Array 1 199867-198677 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199866 29 100.0 32 ............................. CCCATGAGATGGGTCTGGTGCTTGACCGTGAG 199805 29 96.6 32 ............................A TTCCTGCAGCGCCTCAACGGACAGCCCGACCT 199744 29 100.0 32 ............................. CCAGCAGCGCCCTGAAGTCGCCCATCTGCCCC 199683 29 100.0 32 ............................. GCCTCCAGCGCTCCGCCGTCATCCTGGGCCCG 199622 29 100.0 32 ............................. GCGTCAGGCGAGGTGCGTTACACCCTGTTGCG 199561 29 100.0 32 ............................. CCTTAGGCTGGAAGGCCGACTTCACCGGCGCC 199500 29 100.0 32 ............................. CGCCTGTTCGCGCGATTGCAACGTCTTAACGA 199439 29 100.0 32 ............................. CCCGAAATGATCGGCGGTCCCCATCACCAGAA 199378 29 100.0 32 ............................. CTTCATCACGATCGCAATAGGTGATTTTCGCT 199317 29 100.0 32 ............................. ATGGCGACCCTTGAGGCCGAGGCCGTGGGGCT 199256 29 100.0 32 ............................. CCCTTGACTTGGTCATGGGGGCGATGGCGGGA 199195 29 100.0 33 ............................. CAGATCAGCGAGCAAAATCAAACGGCCTGGGGT 199133 29 100.0 32 ............................. CTCGATGACCGGCTTGCTCCCAATATTGTCGG 199072 29 100.0 32 ............................. CGATGGCTCGACCGGGTACTGCTATCGTGAGT 199011 29 100.0 32 ............................. CGCCCCCATGCGCAAATATTCCAGGGTGATCG 198950 29 100.0 32 ............................. GTCAATCTGGGCAGTCGGGCCTGGACCGATCT 198889 29 100.0 32 ............................. TAATCCACCCGGCCCTCGTCCGCCCCGGCAGC 198828 29 100.0 32 ............................. CGCGGGTCGATTCAGGCGAAACCTTGGGATTC 198767 29 100.0 32 ............................. GGCCTCCTCGGCCACGGCCCCGATATCCTGGT 198706 29 86.2 0 ...C..................GC....A | G [198680] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CCGCCCCTTGACGCCCCCGAGGCCGTCGATCCGGTTATCCCGCCAGAGGAGCCTTCGGGTGATGATGGTCATCGTGGTTGAAAACGCCCCGCCCCGGCTGCGTGGACGCCTCGCCCTCTGGCTGGCCGAGATCAGGGCGGGGGTCTACGTCGGGGTCTATTCCCGCCGTGTCCGCGAACGCATCTGGGACGAGGTGACCCAGATGATCGACAAGGGAAGCGCCGTGATAACCTGGAGCGCCCCAACGGATTCGGGCTTCGCCTTCGAGGCCGTCGGCGAAAACCGCCGCGAACCGGTCGAAATCGACGGCCTGACCCTGGTCCGCTTCCACCCCGTCAAACAGCCGCCCGACTAACCGCGACCGCCGCCCCGGCACGACGATCGCCAAAGACAAAAAGCAGCCCGCCGAGCCGCGAAATCGCACCTAGAACAAAAACGGAACATCGGTAAGTTTTTTGACATCGTGAAAAGATATGATAATCAACGACTTCCGTTGATGA # Right flank : TGGTAACGGTTCCCCCGCATCTGGGGGAGGGGTGGCTGGATGATGCCATGATCTTCTGCCTTCTTTACTACTTCGGCTATCGTTCACCTAATTGGCAAGCGCTCTATTAAATCGACCTTGCGCTTATTAACGACTCGCGACAAACAGAAAATAAGCACTAGGTGGATTTTTCTGGGTGATTAGAGCCCAATGATTTATTCTGGTGAGATGGAGGGTCCCACATGATCAAAGGTCTGTTGCGCCAGCTTGGCGCGCAAAAATCGATTGCCGCGCAGATCGGCGTATCTGAACAAAGCGTTTCGAAGGTCGTTCGCGGAGACGCCAAGGGTGGAGGTTTACGCGTCGCTCTGGTGGTGCTGGCCGCCGCGGTGGCGGAGGTTGGCAGTGAAGCCGCCTCGCGCATCCTGGCGCGGGCGGCCGAAATGCTGAGGGCGCAGCGCCCTGACAAAGTCTGACTGTCCGAAGCGATTGAGACACATCACAACCAATACCAGTCATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214174-213598 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 214173 37 100.0 37 ..................................... GCCTAAAGAGGCGCTTTTCTGCAGAACGGCTAAAGGC 214099 37 100.0 37 ..................................... AACATACGCCCCTGGAGATCATCTTCGACGCAGTCCC 214025 37 100.0 40 ..................................... GCGCTGCTCCACGGTCGGCTGATTGGCCGGCGGGGCGGGA 213948 37 100.0 53 ..................................... ACGCACTTCCGATAAAAGTCCGCCTCAACTGGATAGCCGGCCTCGGCCACCTC 213858 37 100.0 35 ..................................... CCGGACTTCTTTTCAACGATGGTTTCGGTCTTCTC 213786 37 100.0 40 ..................................... TATCAGCCATTGCGGCGCGCCTCGGCAATCTGGAGGTGGT 213709 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 213634 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ===================================================== ================== 8 37 99.7 40 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : GATCCGGCCTGTATTGGCGATCGGCGACAGCCTTTCATCCGCCCCGCCACCCCAAGCGCGGCGATGATCCCCAAGCCTTCCTAACCGCCTTGATCGCCAAGGAGTGCTTGGCCCGCGCCCTGCCCCTCCCCGCCATCAAGATCATCGCGCTGCGCCGCGGCGCCCGCGATGGTCTGGCCGCCCTGGCCCATTTGACCTTCCCCAAGCCGGTAAGCGGACCGATCCTGCTTGGCCGGGACGCCCACCGGGGGGGCGGCGTCTTCCTCCTTGGGGCGGTGCGGCGGCCCCCGGCCGAAGAGAGCCTCCCCTCGCGCGAGGGGTCCGCTGACTCAAACGACTCGCGGAGCGCTCGCAATGAGCCAATCATTTGATTTTCCCGTTCTTTTTGACACCGCCCCTCGAATGGCCGGCTTGAGGACAGCCCTTTTCAAGCCATTTTTTTCGACCCCTCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGCC # Right flank : TCCCCTGACCCGCGCCGCTATCTCCGCCTTGCCGGGATTAAAGGGGGCGGACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGATGCCACCGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTGACTCATGGGGGGTTCTCTCTAAAAGCGGCGCCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAGCCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCCGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAATGGGGGCGTGGCGAAAAGGCCCGCAGTGTGGATCTCATCGCCGGCCTGCGCGCCCATCAAGCCACGGAAAGCGGCCCGACTCCCG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 420333-422803 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 420333 29 96.6 32 ............................T TACTACACCGAGCCCCGCATTATCCGGGTGCG 420394 29 100.0 32 ............................. GCGCGGGCATCATCTGCCCCGCACACCATAGC 420455 29 96.6 32 ............................G TTTGGCGAATACCCCATGGTCCAAGGCGCTAT 420516 29 100.0 32 ............................. GACGCCGCGAACGTCCTGACCGAAGCCCTGGC 420577 29 100.0 32 ............................. TGGCGGCGGCGTTTCGCGCTGAAGGCGCCCTG 420638 29 100.0 32 ............................. GCCGCCGGGACCGGGGCGCAGGCGATCTACAA 420699 29 100.0 32 ............................. CTCGGCAATGCGAGGGATCACGTCGCCGGAGC 420760 29 100.0 32 ............................. CTACTACGCCCGACAGGCGATATTGGATAAGC 420821 29 100.0 32 ............................. TTAATCCCCGATCTCAGGGGGAGGCTGGAATG 420882 29 100.0 32 ............................. AACAGACGACAGCGGGATCATCCTGGCATCGA 420943 29 100.0 32 ............................. TGCGTAAGCTGCGTTCCTTGCTGGATTAGGGC 421004 29 100.0 32 ............................. AAGCCCGGGGTTTATGGAGAGCATACCATGAC 421065 29 100.0 32 ............................. CCCGGACGCCTTTTGGTGGACGACGCCGCAAA 421126 29 100.0 32 ............................. ATGACTGCATGACCGAGGCGCTTTATGCCGAG 421187 29 100.0 32 ............................. TCTAGGCCCCGGTACGCAGTGCTCACGCGTAC 421248 29 100.0 32 ............................. GACATCGACACGCCTCCGCCGACGACGGCCAC 421309 29 100.0 32 ............................. CGGGTAATCTCGCTGTGAAGGCTGACTTCACC 421370 29 100.0 32 ............................. CGGCCGAATGTTGCCCGCCCCTCCCCCTGTCC 421431 29 100.0 32 ............................. ACCACGGGGAATTCCCGATGCTCCGCCTCCTG 421492 29 100.0 32 ............................. GTGCGCGACAACATGGGGTGGGTGCGCGATCA 421553 29 100.0 32 ............................. ACGATCGGGTCTTTGCGCCAGTTCGGCGACCA 421614 29 96.6 32 ............................A TGTTCCGTCTGGCTCCAAGGTGTCGTAATCGC 421675 29 100.0 32 ............................. TTGCCGCGAATGCGGCGCCCCCCTGGCGGTCG 421736 29 100.0 32 ............................. GTGCTCTCCGCCATACCTTGGGTGGAGCAGAA 421797 29 100.0 32 ............................. GCCGTGCTCGATCGATGCGATCTCGGCAGTGA 421858 29 93.1 32 .........A...C............... TGCCGACCGCCTGAGGCGCGAGGCCGAGGTGA 421919 29 93.1 32 .........A...C............... ACCGCGCGGTCCTCCCTTCATTATCGATTTCA 421980 29 93.1 32 .........A...C............... CATGTCGCCCGCACAGCGGGAACTGGCCGCCC 422041 29 93.1 34 .........A...C............... GAGCACACCGAGGCGCTTGCCCGGGCGGCTGCGG 422104 29 93.1 32 .........A...C............... AGCCTTCTCATCTGGGCGGCAAAGCATGTTGC 422165 29 89.7 32 .........A...C..............G TGATGAATCTCCAGGATCGCCTTATTGCTCAG 422226 29 93.1 32 .........A...C............... GTGTGTGAACGGACAAAACACCGCCCTCTGCT 422287 29 93.1 32 .........A...C............... CTTCAAAAACCCGCGATTTCCGCCGCGATTGC 422348 29 93.1 32 .........A...C............... CGGCCAGGACAGCACATAAGCGGCCCCGCCGC 422409 29 93.1 32 .........A...C............... GTTGCTGTTCGTCAGGATCGCGCCGAGAAGCG 422470 29 93.1 32 .........A...C............... CCGCCCTTGTTCTGATAGGCGGACCAGATCGT 422531 29 93.1 32 .........A...C............... AGCCCCCGGAATTCCCGCTCACTTGCGGTGCC 422592 29 93.1 32 .........A...C............... GCCGTAATGCCGCAAGACCCCGGCTTGGCGCG 422653 29 100.0 32 ............................. ATCCAATCATCTGGCTCGCGGTTCGAGCCGCT 422714 29 100.0 32 ............................. TCGGCGGGAAGTTCATTTCGTGCATTGCGATT 422775 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 41 29 97.4 32 GGTTCCCCCGCACTCGTGGGGATAGACCC # Left flank : GAGCGACTCACCCGCCAGCGGGCGGCCAAGCTGTTTCGCCAACGCGGCGTTATTCCCTCGATGATCGACAGGATCAAAACGCTTCTGGGTCTTGGGGCCGAGACCGAGGAGATCGCTTGATGCCGATGGTTGTGGTCGTTACCCGCAATGTCGAGGCGCGCTACCGGGGGTTCCTGGGCTCGGCCATGCTTGAACTGGCGCCCGGCGTCTATGCGCAGCCCCGGATGAACGCCGGCGTCCGCCAGCGGATTTGGGAGGTGCTTGCCCAATGGTATGGGCACCTGCGCCAGGGCAGCATCGTTATGACCTGGGCCGACAGCCTAGCCAATGGCGGCCTTGGCCTCGCCACCCTGGGTGAACCCCCCAAGGATATCGTTGCCCACGACGGCATCCTGCTCGTCCGCCGGGCCCTGCCGGCAATCGAAAAGAAGCCCAGTGACTGACTTTTTTCCTTCTGCTCTTTGACAGTGTGTATATTTTAGAAGGCGTTAAAGGTCAGA # Right flank : AGCATTCGGACCACTCTGATAGACAGCCAATCGAGCCGCAGGGCGTTGCCGCAAGTTATCCAGTTTTCCTTGTTCAGTGGCAGGAACTCGGCCAGCGCCAGCTTCTGTCCGCGGTACAGCACGTCCGCCTGGTATTCGGCGATGATGAGGGCGAGGCGCGCGATCTCGGCCTCGATGGCCCGCATCTCCTTGTAAGCGATGACAAGGAAATCGTTCCATCTACTCGCTGTCATTTCAGCGCCTGCCGCATCATTCGCGATAGGTCGGTCTGCAACGTGCGAAACTCACCCATCATGCGTTCCACATCAGTCGCCGGCGCGCCGTGTCCGCGCCGTTCGGCAAGCCATAATTTCAGCAAGCCGGCGACCCGGCCGAGATCGCCGTTGATACGGCCCAGCTCGGCGACGGCTTTCAAATCATAGACCGACCGAACCGGGTGATTGAGCGCCGCTGCTCGCACATAACCCGACACGCCCATGCCAGTGCTGGCGGCGCGCTGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACTCGTGGGGATAGACCC # Alternate repeat : GGTTCCCCCACACCCGTGGGGATAGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 530056-530671 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 530056 36 100.0 30 .................................... CGTGGCGGCGACCAATGCGGCATTCGAGCT 530122 36 100.0 30 .................................... GGCTGGCGCTTTCGACCGGCTACGTCATGG 530188 36 100.0 30 .................................... CGGGTAGATAGGCGCAATCGGTTCTCGGAT 530254 36 100.0 30 .................................... GGCGAGCCGTGCGCACCGGTCCTCCCCCCA 530320 36 100.0 30 .................................... CATGAAAGGAATGCCCAGATGAGCAAATCC 530386 36 100.0 30 .................................... TGATCCAGTCATCGCCCATCCCGGCCTGGG 530452 36 100.0 30 .................................... GTCACCAGGGCGATGCCGATCACCCGCACG 530518 36 94.4 83 ..........................A......C.. CCGCCCATTCCAATCCTTGACCCTCAACGCCTCAAGGCGGGTGATGCGGCTAGGAAAAATAGCGGTTTGGAAGCGGAGGCAAC T [530551] 530637 35 91.7 0 G.....T.......-..................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 9 36 98.5 37 ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Left flank : ATATCCTGATATTGAAGCAAATCGTCGTCGCGATCTGCTTCAGATCGCTCGGGATTTGCTTTGGCTCTGCCCGAGCGGATCGGGAGCCTCAAGGATGCCGGACGGGTGGCGGAAGATGGGAGTGCTGGTGTTTTATGATCTGCCGGTGGTCAGCCCGGAGCAACGGCTGGCGGCGGTGCGGTTTCACAAATTCCTGCTCGCCGATGGCTTCGAGCGCATGCACTACTCGATCTATGCCCGCTATTGCGGATCGATGGAACGCGCCGCCACCTATGAACGACGGGTGGAACAGGCCTTGCCCGCCGTCGGGCATGTCAATTTATTGAAATTGACCGATCGCCAGATGGTCGGCATGCGCAAATGGATCCGTGGCAACTACCGAGCCCCGGAAAATGCCGAGTTCGTGCCCCCAGCCCAGTATCAACTCTTCTGAACGTCCTGGCCCCTGCACGAAAAAACGCCCGAATCCTCAAGAAAATCAAGAGGATCCGGGCGGTACA # Right flank : CAACATAACAAGCATCGTCTCCGCTACCTCTTGATAATCTTAAAATAAAGGGAAAATCAAGATCTATGTCGCTTTTTTGGAAAGTCTGAGTCGGCCCAGGGCGGTGCATGAGGTTGTTCGGATTTTTTCCTTTCGGATGCCCTCGGCACTTTGAACGCAATACCCCTGGTCGCCATTCAAGTTGATGTTTGGACAAGACAGTTGTGCATAAAGAGCCGTCGCTTTTCCGGTGGCTAATCGGGCGGGCCACAGGGCGAGGCGGCCATCCACGGCCATCTTTTTCACCAGGAACAGCCTGTCCCCGCTCTCCAGGGGCCAATAGACCAGATCGCCCCGGCGCAGGCGCATCACCAAACGGGCGTTCTCCGGCGGCGGCGGCGGGGCGGGTTGGGTCCTGTCGAAGCGAGTCAGAACCCGGTGGGTCCACCGGGGCCGGCCCTTCACCTGGATTTCCCACACCTCGTAAACGGCATTGCCCATGGTGCGCACGGCGGCTTTCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 989382-991847 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 989382 32 100.0 34 ................................ AGCTAAATACAATAACGATAAAAGAAATACGGAT 989448 32 100.0 32 ................................ GCGTCGATCGCGGGCGCGGGCGCCTTGGCCGG 989512 32 100.0 34 ................................ ATCCAGGGGCCAGTCGCGCGAGACCTCCCGGCGT 989578 32 100.0 34 ................................ GGGCACGACGCCGTTGATCGCCTTGGCCACCGCC 989644 32 100.0 35 ................................ CTCGATCTCCCGACGCAGGGCTGTTTGCTCCTCGG 989711 32 100.0 35 ................................ CATACCGAGTTGGCGGAGGGCTTCGGGCACCACGA 989778 32 100.0 34 ................................ TGCAAATATCCGTGGCGCTGGCCAGCGCCAAAAA 989844 32 100.0 33 ................................ GGGAGATTGAGGGGCTGCAAAAGGTCCCCCGTC 989909 32 100.0 35 ................................ TTACTGCATCAAAATGCAGACGCCCTTGGCCTGTC 989976 32 100.0 32 ................................ CTTGCCCGCCCCGCCCGCCACCACCCATGGGC 990040 32 100.0 33 ................................ GCCCGCCAGAGAGGCCTGGAGCTAACGTGGACA 990105 32 100.0 35 ................................ TCTTGGGCCTCGGTGCTATCGACGCGGTCGACGTT 990172 32 100.0 35 ................................ GTACCCTCGCCCTTAAGAAGGTGGGCAAGGTTCCC 990239 32 100.0 34 ................................ AAGGCGTGCTCGATGCCGACGCCGGCGGACAGGA 990305 32 100.0 34 ................................ CGTTCTCGGTCTACATCGACCCCGAGGCGGATAC 990371 32 100.0 34 ................................ CCACCCATCTTGGCCAAACCACGATAGCCGGCTC 990437 32 100.0 35 ................................ ATCCGGAGCCGGGTCAGCGACAATCCGTATCTGGT 990504 32 100.0 34 ................................ GAGGATGACGGCGAGGACGAATCGCCGGAAGACG 990570 32 100.0 35 ................................ CGGCCCCGCCCTCCTCCCCTCCCCGGCGCGGTGCT 990637 32 100.0 33 ................................ CATCCGCTGGATGATCGTGGCCTTCATCGGCAT 990702 32 100.0 33 ................................ ACAACGGCCACGGTGACCTATGACGCCCTCGCC 990767 32 100.0 33 ................................ TCTTTTTCCGGGGCCAAGCTACGCCAAGTCACG 990832 32 100.0 34 ................................ TGGCGCAGTTGCTCTGCCTCGACCGTCCCGGCTT 990898 32 100.0 33 ................................ GACCGCTTTTAGCGCGCCGGTATGCGACTTGGC 990963 32 100.0 33 ................................ TCGCATATCAAAGATCCCCAGGTACTCGACAGC 991028 32 100.0 33 ................................ GATCAACAAAGGCGATCGTCAAGTATGTCTCAA 991093 32 100.0 34 ................................ TCCGTCGGCCAAGACGAAATGTCGTTTCGGCGCC 991159 32 100.0 33 ................................ CACATTAGCCGGCGGTATCCAATGGATTACCTT 991224 32 100.0 34 ................................ AAGATCGATGTTTTCGACGAGATCCACGCCGCGT 991290 32 100.0 32 ................................ CTGGCCCGCGCCATGGCCGGTGGTGGCGCGAT 991354 32 100.0 34 ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991420 32 100.0 34 ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991486 32 100.0 34 ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991552 32 100.0 34 ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991618 32 100.0 34 ................................ CGAGGGCTTGTCCTCATTGCACGCCGAAAGGCCC 991684 32 100.0 34 ................................ GGGTGCTCGCCGTCAAGGACGCTACGCGCCGGCT 991750 32 100.0 34 ................................ TCGACCCGCAGTATGAAATAAATAAGCGGCGCAG 991816 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 38 32 100.0 34 GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Left flank : TCCCGATGATGATTCTTGTGACCTATGACGTGAACACGGTGGAGCCGGGCGGGCGGCGCCGGCTGCGACAGGTCGCCAAGGCCTGCCAGGATTATGGCCAGCGCGTTCAGAACTCGGTTTTCGAGGTCGAGGTCGATCCGGCGCGCTGGGTCGCCCTGAAAGCCCGGCTGGAAGCCATCATCGATCCCGCCCTTGATAGCCTGCGCTATTATGATCTGGGAGCGAACTGGCAGCGGCGGGTCGACCATGTCGGAGCGAAACCGGCCGTCGATCTCCATGGTCCGCTGATCCTCTGACCGTCGCCGAAACGGCCGCCGCCCAGCGCGAACCCCAAGCCTGCGCCAAGTCCCCGGCAGGATCGCGCTTGCCCTAAGATATTGGGAATCAATAACAACAAAACGGGCGATGGTTTAACCTCGCCCAAAACACCCCCCTCCCGCTACCCCTTCGCGCTTCCAACCGACTTTGGTCAATTAAACCACTATGCTATCAATGCCGGA # Right flank : CAATGTGTCGCCCCGAAACTCGGGATGGGAAGGGCGTCGGATCGTGTCCCGTTGCGTGGTGTAACAGCGGTATCCCCATTTGATCTCCGGGAGGCTTGGCCGGAGTGATCTCTGGTTTACGATGTCAAATAGCGGTGGTCTGCGTCGGTGGCTGTGCCGCAGTTGCTGCTGGCAGTTCATGCGCGACAACTGGCTCTCCAACCGCGCCTTCACATCCCACGGCAACATCATCGACCACTGCTGCGAGGCATGGAATAAACTCGTCGCTCAACCATGGCGTATCATAACAATCGGAAGCGTAAATGCGCCCGTCGGTCATAATAAAAGGCTAATTTTTACTAATCGGCGATGGCCTTTTTGAGAAGTCAGGCTGCGCATTGCTTCGACAATACATTGGCTAAGCTGAGGATTCGGCGAAAGGCGGGGTTGACGTTCGTTGGCAGCCATACTGCGTGAAACAACGAGGCTATCGCGATCACGATCCGTATCTCCGCCTCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1364440-1363865 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1364439 37 100.0 38 ..................................... CCCTTCCAGGAAAGCCTGGGCGCGAGCGCCCCGGACGT 1364364 37 100.0 41 ..................................... CCGCGAAAGTCGGGATCATCGGGGCGAAGAACAAGCTGGTC 1364286 37 100.0 39 ..................................... GGGAACCCCAGCTTAACGAGGCCGCTCTTGGCGTTGTAG 1364210 37 100.0 39 ..................................... ATCGGGGCGGTAATCCTGCGCACCCTTCGCCATGTCAAC 1364134 37 97.3 38 ......................T.............. ATCAGCAAGGAAAACTCGGTGGGGGTTTCAGTTTGCGG 1364059 37 100.0 44 ..................................... GCGGTCCCGTCCGGCCGAAGGATGGTGGCGTGCAAGGGCATATC 1363978 37 100.0 40 ..................................... GTGTTCCAGAGGCCGGAGGGTGGAGGGAGCTATCCCAATC 1363901 37 97.3 0 ..................T.................. | ========== ====== ====== ====== ===================================== ============================================ ================== 8 37 99.3 40 CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Left flank : GAAACAGCCGATGAACCGCTATGTGATCTGTTATGACATCGTCGATGACAAACGCCGGCTCAAAGTCGCCAAATGCCTTGATAGCTATGGCAGCCGGGTTCAGTTCAGCGTGTTCGAAGTGCTGGTGTCCAAGCCGCTGATGACCCGCATGGTCCGCGAACTGGGCGCGCTGATCAACGCCAAAACCGATCGCATCAGTATTTACCCCCAATGCGCGACCTGCGACGCCCGCCGCACCGATCTGGGCGCCACCGTTGAAAAGCCGGTTCACGAACCGTGGATCATCGTTTAAACTGCCCCCATTGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTTATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCCTAAAAACACCCCGTCCGCCGAGGTTACGACAAACCACCCTGTAACCCATTGAATAATAGAGCCTTTTAGAACCGGCT # Right flank : TGGATTACTCCCGAACGGCAAGGGGATGTAAAAAAGGGGTCAGACCCCCTTTCTCTCCTTTGACCCCCTTTCTCTCCTTTCTCGCCTTTCTCTCTGGGGTGTGGAACGCCTTGCCCAGGGCGGGCCGGGAAACACTCCCCCCTTGTCAACCAAATCGGGTGGACGGCATACTGGCTGATGCTTGGCTTTGATCCCATTGATTGGATGGCGGTTCCCGGCTCGTTGGCGAACGACTTGCAACGGCGGTTGCGCGGGGTTGTGGTGTCGCCGCGCCGGCTGTCTTTGCTGACGCCGGGCGTGAACGCCACCATTCCCATGCTGCGCGGGGTCTGGGGATGCGCCCTGCATGACCGCGACCGGGAAACCTATGCCACGGTGTTCGAGGGTCTGGGGCCCGATGGCGATCCCAGTGACCGGCGGCCGCTTTATGTGTTGCGCCCAGCCCCGGCCGACCCGCGCGACGCCCCGGCCCTGGAGTGGATCAGCCTGGGCGGCGCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1581962-1580591 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1581961 29 100.0 32 ............................. CCGCTGATTCGCAGTCGGGCAACCAAACCAAA 1581900 29 100.0 32 ............................. TCCAATCCCCCATCATGGCCTGCCCAGCGAAC 1581839 29 100.0 32 ............................. CTCGTCTCTGCTGGCTTGGTCCGCCGACGCGC 1581778 29 100.0 32 ............................. GATCATGACTGACCTCATCACGCTGCGCGACC 1581717 29 100.0 32 ............................. ATCACCTTCGTGCCGTTTGGGACAAAGGTGTA 1581656 29 100.0 32 ............................. ACGTAGTCCTTCATGGACATCTCGCCGGCGTC 1581595 29 100.0 32 ............................. TGATCGCCCTCATCCTCGCAAACTGGCGCGCA 1581534 29 100.0 32 ............................. CCATTGTGCGCCCTCTGCATCGCCAATGGGGA 1581473 29 100.0 32 ............................. CCATCGATATCAATCGCTCCGGCCCGCCACTC 1581412 29 100.0 32 ............................. GTCATCCCGATTGACCGGGCGCAGGTATTCGT 1581351 29 100.0 32 ............................. TCCCCGTTGAGCATTTGCGAGCGCAGCGGCTC 1581290 29 100.0 32 ............................. CTACAACCCGCCCCCGCCCCCGTGCCGAGCGG 1581229 29 100.0 32 ............................. TGCGACTTAACGTCCTCTCAGAGACAACGGGA 1581168 29 100.0 32 ............................. GTTCACGCAACGAAGACGGCTGAAATCGAAAT 1581107 29 100.0 32 ............................. GTCACGGCGGCGACCCAGGGGTTGGCACTCCA 1581046 29 100.0 32 ............................. CTTGGGGCGTCAATTGTGGCTCTTGTCGCCAG 1580985 29 100.0 32 ............................. ACCCAGAGACCCGCACTTTCCAAAACGGCAGC 1580924 29 100.0 32 ............................. ATCGTGCTCGCCGATATCCGCTTTAGGGATCC 1580863 29 100.0 32 ............................. GCTTGCGTGATGTGGTGTTTGCCGCTGGCGAT 1580802 29 100.0 32 ............................. TCCGCCCTGGCTGCGGCGATCGGCCTTTACAT 1580741 29 100.0 32 ............................. TTTCGGCCAGTCGCGCGTTCGTTGTGTCGAGC 1580680 29 100.0 32 ............................. CGGTTAGCCTCGACCAGGGCGGCGTCGGCGAT 1580619 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CAGTCGATGTTGCGCTTCGTCGGCATCGATCCAATGCGACAAGATATCATCGTCGTTAAAAGCTCGGTCCATTTCCGCGCCGATTTCGAACCGATCGCCGAAGCCATCCTCGACTGCGCCGCCCCCGGCCCGATGCTGGCCGACCCGGCGGCCCTGCCCTTCAAACGCTTGCGCAAAGGCCTGCGCCTATCCCCCAACGGCCCGGCCTTCGGGTGAGGAAGGGGGATGAGAGGTCATGGATTTTATCCCCCCGACCGGACTGTGCATCGCCCCCCGGAGGCGCCACCCGACCTTGCGAGCCCCCTTCCCGACCTGATAAACTTGCCCTTCCGCATTCAAAGGGGGGCGATCCCAGCCCGAGGTGATCGCGACCCGGCCGATTTGCGCCAATAATAAAGACAACCGTATGCCAAGCGGCCCCCACTAAGAACAAAACAGAAACATCGGTAAGTTTTTTGACATCGTGAAAAGACATGATAATCAACGACTTCCGTCGATGA # Right flank : CGAAATTCGCAGATCCGGTCCTGGGGCTTGCCTTCATGAACTGCCCGGCGCGGGAAAGGTGGCGGACCACCTCGGTGGCCCCGTCCCTTTTTTCCCGCCCGCCCCTGTCGGCATCGCTGACCCGCAAACGTGACCTGGGGCCGGAAGGACGGCTTCACCGGCGATAGCCGGGGCGACGCCGCGATGGGAAAAAACCCCCGACGGACAGGGCCCCGCCGGGGGTAGCGCCTCGCCCTAGGAGGACCGGCCTGTGGTCTCGGCATACGAGGCGCTTTGGGCCGAGGTTAAGTCGCCAGCCCCCGACCGGCAAGCCCCTTATGTCCCAAACCCTGGATCCAACCAAACCGGTCTTGATCTCAAAAGTCTCGCCTCGTAAGATTATCGGGCGAAGCGATGGTCGCTGACGGGAGCGTTAACCATCGCCGGCAGGTCCGCCGCCCGCTCCGGTGAGACTCCCATCCCCACCCTTGCTTTCGGCGCAAGCTGAGCGGGTGGAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 1695968-1694053 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1695967 31 100.0 32 ............................... CCAACGGGTGGGGGGAGGACGCCGAGCCGGGG 1695904 31 100.0 34 ............................... GCGGCGATTGCGGCCTCTTCTACGGGCACCCAAC 1695839 31 100.0 34 ............................... CCGAATGTAGGCGATCTGCGCAGCCACGAACGGC 1695774 31 100.0 33 ............................... CATCGGAAAACGGTCGGCGGGCAAGTCCGCCGT 1695710 31 100.0 33 ............................... TGGCGGTACCGGCGCACCCGGGCCACGTCCTGC 1695646 31 100.0 36 ............................... TGAATAAAACGCGGTTTTAGCGGCGCTCTTCTCCGA 1695579 31 100.0 33 ............................... CCGCGCTGCTCGTCAGTGAGCACAATGCCCTGT 1695515 31 100.0 35 ............................... GCTGGTCGCCGCGTAGGTTCCGTCTGGCTCCAAAG 1695449 31 100.0 33 ............................... CGACCGGGCCGGGGGCTTGGCGCAAGCCTTGGT 1695385 31 100.0 36 ............................... TGGCGAAGGTCACGGCGCTGGAAGCGCGTACCTCGG 1695318 31 100.0 34 ............................... ATGCGCGGCCTGGGCCAAAAAATGGGCGACGCGC 1695253 31 100.0 34 ............................... GTCAAAGTCCGCCTCGACCAAAGGCGCGCTCCCA 1695188 31 100.0 34 ............................... GATCTCCCCGACCTCAACATAGGTCAGAGCCGAG 1695123 31 100.0 33 ............................... CCCCATCCCCGACGAAAATGCTCGTCGTGTGGC 1695059 31 100.0 35 ............................... CTTGGCCGGCTGCGGGCGCTGCTCCCGGCTTAACG 1694993 31 100.0 33 ............................... AGCGGTCAAGCTCGGATGCTTGAAGAGGCTGTT 1694929 31 100.0 36 ............................... GGCCGCTGGCGTCTCCATGACCACAACGGCCTGCGC 1694862 31 100.0 32 ............................... CTCGGGGCACAATCATCAAACCACATGCGATT 1694799 31 96.8 36 ...............A............... TAAGAATTGCTTTTGCAAATCCTCAGAGAAAAGAAA 1694732 31 100.0 33 ............................... GCGCCAAGCCTTATCGGACTTTTCCGTTCCATC 1694668 31 100.0 34 ............................... TGCCTGCGAGAAGCCAAGCAGCTCGCGGCGTATG 1694603 31 100.0 35 ............................... CCCGCGTTTGACGGCGGCGGCGACGTCCGGGTTGG 1694537 31 100.0 34 ............................... TCAACGTCCCTGGCGCACTGACCATCCCCCGCGA 1694472 31 100.0 33 ............................... GCCCGCGTCGGCGGGCTAAATCGAGTACCCGTT 1694408 31 100.0 35 ............................... ACGGTGCGCGCGCAACAGATCGTCGACCGCCGCGC 1694342 31 100.0 33 ............................... TCTCGCTTCATCCGCCGCGCCTGCGCGAAAAGA 1694278 31 100.0 33 ............................... CCGGAGGACCGGGGCCTCGCGATCATCGCTAAA 1694214 31 100.0 36 ............................... CACTCCCCGGACCTGTCTCCGGTCTGGCCGGAGGGC 1694147 31 100.0 33 ............................... CTTTATGTGCTGATGCAGGCCGGCCTGCTGGTC 1694083 31 80.6 0 ...............ACCT.C........T. | ========== ====== ====== ====== =============================== ==================================== ================== 30 31 99.2 34 GTCGCTCCCTCACGGGGGCGTGGATTGAAAC # Left flank : GGCCGAACGCCGCCATCTGCAAACCCACGACTGGCCGGGCAATGTCCGCGAACTGGCCCATTTCGCCAAACGCGTCGCGCTGGGCTTCAGCGATGAGCCCGACCAAGCCGACCCGATCGGCCAGGACGAGCCGCTGCCCCGCCGGGTCGACGCCTTCGAAGCCGCCCAGATCCGCAAGGCCCTGGAAGCCACCCAGGGCGACGTGCAAGCCGCCTGCGAGGCCCTGGGGCTGCCCCGCAAAACCCTGTACGACAAGCTCCGCCGCCACGCCATCGACCAATCGGCCTATCGCCCGACCCCGGGGTGACAAAGTTCCCAACCGGCGCGAACCCCAAGCCTGCGCCAAGTCGCCGCCAGGATCGCGCTAACGCCATCCCCTTGATCGGCCAACATTGTTTCCACCCCCTTCCCCGCCCCTCCTCTTTTGAGGCCCTTCCTCCCCCCCTTTCGCGCCCCACCCCCACTTTCCTTAAGACAACCAGTCCCTTACACTCCGGGGA # Right flank : CTTGGCGGAGGAAACCTAAGGGGCTAAGCGGTTTCCCCTTCCCGCCCGTTATCCCGGGCGAAAGCGCCTTCCGCTTGGCCGGATTTTGCGCTACCTTATATTTGCTCACTTTGAGCATAACGCGCTTCGGCGCGGAGGACCGGTGGCTTTCGCGAGGGACCGATGACGGGATTGGAGATGCCTTTCGCCTCTGACCGTGCCGCGACGACGCTTGCCGATCTGTCGTGGTCGGCCGAGGTCGAGCGCGAGAGCGCGGCGCTTTATGAAAAGGTGGCGCGGGTGGTGCCGCCGGTTGAATGGCGGGTGTTCGCGCCGCTAATCCTGGCGATCAACGCCCTGAAGGCCGAGCGCGGCGCCGTCATCCTCGCCCATAGCTATCAAACGCCCGAGATCTACCATTGCGTCGCCGATATCGTGGGCGATTCGCTTCAGTTGGCGCGCCAAGCCGCCGAGGTCGAGGCCGATATTCTGGTGCAATGCGGCGTGCATTTCATGGCCGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 2668113-2669657 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2668113 37 100.0 38 ..................................... GCGCCGGTGAAGTTGGCGCCGGTGCAATCGGCGCTCCT 2668188 37 100.0 38 ..................................... ACGCTGGCACTATACGGTGCGTGGTCCGAGAGCTCCGA 2668263 37 100.0 38 ..................................... GTCCTCATCGAAGTCCTCATCCTCGACCGGGGCACCCC 2668338 37 100.0 38 ..................................... TCGAGGGATCCCATATCCAAAGCGCCGAACGAGTTGAA 2668413 37 100.0 36 ..................................... AAGCGTTGTCTGTCGGCAGGGCGCCGAGGACGGCAC 2668486 37 100.0 39 ..................................... AAGCACTTTCGTAAGGTTCACTGGGGTTACGGCGGCAAT 2668562 37 100.0 39 ..................................... GCTTCGATCGCACGGATCCGATCCTTCAATCCAGTCCGG 2668638 37 100.0 38 ..................................... CACATGGCGTGAACCTTGCGCGCCAGCGGATTGGCCGC 2668713 37 100.0 40 ..................................... CCGTCCTGGAAGAAGACAACCCATTGCGAGGGGGTCTCAT 2668790 37 100.0 43 ..................................... TCGAGCGGCGGGAATTGGCCCTCTTGGATGGGGGATTTTTCCA 2668870 37 100.0 35 ..................................... TTGTTCTTGTCTTCATCCGAGGGTTTGTTTGTCTT 2668942 37 94.6 38 .........C...........T............... AGGGTGGTGAGGAATTCATAGCGGCTGTGCGTGGCCTT 2669017 37 94.6 37 .........C...........T............... CAACAGAAACGGTATCAGCCATGGTAACTACTCCCAC 2669091 37 94.6 38 .........C...........T............... ATGGCTAATGAATGTATTGAACGTTTATTATCCAACAA 2669166 37 94.6 37 .........C...........T............... TCGGAGGTAACGCCATTGTCGGCGCCGTCGTCTTCGG 2669240 37 94.6 38 .........C...........T............... CTCCCAAGCCGCCACCAGGGCGGCTTTGGCGCGGGCGG 2669315 37 94.6 40 .........C...........T............... CCCGGGGGGTGTCGCGGTCTTAGTATTCCAGGATCCGCGC 2669392 37 94.6 39 .........C...........T............... GGTGTCGGCGACCATGCGCTGATCATTGCCGGTCGGAAT 2669468 37 94.6 40 .........C...........T............... GAGGGAGAGCCCACCGTACTGAAAAGCGAGGTGGCGCATC 2669545 37 94.6 39 .........C...........T............... TCGGCGGGCAACTCGAAGCAAAGGGCGCGGGTGGTGGTT 2669621 37 94.6 0 .........C...........T............... | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 97.4 38 CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Left flank : GCGGCCGGGCCATCCTCATTCCCTATGAGGTGACCTGGAAGCACGAAATGGTCGAGCTGCCAGCGGACGCGCCGAAAGCCTTCGCCACCTTGAACTCGCTCCGCGAGCTGCCGGCCTTCCTGGAAAACGGCGAGAACCGCCGCTAGCCCCCCCGATCCCCCACCCGCGCGGCGGCCGCCCAGGGAAAAGGGATTTTAAAAGGGGTCCGCCCCCTTTTCCTTCTTCTTTTTCCTTCATGTCCCGGCGTGCTCCCGGTGAAAAGCCGGTTCCCGAACCGTCGATCCTCGTTTAAACTGCCCCTACCGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCCTAGGTTACGACTCAAGCCAACTGTTTGAAATCGTTTAGAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCATTTCGCCCCCAAAAAACACCCCGCCCGCCGAGGTTACGACAAACCACCTTGTAACCACTTGAATAATAAAGCCTTTTAGAACCGGCT # Right flank : CTACTCTTCGCCTCCTTCGGGCTCACGGCTCGCGCCGCGACTCGCGCTAAAAAGGGGTCTGACCCCTTTTATCCTTTTTCTTTTATCCTCTTTTATCCCCTTAGGCACCGCGACCGATCAGAAAGGCGTTGCGCCGGGGCGCAACGCCTTGAGGGATCGCAAGATAATCCCCGCAGATCTTGGCGCCCGGGGGAAGCGCGGCCGGTCAGGCGCTTCGGCGCAGGCTGACCAGACCGAGGGTGGCATAGGCGAGGATGGTGGAGCCCGCCAGACCGATGCCCCAAATCAGCCCGACCAGCAACCAATCCACCGGCCCCCCGGCATCGGAGAAGCCCGATACGGTAACCCGGGCGGCCAGGACCAGGGCCAGGACGCCCCCGGCAAGGCCGATGAGTTCCGAGCGGACCAGCCGGCGGCTGTTGATCTTTCCCTCCTTGAGAAAAACGAACAAGGCGCCGCCCAGCCCAAGCAGGGCGAGGGCCAGCAGGATCCACAACACA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Alternate repeat : CTCGCAGCCCATGCCCCGCCATCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.00,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 10 2715965-2716300 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2715965 37 100.0 36 ..................................... AGGTGTTACAGGAGTCTCAACGACTGGGGTTGTGGG 2716038 37 100.0 36 ..................................... TTCGTATTCCCATAGATCTTACCCGTGGTCGTAAGG 2716111 37 100.0 41 ..................................... CGGACGGGCAGCTTCAGATACTTCAGGGCACTCTCGTACCC 2716189 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 2716264 37 94.6 0 .......T...............A............. | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 98.9 38 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : GATCCGGCCTTTATTGGCGATCGGCGACAGCCTTTCATCCGCCCCGCCACCCCAAGCGCGGCGATGATCCCCAAGCCTTCCTAACCGCCTTGATCGCCAAGGAGTGCTTGGCCCGCGCCCTGCCCCTCCCCGCCATCAAGATCATCTCGCTGCGCCGCGGCGCCCGCGATGGTCTGGCCGCCCTGGCCCATTTGACCTTCCCCAAGCCGGTAAGCGGACCGATCCTGCTTGGCCGGGACGCCCACCGGGGGGGCGGTGTCTTCCTCCTTGGGGCGGTGCGGCGGCCCCTGGCCGAAGAGGGCCTCCCCTCGCGCGAGGGGTCCGCTGACTCAAACGACTCGCGGAGCGCTCGCAATGAACCAATCATTTGATTTTCCCGTTCTTTTTGACACCGCCCCTCGAATGGCCGGCTTGAGGACAGCCCTTTTCAAGCCATTTTTTTCGACCCCTCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGCC # Right flank : CTCCTCTGACCCGCGCCGCTGTCTCCGCCTTGCCGAGATTAAAGGGGTTAAACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGCTGCCACAGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTTACTCATGGGGGGTTCTCTCTAAAAGCGGCGTCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAACCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCTGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAATGGGGGCGTGGCGAAAAGGCCCGCAGTGTGGATCTCATCGCCGGCCTGCGCGCCCATCAAGCCACGGAAAGCGGCCCGACTCCC # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 11 3524497-3525372 **** Predicted by CRISPRDetect 2.4 *** >NC_017584.1 Rhodospirillum rubrum F11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3524497 37 100.0 43 ..................................... TCGAAATCACCTTCGTCATCCTCGACCGGGATATCCCGGACAC 3524577 37 100.0 39 ..................................... GACCACGATCAAGCGCCCCAAGATGTGCTCGCAGACCAC 3524653 37 100.0 38 ..................................... AACGCGGGGCCGTGCAGGCCGTTCGTCTCGGCGTCCAA 3524728 37 100.0 38 ..................................... TTCTATCCTTGGATTGAGTGGGGCGAGAAACCCGCCCG 3524803 37 100.0 40 ..................................... CTGTAGGAGGCATAAAACTCTTCTCGAGTCAGGGTGTCGA 3524880 37 100.0 38 ..................................... CAAGTCAACGGCGAAAGCTCGCGCAAGTGTTTGACCAA 3524955 37 100.0 39 ..................................... CTTCCTCGGGCTCCTCGGGGTCTTCGTCGAAGCCATCAA 3525031 37 100.0 39 ..................................... ATTCTTCGGGTGAGGGATCCCAGGTGCCAAGAAGCTCGA 3525107 37 100.0 39 ..................................... CCCGAACCCCAGCTTAACGCGGCCGCTCTCGGCATTGTA 3525183 37 100.0 41 ..................................... TTGTCATACCCGGACCGAGCCGCCACGATTTTACGGGTGGC 3525261 37 91.9 38 ..........A........C.C............... ATCAGACCGCGTTGGTGATCAGGAAGCCGGCGCGATTG 3525336 37 91.9 0 ..........A........C...A............. | ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 98.7 39 CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Left flank : CCCGGCACCGTGCTCGCCACCGCCGACCGGGTGACCCTGGGCAGCCTGGGCGCTTTCGCCGTCGTCGCCATGGGGTTGCTGTCGTGGTGGATGGGCCGGGCCATCGCCCGCACCCCCTCGCCGCGCTAAAGCGCCGAGCAGGGAATACCGGTTTTCCGCGGTGTCGCCGCTCTCCTCTGATGACACCTCTTATACGGATACGATGCGTTCCCTGAAGTCCATCCATGCCCACCGCGCCAACCTGAGCGAACGCGTTGAAAAGCCGGTTCCCGAACCGAGGATCCTCGTTTAAACTGCCCTTATAGCGTGAGTCGTAACCTCAAAAACCGCCCAAAACCCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTGATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCTAAAAAATACCCCACCCGCCGAGGTTACGACAAACCACCCTGTAACCCTTTGAATAATAAGGCCGTTTAGAACCGGCT # Right flank : CCAGCCTGTGAGGCCGTCCGATACAGAGAGTCTCGATCAAAAGTTCTGCGTTAAAGGGGTTCCCTTTAACGCGGCGTGATCTACCGCCGGGGCAGGCTCTCGGCGAAGCGGGCGCTCAGCTTGGTGTAATGGCCACCGTGATAGCGGAAGGACCCCAGGAAATGCACCAGGGCGACCTCTCCGGGGGCTTGTCTGCCGAGGTACGAGATATAGCGCCCATAGGGCAGCATCAGCGCCTCGGGAAAATTGGCGATGACGAAGTTCGAGCAGACCTGCTCGCTTCCCCAGTCGCGCCATTTCGCCCCCAGCCTCGCCTCCATCAACGCCGAAAGCCGTTCGGCCAGGGCGCGCCCCGCCGTGTTGCGGGGAAATCCGGCGAACCCCGAGCAGCCCCGGCCATAGCGATGGTCGGCCAGCTCGGGGCAGTCCCCCATGGCGATCTGGGCGTGGGTTTGAACGTGGTCGGTGCGATTGGCCCGTGACAGGGCGGCGATCTCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //