Array 1 185104-186031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJC01000015.1 Chania multitudinisentens RB-25 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185104 28 100.0 32 ............................ ACAGATGATCCCCGTTGTATGCATCCGCCGAT 185164 28 100.0 32 ............................ ATACCAGATAGCAACCCAGCCTCTTTATCAGC 185224 28 100.0 33 ............................ CTGGAACATCTGTCAAAAGAGGCTTTAGAGGCA 185285 28 100.0 32 ............................ TGTGGCGTTGATACAGTTCAAAAGAGCCAATT 185345 28 100.0 32 ............................ CACGGAACATTATGAATGCAGTAAACGAGCTT 185405 28 100.0 32 ............................ GACCAGGATCGCGGAAGGGTCAGAGGTTTCCC 185465 28 100.0 32 ............................ ACTGATAAATTAAAAGAGTTAAGGGATGAAAT 185525 28 100.0 32 ............................ ACGGGCCGTAAACTGGTCAAGACCATGAACAA 185585 28 100.0 32 ............................ ATGACCATAACTGCGGCCCGTGCAATGGCTTC 185645 28 100.0 32 ............................ TAACTTACCTTCCACCAACTTGAAGCCCGGTA 185705 28 96.4 31 .............T.............. GCGCCAACGTGATCAGCGGGAAATTCGCATA 185764 28 96.4 32 .............T.............. ATGTATTCAGCTTGTGATAGCCCATCTGGAAG 185824 28 96.4 32 .............T.............. CGCCTTTCTGGCTTCTTCGTTCAGCTTTTTAA 185884 28 96.4 32 .............T.............. AATCTCTGGCCTCTGGCAGTTCGTCTTTCAGG 185944 28 100.0 32 ............................ ATCCGGGCAGAAACACCCGTAGCATAGCGAGA 186004 28 92.9 0 ...........T..............T. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGCACTCAGTACATTAGACGCACAGCCGTGGCGCAAAGGGCTGCGTGATAATACTGAGCACAGCGGCATTTTGCCGGTGCCGGAGAAAGTGAAGTATCGCACCGTGCGGCGTGTGCAACCAAAGAGTAACGCGGAACGGTTACGCCGCCGTTCAGTCAGCAAAGGGTGGCTGACTGAAGAAGAAGCGCGGCAGCGTATTCCTGATTCAGTGGAAAAACGCTCATCTTTACCCTTTATTCGTTTGAAAAGCTTATCCAGCGAGCAGACGTTTCTGTTGTTTATCGAACAGGGGCCGCTTGGCGATAACGCAACCGAAGGTGCATTCAGTGCTTATGGCTTAAGCCCGACAGCGACCATCCCGTGGTTTTAACCCTAATTTTTTGGCCGATCCTAACTTATTGATTTAATAGGTTAGGATTAGCCATCGCTGAAAAAGGGTTTTTCAACGGATTTGCCTGTTGTTGTTTGATTAACAGTAGGTTAGAAAGGATATGCAACA # Right flank : ATTAATCAGATGAGCGCTAACGAGCTCATTGGTGAGTTCACCGCCGTGTTGAAGAACCAACCAACACTACCGATCTGCGCCCCTTAATTCCGTGCTAGTGCTGTTGGCGGGTATTTGAGCGCCGAACACGTAATGTGCTCAAATACCCCAGTCAGATACCACAAGTAATAAAGGAACACAGCCTTGGCTGTGTTCCTGCGCCTTGCATCAAGCCTGATATTCTCAGGCGGAAAGTTATTTATCTATTGATCCAGGCGGCATCAACAAAATGGAATATACCGCTCCAGAACTGGCTGTAATAGGGCACACCATTTTTTTATTTGCTAACCACCCTCATTGATTTTGGCTTGCTGAAGTCTAGATACATACCATTCCAGGCTCTTACATTCTTTAATTCACTGGTCGCTACGTTACCAATAAATTCCCCAACTCTGCTATATGAAAGGTTATCCCAATCCGATAAATATACTTTTGCTTCTGAACCAGCATCTACATGAACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11400-11906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJC01000030.1 Chania multitudinisentens RB-25 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11400 28 100.0 32 ............................ TCCCCGCTTAAAATTCGCCTACGAGCTTCCTA 11460 28 100.0 32 ............................ GCTTTCATCAATTCGCCGCCTAACGGATTTTT 11520 28 100.0 32 ............................ TGTCACTGAAACTGAAAAAATTGTATCACCGG 11580 28 100.0 32 ............................ TCTTACCCTGAGCATGAGCGTGAAGCTCGTGC 11640 28 100.0 32 ............................ AATATCATTCGCGCTTGGGGAAACCATGCCGC 11700 28 100.0 32 ............................ AATGGCATTACACGAACAATCTGGCAGATGAC 11760 28 92.9 32 ............A....T.......... ATATACCAACGAAGAGTTATATATTTTAGCAA 11820 28 96.4 32 ...........T................ GATACATCTGAATAGTTACAACTCATTGATCA 11880 27 85.7 0 ............A........-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : GGCTCATGGGCTGATGCGCTACCAGGTTTTCTTTCTGTTTTTTACTCAGTTGCTTAACCTGATATTCCAGCTTTAGCGCCGTGGAGCGATCGCCAATCTGGCAGTGAAAGACCAGTTCCAGCTCACCTTTACCCCGCAGGGCTTTGGCCCCTTTACCGGTTTGGTGCTGGGCGATACGCCGCGCCACATCGGTAGTGATACCGGTATACAGCATGCCGCCCGGCATACGCAGCATATAAAGGTGCCAGATAATCTCATCCATAAATGCCTACACCGTTTCTCAAGCAAGCAAAGTCACTGTCTATTACGCAGCCGCTATTTTTCAGCGTTACGGGAAAGAGTTCAATGGATAAATAGTCACAGGCTGTTGACCCTCTTTTTTAGCGCATGGCTAATATGTTGATTTTAAAGAGGTAAAAATCTGTGATAGAAAAAGGGTTTTTGAGCCTTTTGTGTTGTTAGCCGATGATAATTAACACGATTAGCGCTATGCTTGAACC # Right flank : AAGTGTTCAAACGGCCAATAAGTTAACGCCTGTTCCCTTCTGTTACTTCAGTTACGCAAGAAATAACCTATAATTAATAGGTTATTTCCGACCGCGAAAAACGCCTGAAAAAGTGTTCTATTCTAAAAGTAGTGTTTTATAACACTTTTGAGGTACATATCAAATGACCTGCTAATTAACATGATTGAGTTTATCTTTTCTTTTTATTAACTCTCTTTAGATCATATTCATATAGATTAATCTTAAACATTATTTGATGTTATTAGTTTTTTATATCGTTTTTTATTTTTATATCATCCTATTTGGATGATTATTTTATTTTAATGATTCTGATGCATGCCTCAATCATTTTCTATACCATCTTATAGACAGTTAAATACTGCTAAACATTTACAATGCTTGTTTAATAGACTTGAAATTGATATGCACAAGATAAGTGGATTATCTTGTAAAGCAAACGGTGAAGTATGCTTAAAATTGAAAAGCCCCATGCCGCGTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 24653-25641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJC01000030.1 Chania multitudinisentens RB-25 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24653 28 100.0 32 ............................ AGCCAACCGTTTATTGAAATGGTCAATGATTA 24713 28 100.0 32 ............................ AAAATCAAGCCATGCAGCAGCCAACAGAACCT 24773 28 100.0 32 ............................ ACCGCATTAACGCAAAAATACGGGCCATTCAT 24833 28 100.0 32 ............................ TAAGCAGGCACCCCTCACAGAAACGCATAAAT 24893 28 100.0 32 ............................ TCACTATCATCTTGTTTAATATCGCTAATTCT 24953 28 100.0 32 ............................ AACGATATGAACCGGCTGAACTTCATTGTTCA 25013 28 100.0 32 ............................ AGTTTCCCGAGGAAGATAATGGCTGATAACGA 25073 28 100.0 32 ............................ TGATGGACGTAAATTCTGCCCTCCTTCTGGTT 25133 28 100.0 32 ............................ CAGGGAGCTGCGCAACGCGGTGGCGTCCATCT 25193 28 96.4 32 ...........C................ CGGATGCTACAACGCAGCCGAGCCAGCTTGAC 25253 28 96.4 32 ...........C................ GAGATAATCGCGTTTTTTGCGATTCCGGTGAT 25313 28 96.4 32 .............C.............. AAGTGGGGCCCCGACTAATTCAGAGCATTCCG 25373 28 92.9 32 ........T....C.............. ATAAAGATGTGCAGCACTTAAAACCACTCGGT 25433 28 100.0 33 ............................ GCTACGCGGTTCCCTGTTGACAGGGCGATGGAC 25494 28 92.9 32 .............C....C......... AAAGAAAGAGATGAAAAAGCGAGTAAAGATGA 25554 28 89.3 32 ..C..........C...T.......... TATACACCAACCCAGTGGTGGATCATCCGATT 25614 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCTGGCAGAGATGGGGATTGATGGAGAGGCCGTCCTGCGTGCTTTGGCCGTGGAAGCCGCAGAACATGCGATTAGTCAGGGGCAGCTTTCTGGCCGCCTGCGGCATACTCAGGTCACGCTATTCAAGGCGACACAAATATCCTCTTATTACCAGTCTTTGGTTGGCAGCGGAGCAACGTGGCTTAGCGAGGATAATGGGGTAGGGGCGGTCTGCGATCGGCTGAAGATTATCCCGCTGGCGTGTAATCACCATAATATTATCGATTGTGTTGCCGAGATTCGGGCGGTGATCAAACCGCTGCGCTGATGATCGTGTAATCGCGCCTTTATCTTTGATGAGGCGCGATTACAATAGCCAGATGTTGTTGACCCTCTTTTTTAGCCTATAAGTAATGTATTGATTTTAAAAAGGATAAAAGAACTCGGTAGAAAAAGGGTTTTTTAGCCATTGGTTATGTTACTCAATGATAATTAACGCGATTAACGCTATGTTTGAACA # Right flank : AGTCGCAACCGAAATAATGGGTATGTGAAGGCACTGGCAAGGCGGCGGTGAGTGGGGAGAACGTAGCCGGAACAATGCCTGAAACATATGCTCTTTCCCTCGCCCGGTTAGTATTCGGGTGCATTCCCCTAAGTGCAGAAAAAAATCCCATAAGCGGATAGCGCTATTTCAGTGGCTATCATCATGGTAAAATGCTGTTTATTTATACATGATTAAAGGGACTGTCATGATAAGAAAACTCCTCGATCTTGTGCCGATCTTCGGTAAAAGTGACGTATCTATGATCGAAAAATTACTACAAGAGGTATTGCTTCCCCTCGCCGAATGTGATCAGGCGTTACCCAAAAAAGCATTACGGTATGTTATTGATGGTTCAAATACCGATGTATTTCTGGCATTGAGCCAGGTTGATGCAGCGAAGGCCGCAACATTACTCAAAACACCAGGAACGTTGGGCTGGTGGTATGGCGGTAATATCAATACCGGGAAATTCAACACAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //