Array 1 65768-66935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQV01000021.1 Pseudomonas aeruginosa strain DUN-018 IPC1031_21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65768 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 65828 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 65888 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 65948 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 66008 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 66068 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 66128 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 66188 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 66248 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 66308 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 66368 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 66428 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 66488 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 66548 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 66608 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 66668 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 66728 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 66788 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 66848 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 66908 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77828-75460 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQV01000021.1 Pseudomonas aeruginosa strain DUN-018 IPC1031_21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77827 28 100.0 32 ............................ AGGGAGATCGGATGCCCGGTGCTCCCGCTCTG 77767 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 77707 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 77647 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 77587 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 77527 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 77467 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 77407 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 77347 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 77287 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 77227 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 77167 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 77107 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 77047 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 76987 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76927 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76867 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 76807 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 76747 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 76687 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 76627 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 76567 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 76507 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 76447 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 76387 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 76327 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 76267 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 76207 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 76147 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 76087 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 76027 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 75967 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 75907 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 75847 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 75787 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 75727 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 75667 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 75607 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 75547 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75487 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //