Array 1 54688-53500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYID01000036.1 Escherichia coli strain B144-c1 Contig_0000036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54687 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 54626 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 54565 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 54504 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 54443 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 54382 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 54321 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 54260 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 54199 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 54138 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 54077 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 54016 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 53955 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 53894 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 53833 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 53772 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 53711 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 53650 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 53589 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 53528 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27038-27798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYID01000086.1 Escherichia coli strain B144-c1 Contig_0000086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27038 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 27099 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 27160 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 27221 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 27282 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 27343 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 27404 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 27465 29 96.6 32 ............T................ GCGACCACGCAGAGCGGCGACAACCTGACGTT 27526 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 27587 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 27648 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 27709 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 27770 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //