Array 1 1-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAW01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N19977 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ ATATTCGCCGCTTTCCATTTACCGAACGTAAC 61 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 122 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [164] 164 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 225 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 286 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 347 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 408 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 469 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 530 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 591 29 96.6 0 A............................ | A [617] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.9 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17386-16260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAW01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N19977 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17385 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 17324 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 17263 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 17202 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17141 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17080 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17019 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16958 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16897 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16836 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16775 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16714 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16653 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16592 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16531 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16470 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16409 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16348 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16287 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 879-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAW01000094.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N19977 contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 878 28 96.6 32 -............................ CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 818 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 751 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 690 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 629 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 568 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 507 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 446 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 385 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 324 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 263 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 202 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 141 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGTCGTTCATCAGGCACTACCGGCACTTTCTGGGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //