 575 33 100.0 33 ................................. TGCGATATGTCCAGTCCTATTGTGTTCATGGGA 509 33 97.0 32 T................................ TGCCGATTCGTGTATGAAACCGCTCTTTTCCG 444 33 100.0 33 ................................. ATTGATAGGGGAAAAGGTATCTCAATTAATTGC 378 33 100.0 34 ................................. CCAGCTTGAATCACCCGCGTCCAAACATTGTGCG 311 33 97.0 33 G................................ TTCGGCAGACTTGTACAGCCCATACACGCTTTT 245 33 97.0 34 A................................ TTTGATGATTTTTGTTGTTCCGCAGGCGTTTGAG 178 33 97.0 32 A................................ TGTACCTGATACCTATCGCAATAGCCATGCTT 113 33 97.0 33 G................................ GGCATGGTTGGTCTGTTGGTTATTCAACATACG 47 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 98.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGATATTGCGCCCGACCAATGGGTTGTTTTAAAAGACAAGCTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTATTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCCGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGCAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATTGGGGTTGTGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CCAGACTGAAGCCTT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34-350 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000011.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 34 35 100.0 37 ................................... CGTTTGCAGTTCGTTATAAGTTTCAAAGGTAGGAAGG 106 35 100.0 33 ................................... CCAAATAACATCGACGAAGGGAAACGTATTCCA 174 35 100.0 36 ................................... CTTTTTTCGGGTTTTCCTTGAAGCCTCTCTGTTTCA 245 35 94.3 36 ....................C.A............ TTCCTTGGCAACCCGGTCATAACCATAGAAGCCAAA 316 35 80.0 0 ...A...............GC.......G..TCA. | ========== ====== ====== ====== =================================== ===================================== ================== 5 35 94.9 36 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGA # Left flank : TGAACAAGCTCCTCAATAGCCTCTAAATACTCAG # Right flank : ATCTTTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTCGCGCTTACAGTTTGCCCACGCCGCCCAAGATGATGCCTTCGGGCAAGGCGGGTTTGCCTAGGGCATGGATTATGCTGCTGTTGGGCAGGGGATAGCAGCGTCAATTACCCAGCCGCCGCAAGCCCCGATTTCAGCGCAGAGCAGAAAGCCGAAATCGCCGTCGCGTTTGCCGTCAAAAAGATGGAGTAGGCGTATAAAAACTGGCTGACCGACAAGCGCGGTAAAGAGCTGAAACCCATCCTAACGAAGCTGCGCGGCGAATAGATTTTCGGCTTTATCGAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACGGTTAAAAATCGT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 3544-3310 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000011.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 3543 24 100.0 45 ........................ GGGGATTAAGACCTGAATGAAAAGTAGATATAAAAATACGATTTC 3474 24 100.0 46 ........................ GGGGATTAAGACTGCGTCAGCCCGTGCTTTTGGCGCAATGCCTTGA 3404 24 100.0 47 ........................ ATGCTTAAAGCTTTTCAGACGACCTCAAGCCAAGGTCGTCTGAAAAT 3333 24 91.7 0 ..........C........T.... | ========== ====== ====== ====== ======================== =============================================== ================== 4 24 97.9 46 GTCGGAAGACTTGCCCCACGTATC # Left flank : GACCTCGTGTGCATTATCGATTACAAATCCAACCATCTGGGCGACAACGCCGAAGCCTATACGCAACAAGCCATGAACGCAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTACTTCAAACTGCGCGGCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTACGCGGATTGGACGGCACGGACAACGGCATCTGGCAATGGGACTTGGATACCGAGTCCTTGGCGCAATGGCTGTAAATGGAAGCACAAAGGTCGTCTGAAAATGTTAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGCCTCACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCGGCTCTTTTCAGTTAAGATTTTATTAAATAATGTTTTTGTTGGTTAAGGAAAAATGCTAAACTTTCTTAACTATATAAAAGACTGAAAATAATGGAATTTTTTAACCGAGCGCA # Right flank : GGGGATAAAAATCAAACAGCCTTGATGGTTTTGTTCCATCAAGGCTGTTTTTGCGTCTGGCGTATTGTCAAGCGGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACCGTTTCTTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCGGGCGGAAGGTCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGCTCGTGCCATGAAAGCCGGGGCGGGACACCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCATAAGCTGGCGCAGGAAAACCGCCTGCGTCAGTTCGGTTTCCCGCAAAATCCTGCCTTTTTGCTGGATACGCAGAGGCGTCAGCAGCTGAATATGCGCATGGGCGGGATAGCGTTCGGGCAGCCTGATATGGTTGTCGTGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 40-6545 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDX02000006.1 Neisseria mucosa ATCC 25996 N_mucosa-1.0.2_Cont5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 40 33 97.0 33 T................................ AGGGTGTGGGAGGCGTTGAGAAACAGGCTCCCT 106 33 97.0 34 T................................ GCAAAGAGGCTGTTATATGCATACCCGATTAGTT 173 33 97.0 32 G................................ CAAGCCTTGGATTTTGCGAACATTTTCATAAT 238 33 97.0 35 T................................ TATATTGCATAAAAGTTTGAGGAAAAATGACACAT 306 33 97.0 34 G................................ TCGGTGTGTGAGGTCATGGATGATTTCGTTCAGT 373 33 100.0 32 ................................. TCCGCCATATCGGGCATGGCTTTGGCGATGGC 438 33 97.0 34 G................................ AGGATGCGACAAGCCAAGCTCCGCATCGCCCTGC 505 33 97.0 34 G................................ GCCTGTTTTAGATACGGCCTCATCATAATGAATA 572 33 97.0 35 A................................ CGCCTTTATCGACCAAATCAGCTTTTCATTCCATG 640 33 97.0 33 A................................ AGTTTTTAGAACATGGCTTTGAATGCAAAGAGT 706 33 97.0 36 T................................ ATTTGCTCAAGCGTTGCCTGCATTGCCAAAAGTATG 775 33 97.0 33 G................................ TACATCCACCGGAGGGTAATAAAACAACCCGTT 841 33 97.0 34 T................................ TGGAAAATGTCGCTGGTCATCCGCCGTATCATTG 908 33 97.0 33 A................................ AATTTTTGTTTAACTCACTAAAGGAAAACATCA 974 33 97.0 34 T................................ AGACGCAGAACCAAGGCAAACCGACCGTAACGAA 1041 33 97.0 35 G................................ CCGTGACTGAACAATGTAAACGCGGGTAATTGTCA 1109 33 97.0 34 T................................ AAGTGCAGTGTATTGGATAAGGAAACACATCATG 1176 33 100.0 35 ................................. ATACGAAACTAGCGTTACACCAAGCCCTAAAAGGA 1244 33 97.0 38 G................................ AAAACATTTTTTTTCGCTCGCCGCTGGGCAGAGGTTGG 1315 33 97.0 35 G................................ AAAACTTGCCTTATTGAAATTTATTCTATTAAAAA 1383 33 97.0 40 A................................ CAAAGTTCGTTGCCGTGCTGCCCGAAGGCGCGCCCGATTA 1456 33 100.0 33 ................................. CAAAGGTACCAGCCATTAAAACACCACTTTCGA 1522 33 100.0 34 ................................. CGTTCAATTCGACCAACATCGTTTCTCGCTGGCC 1589 33 100.0 32 ................................. TATGGTTACGGGTACGGTTGAGGCGGAGCGGA 1654 33 97.0 32 G................................ TTTAGAAATATGAGATTCATAACCCCTACTTT 1719 33 97.0 35 T................................ AGCCATACTAAAACAGACAAAGCAGATTCAAAGCT 1787 33 97.0 34 G................................ TATTCGGTTGTACGAAAAGGGGAAGCAGATAGCC 1854 33 100.0 33 ................................. AGTCTCGGGAAACGGGGGACTTCCTATACCCGT 1920 33 100.0 34 ................................. GAAAGTACCCGACTACGTCGCCGAGCTTGAAACA 1987 33 100.0 35 ................................. TTTTTGCTTATCATCCTCTTTCGGCTTGTCGTCGG 2055 33 97.0 34 G................................ AGCCCATGCTTGACCAGCGAGAGCCAGAGGGACG 2122 33 97.0 33 G................................ CCTAGTCTTAATGAGATTTGCATTTGATTCATT 2188 33 100.0 34 ................................. TAAATCTATGCCAAAATCATCGGCAAAAGCTTTA 2255 33 97.0 34 G................................ TTTATCGTGGGTTTATTGACTGAACATCATGATG 2322 33 97.0 34 A................................ GCCTGTGCGCCTAATGTTTCGCGTATTGCTTTGT 2389 33 100.0 33 ................................. GGTACCAGCTTTGTTGTTGTACACGTTCACGCT 2455 33 100.0 33 ................................. GCATGATGGCGACTATTATCAGTTTCGGGGGCT 2521 33 97.0 35 T................................ TGTATGTCTTGGCTCGCTCTTGGTCGTAGGGCAGG 2589 33 100.0 34 ................................. TTAAAAACGATGCTCCTACTGCAAAAATAACCCG 2656 33 97.0 36 T................................ ACGAATATAAAACAAGGTTTTGCTTGTTAACAAGTA 2725 33 97.0 35 T................................ ACGAATGTCATCGCGTCCCGCGTGATGTTTATTCG 2793 33 97.0 32 G................................ AGCCGTGCTTTTTTGTTTTTGATGTTTGGGTC 2858 33 97.0 33 G................................ ATGCGAAGACCTGCGGCGTGGGTGGCAAGATTT 2924 33 97.0 34 T................................ GCGCGTCCATTCGTGGGTTTTGAAAAAAAACGGC 2991 33 97.0 32 G................................ CGATTGATTGGGTCGGTTGGAATTGCAGCTCC 3056 33 97.0 34 G................................ AGCGGAATCATCGGTGTAATCAACAATATCTTTA 3123 33 97.0 33 A................................ ATCATCCACCAAAACACATGGGTAAATCTTCCT 3189 33 97.0 33 G................................ TGCGACAATTCCAGATGACCCGCAAACTGTTAT 3255 33 97.0 33 T................................ ACCCGATGAAGAATCTGATTTCTTACCATTACC 3321 33 97.0 34 A................................ ATACTCATCATGAATAAATTGCATGTAATGACGT 3388 33 100.0 35 ................................. ATTTTAGTCGAGCTATATTTTATGTTTCATAGATA 3456 33 97.0 35 A................................ AAGGTTATAGATGGCAAATTGACAAATACAACGGG 3524 33 97.0 32 A................................ CCGCTCGCCCTATGCCTCGTCGGTTATGGCGT 3589 33 97.0 33 T................................ CACAACTGTTTTTTGTCTATGGTGGTACGGATG 3655 33 97.0 34 A................................ TTTAAAAATCAGGAAACGCAGTAACCGCCCTTCA 3722 33 97.0 34 G................................ CGCCATCTGCTGTTTCAGCTTGTCGATAGCCGAT 3789 33 97.0 32 T................................ CTGAAGGTTATGACAAAGTTGCAGGATACGTC 3854 33 97.0 34 T................................ CCGACATAGCAATGCAACTGGCCTACATTCTCGG 3921 33 100.0 34 ................................. CGGAGTAATATTGGCTGTATCGCAGCACTCCCGG 3988 33 97.0 33 G................................ AGGTGGTCGCAATGGTTACAAATATGCCTATCA 4054 33 97.0 34 T................................ TCCGTCAGTTTTATGCGAGGTTATCGAATGAGCA 4121 33 97.0 34 A................................ GCTGTCTGCGTAGATGCAGGCGACGACACGCATT 4188 33 97.0 33 G................................ ATAGACACCATGCAGATTTGGGCAGGGCGCGGA 4254 33 97.0 33 A................................ AAGGAAGAAGAATAAGGATTTGATATGTTGAAC 4320 33 97.0 33 G................................ AAAAAACCTATTGCATTACCTCATTTAGCGAGG 4386 33 97.0 32 T................................ GATTTGAGATTATATAAATCACCATATAAATA 4451 33 97.0 33 A................................ ATTGGTAAAAACCATCTCGAACGGTCAATCTTT 4517 33 100.0 34 ................................. TGAAGCGTCTATACACGTTAAATGGCGTTCCTAT 4584 33 97.0 33 G................................ CTCGAAATTGCCACACCTGCAATAGACCGTAAT 4650 33 100.0 33 ................................. AGGTTCATTTTGTTTTCCTTTACGAAATGTTGA 4716 33 97.0 33 T................................ TTCTGTCAGATGGGGCTTTGGCGGTTCGGACGG 4782 33 100.0 33 ................................. AGCAGATGAAAGAATGGCTGCAAGAACACGAAG 4848 33 100.0 34 ................................. TTTATGGATACCCCTTGACGCTAACCCACCCAAA 4915 33 97.0 34 A................................ GTGTGTGAAATGGCAAACACGACCGACTTGATAA 4982 33 100.0 33 ................................. AGGATGCCAGCCGATTTGATTGGCTTGCTTGGA 5048 33 97.0 34 T................................ CCGACGGGAGCAGGTGAACTAATACCAAACCCAA 5115 33 93.9 33 A...A............................ CTTAAAAATAAAGGTCGTCTGAATTTCAGACGA 5181 33 100.0 33 ................................. CATGTTTTCACGGAGGACTTGCCAAAGCTGACG 5247 33 100.0 35 ................................. TACCGATGTTTTTAGTATCATTGATAGGCGCAGCA 5315 33 97.0 33 G................................ ATTGGGACACCTCTTTGCTGATAATTTCGCAGA 5381 33 100.0 34 ................................. GCCATCTGGCATCATATGATGATTGGTGAACTTA 5448 33 97.0 32 ......................G.......... ATTTTTTATCAATTTTGATGTTATAGGTGGTT 5513 33 97.0 34 G................................ GACGGTTTCGGTGCGGTATCGCGGGTTGTCGCTG 5580 33 97.0 32 A................................ AAAAGTTTATTCCATGAAGGTTGTCGGTCAGA 5645 33 97.0 32 A................................ CATAAAAGGTAGTCAGTCGAAAACCATAACCG 5710 33 100.0 35 ................................. CCACAATGCCGATTTGGCGAATACGCAGAAGCAGG 5778 33 100.0 35 ................................. CATGTCCAGCTTGTGTTTATCCAGCTTCTCCCATG 5846 33 100.0 33 ................................. ACATTATAACCTTTTTAAAAATCTTGATAAGTA 5912 33 97.0 33 T................................ CAAAATCAGACGACCTTGCAACAATCGACCGCG 5978 33 100.0 36 ................................. ACACCCAGCCGATTGGGACAATATGCAAGACATGAG 6047 33 100.0 35 ................................. GTCGTTGAATTGTTTGGCGAGCGCAGTCATGCTCG 6115 33 100.0 32 ................................. CAGCCTTTACAGCCCGTCTCAAAGCGAGGGGG 6180 33 97.0 34 A................................ AAAGACAACATCTACTATTCGGACGAAGCGTAAA 6247 33 100.0 33 ................................. ATCGTGTAATTTGTCGAAACCCTCGCGTCCGAA 6313 33 97.0 34 A................................ CACTTCTTTGAGCAATTTCAGGATTTCACGGCAG 6380 33 97.0 33 A................................ ATTTTTCCGCTCCCGCAGGCTCCAAAACCACGC 6446 33 97.0 34 ........T........................ ATCCTAGTAACGATTTGGGTCTGACCGGTATTAT 6513 33 87.9 0 T............A....A...C.......... | ========== ====== ====== ====== ================================= ======================================== ================== 98 33 97.8 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAACAATCCCTACAAGGAAAAAGCCGTGAAGAACGGTAT # Right flank : CCCGTTGCCGAGGGAGCAGATGTAGAGGCGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGAAACCAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATATGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGATGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAACA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //