Array 1 248045-249414 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATL01000008.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_d6 d6_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 248045 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 248106 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 248167 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 248228 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 248289 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 248350 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 248411 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 248472 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 248533 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 248594 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 248655 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 248716 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 248777 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 248838 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 248899 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 248960 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 249021 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 249082 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 249143 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 249204 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 249265 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 249326 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 249387 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265674-266375 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATL01000008.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_d6 d6_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265674 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 265736 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 265797 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 265858 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 265919 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 265980 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 266041 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 266102 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 266163 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 266224 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 266285 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 266346 29 96.6 0 ............T................ | A [266373] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //