Array 1 2219-3929 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000034.1 Thermohalobacter berrensis strain CTT3 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2219 30 100.0 38 .............................. TATCTATATCAACAAATTCAGGTATTTGTTTAGTGTCA 2287 30 100.0 39 .............................. TAAATATCTTTAATTGCACTGCCTGATGTATCTGTTACA 2356 30 100.0 39 .............................. TGGATATAGCTTGAGATTATCGATGCCACCTGGATTAAG 2425 30 100.0 37 .............................. AGTCCTATAACAGTTGGTATATTAGCTTTAATTCTAC 2492 30 100.0 38 .............................. AAATGGGTGGCAATTTTATATTTGCCACCCAAATAATT 2560 30 100.0 36 .............................. TTTCTTCTGCCAATATCTCCTCTAATTTTCCATCTG 2626 30 100.0 38 .............................. TAGCGTGGTCTAATCCATCGAATAAATCGTCATGTTCG 2694 30 100.0 38 .............................. TTGGTAGCCAATGCACTATTAAGCATTAAAATTTCAAT 2762 30 100.0 36 .............................. AATTTTGATGATGCCGAGGTTGATTATTATGACCAA 2828 30 100.0 37 .............................. ATGTATTTTGTTATATCAGGGAATATACTAGTAAAAT 2895 30 100.0 40 .............................. CTTTATCCCAATTTACCACGCACTTGCCTGCCTCGTCATC 2965 30 100.0 36 .............................. CTGAAAGAACGAATAATACAACTAGCTTTGAACCTA 3031 30 100.0 38 .............................. TTTGATGGCTGGGAAAATAAAAAAATCGTAGGTCATTT 3099 30 100.0 38 .............................. TTCCAGCTTCCAAAACGACTAATAATTGCTGCATTTTG 3167 30 100.0 37 .............................. TTGGTAGAAGGGTAAAGAAAATGGCAATATACTATGA 3234 30 100.0 37 .............................. GAGAATTACAAGAAAAATTAATTAAACTAGGATATGG 3301 30 100.0 35 .............................. TTTAAAAGCATAGTCCAAAAATATGAAGATGAAGA 3366 30 100.0 38 .............................. ACCTGAGAGATGATTTTTTCCCAATCTGGTGTAAATAT 3434 30 100.0 36 .............................. TGGACTTTATTTCAAAATAAAAAACCGTCTCAATCT 3500 30 100.0 39 .............................. TTATATTGTCGCTGTTATATCTAAATGTTACAGTACAAG 3569 30 100.0 36 .............................. TTCCAATGCGTACAATCTAACCCTGATACTGTAACG 3635 30 100.0 38 .............................. ACGTGGGACGGAACTTATTTATGGAATACAGACAGTAG 3703 30 100.0 35 .............................. TATACACATACCTTAAGATTACTGTCAATAGATAG 3768 30 100.0 37 .............................. CAGCTTGCAAACAAAAAGGTAATGGCTGGCATTTAAT 3835 30 100.0 36 .............................. TCTTCATCTAAATACAGATACCTAAGCATGCCCATT 3901 29 80.0 0 .........G.......G.....-C.T..G | ========== ====== ====== ====== ============================== ======================================== ================== 26 30 99.2 37 GTTACTAGACTACCTATAAGGAATTGAAAC # Left flank : TTTAGAAAACATTTAGAAAAAGAATAAGTTTTTTAGATATGAAGGTTATTGTTTCTAAAGTTAGGGTATCAGGTCTATTAAATCTAAGAAGAAATTAGTTAAATTAAGAACATAAGAAATTTCAAAAACTGTATGGTGAATTTTTAAAGTAGATATAGATAAAAATTAATAAATAAATATACGCAACAAAAACTTGAAACTTTAGATGAAACAAATTGTTTGTTGAAATTAAAAGACTAATAAATTGATATTAATAAAGATGAGTATGTATTTTTGAGAAAATAATGATGCACCTAAAGTAAGCTTAAAAGTCGTCGACCTCCAGTAGTGCAAAAACCCCTGGGGATCGACGACTTTTTGTTTTTGAAGGTAAAAGTAGCTGTAATATAGTGTTTTAAAGGGATTGAAGGATATTTATATGGAAGATGGTCATAGAAAAAAGTGGAAAAAACTAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATGG # Right flank : GTAACTCAAAATTCAAAATGTAAAATGAAAATAAAATAATGTTGAAAGATGAATAATACTGTAAGGAATGGATAAAAGAATTAAAAAGCCTTCTTAAAAGCAATCTCAGGATTGCTTTTTTATTTGCTTTAGTAGCTATCTATATCAATTGACTTCATGAAATACTAATTTACATTTGAAACTAGTCCTAAAAGATATAACACACCACAACCCATTACCATTTTATACCATTACGTACATATAGCTTCTGCTATATCATGTGTTACCATCAGTGCAGTTTTCTTTTCTTTTTTAAGAATTGTTCCTATTTCATCGGCTATCCTTAATCTAGTTTGATAGTCAAGGGCAGAAAAAGGTTCATCAAGTAAAAGTATTTCTGGTTGTAATGCAAGGGTTCTTATAAGGGCTGCCCTTTGTCTCATTCCTCCAGAAAGCTGTCTAGGGTAATGATTTTTAAACTCACCTAATCCATAGGTTTCAAGGAGATTTTCAACAAAGGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 99646-101543 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000023.1 Thermohalobacter berrensis strain CTT3 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 99646 30 100.0 38 .............................. AATACAGGATATAGGACAATGTATCAGTTTGATAGTGA 99714 30 100.0 39 .............................. TCAACACTATTCGCAGGAATATTGCTGTGTTTTCTACCT 99783 30 100.0 38 .............................. TATCACTAAAAAACCAAAAACCTCCTAGGTCTATTTTG 99851 30 100.0 37 .............................. TAACCTGTCTTTCATCTTCGTCTAGTCTAGATATTGC 99918 30 100.0 35 .............................. CTCTACATGCTAAATCTTCGAAACTAATTCCCAAC 99983 30 100.0 35 .............................. TGTTCCTTCAACAATAAATGTGAATGTTGAGGTGA 100048 30 100.0 37 .............................. CATCTTTTAAATACTTACATAAATTAATTACTTTTTG 100115 30 100.0 38 .............................. GAAAGAAGTTTCACAAGCTAGCCGAACATTGTAGTTTC 100183 30 100.0 37 .............................. TCCCTTTGTGTTTTTATCCATGTAGAAATTGTTGTTG 100250 30 100.0 37 .............................. CGATATTTCAGAGTTGGAGGACTCCGAGATTTACAAG 100317 30 100.0 37 .............................. TTAAAATTGATGAATTACCTTTTATAAATTACACTAT 100384 30 100.0 36 .............................. TCATAGATTGCTTTTTCTTCATCAGGTAACATATCA 100450 30 100.0 38 .............................. TGGCTAAGATATATGCTCCAAATAAAGATTACACCGGC 100518 30 100.0 37 .............................. TGAACAGTTCGCAAAATTAGTAAGTAAAGCTGTCTTA 100585 30 100.0 38 .............................. ATAAAAAAATAGATGAAGTGTTCGATATATATAGTAAT 100653 30 100.0 38 .............................. CATCTTCCCAGTGAGTCATAACTTTCCTAAATCCCTCT 100721 30 100.0 39 .............................. AATCCATATTTTTCTACCAAATAATCAGCTGTTACATCT 100790 30 100.0 37 .............................. TAATAAATAATAGGCTTGTAAATATGAAAATATAGCA 100857 30 100.0 36 .............................. CTTTCAAACTGGAATATGCTATCCGTTTTACCTTCC 100923 30 100.0 38 .............................. TCATCACTCAACCCCCTCTGTTTTTTCTAATAAGTCAT 100991 30 100.0 37 .............................. TCATATAGCTCTAAATTATCAATAGCAACACCAACAA 101058 30 100.0 38 .............................. ATCAAAGAAAAATTGAAGTAAGGAGGTTTTATATGTAT 101126 30 100.0 38 .............................. GATGAAGCTTTTGAAGGATGGGATCAACTGGATCCTGC 101194 30 96.7 36 .................G............ ATAAAGATGGGTAAACTACCCCTCAATTTTTATAAT 101260 29 76.7 223 .........G.......G.-...AC.T..G TAATTGAAAATTGAAAATATAAAATGAAAAATAGGACAAAAAATGTGAAATATAAAGAAAGGAGAATAGGTACAAAAAAATATTTTAAGAAGTAATTTTAAATTCTAAATTTTAAACTTTAAATTTTACATTCCAGTAGGACTGACTATAAGGAACGTAAAATCAATTTTAAGTTCTGAATTGTGAATTTTAAATTTAAAGATGAAGGAAAGAGTATGTTTTA 101512 30 76.7 0 ....AA.....T.ACG.............A | A,C [101515,101521] ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 26 30 98.1 45 GTTACTAGACTACCTATAAGGAATTGAAAC # Left flank : CAGGTGTGGATAGTTTTTTTGCTTTTCTATATTTTCTGATTTTTTTACCCATTTCTACATATACATTAAGCATGTCCTTCACCTCCTTGATAAAAATTATTGACAGGAATAAGGTTTTTATACGGGAGATTTAGGTAGGTTAGATAAATACAATTAATATCTGTTTGAATTTTATTGAATAAAAATTTAAAAAAGCTCTGATATACTAGTAGTATTAAAAGATTTTATATTAAATTTAGTAAAAAATTCTCCTAAACAAAATATGTAAATATTTATAACGAATAATAGCATAAAAATAGTTAGGTCAAAAAGTCGTCGACCTCCAGTAGTGCAAAAAGCCTTGGGGATCGACGACTTTTTGTTTTTGAAGATAAAAGTAGCTGTAATATAGTGTTTTGAAGGGATTAAAGGGTATTTATAAGGAAGAAAGTTATAGAAAAAAGTGGAAAAAACTAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATG # Right flank : ATCTAGAATAAAAACTAAAAAAAGTTTAGAAAGAAATATGGGCTACTCAAACTATAATAACCATTAAGTGTTGTATAGTTTGAGTAGTTTTTTTATTTAATAATTAATATTTTTACACTAATAATAAGGGTATTTAATCGAATATAGATAAAATAAAAGGTTGCTTGTTTAATTAAAGTTAAGTTAATATTGAATAAATTGGGGGAGGAAAATGAATGAGAATATTCAAATTATAGCTCCTTATAAAGAACTAAAACATATATCAGATGAAGTACTTCAAGAGTTAAATATTAATATTGATACTACTATTGGAGATTTATGGAATGGTGTGAAAGAGGCAAAGCTGGCTAGAAAAAACAAAAAAGAAATTGTAATTAGTCGTGGTGGTACTGCACAATTAATAAAGGAAAATGTTGATATATCAGTAGTAGAAATAAAAGTTACAGGGTATGATCTTTTAAGAGTTTTAAGTAAATATATAGGGAGCAGGAAACGTATAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 108764-110269 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000023.1 Thermohalobacter berrensis strain CTT3 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 108764 30 100.0 37 .............................. AGGTATTAAAATCAGTATTTAAGTAAGAAAGAGAGAA 108831 30 100.0 38 .............................. TCTTTAGTTGCTTTGTTACCAAAATAATATCCTATCAC 108899 30 100.0 38 .............................. GTTTCTATCCGTACCACCCTTTCAAGTAGTTCATCAAG 108967 30 100.0 36 .............................. CTTTAAATTCGTTTTCTTCAAGTTTTGAATCTAACT 109033 30 100.0 37 .............................. CTGGTAAGTTGTTTGCTCCCTTAATATACTCAAAACT 109100 30 100.0 37 .............................. CCCACTATTTTAATTAAAGAAGTAAGTATTTTTCCTG 109167 30 100.0 38 .............................. TTTAAAAATTCTGTACTACTTGATGTTTTACTACCATG 109235 30 100.0 37 .............................. CATCAATAGACTAATTGAAAAAATGCCAGAAATAGAA 109302 30 100.0 37 .............................. TATGATACTTGTTCTGCTAAAACACTAATAAGTAACT 109369 30 100.0 38 .............................. CAGTACCCGGAAGTGATATAACCATTAAACAAGAAAAA 109437 30 100.0 37 .............................. ACAAAGATTTTTCAGACAAAATACTATGGGAATTAAG 109504 30 100.0 34 .............................. ACTCTACTTGCTGTTGTAATTCTTTTTTCTGTTC 109568 30 100.0 38 .............................. TGATGTAGATAATAGAGATGCTACAAATATGTATTTAT 109636 30 100.0 38 .............................. ATACATTCTATTTCTTTAATCGGTAATATTTCAGTACC 109704 30 100.0 37 .............................. ATGTAATACCAGTAATGAAAGAAGGAGATAAGGTAGG 109771 30 100.0 36 .............................. TCTTGCAACCTCTTTCATTTTCTCACAATTTAAACA 109837 30 100.0 38 .............................. TTGCCCCTGCCCTTTTTAGAATTAATAATGTTTTGTAA 109905 30 100.0 37 .............................. GAAAATGTAAATCAATAAATTCTTTTAGTAGAACAGC 109972 30 100.0 37 .............................. GATTTCGTTTACATGGGCGACTGGTTAGTAATCGACA 110039 30 96.7 37 .........C.................... TATAGAAAAGTCAAAAGAAAAACTAAAAACCAGTAAT 110106 30 96.7 37 .........C.................... TACTAGAGCTGTTGTCTGAACTGCTTGAGAAGCTGTA 110173 30 93.3 36 .........C.......G............ TGTTCATCTAAATAAGGTATTTGTCCTGTCTTTAGC 110239 30 90.0 0 .......................G.A...T | C [110262] ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.0 37 GTTACTAGAGTACCTATAAGGAATTGAAAC # Left flank : ATAGATATGGCTAGGGAAGATGGAATTAATGTAGATGGTCCAGTTTCTCCTGATACTATATTTGTGAAAGCTAAAAATGGTGAGTATGATATTGTTGTTGCAATGTATCATGATCAAGGACATATACCACTCAAATTATTAGGATTTAATACAGGAGTTAATATAACGGCAGGTCTTCCAATTATACGCACTTCAGTAGACCATGGAACAGCATTTGGGAAAGCTTGGAAGGGAACAGCTAATGAATTTAGTATGGTGCAAGCTATTAATTTAGCCTATAAATTAGCTTCTTCATGTAAGTAAATTAACAGTCGTCGACCTCCAGTAGTGCAAAAGCCCCTGGAGATCGACGACTCTTTGTTTTTGAAGGTAAAAATAGCTGTAATATAGTGTTTTGAAGGGATTAAAGGGTATTTATAAGGAAGAAAGTTATAGAAAAAAGTGGTAAAAACCAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATGG # Right flank : TCAATTTTAAGTTGTGAATTGTAAATTTTAAATTGAAAATACATATCGAAGTTTTTACTGTTGAGGAATTACAACTTCCTCAACTTTTTTTGTCTTAAAAAGAGGAATTTTAAGGATATAAATAGAAAATATAGTAATATCAGCAAAAGCTTGGAGGGGAAATATGAGATTAGAAGTTGATTTTACATTTAAGGATAAATTAATTTTACCAATCCATTATAATCACATAGTACAAGGATTTATTTACAATAACATTTCTGATGCTGCATTTCGTAAATTTCTCCATGATAAAGGATACAAATATGAAAAGAGAAATTTCAAATTATTTACATTCTCCAGAATAATGGGAAAATTTAAAATGAATAAAAAGGAATCTACCATTACTTTCTTTTCACCAATAAAACTTGTCGTTTCTTCAATTTTAGATGATTTTGTTAATGACTTTGTTACTACTCTAATGAAAAAGGAAGATCTTAGACTAAGAAATACACCCATCAATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 119053-122451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000023.1 Thermohalobacter berrensis strain CTT3 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 119053 30 100.0 39 .............................. CTTATGTCAAGAGTTACTGTATTTGAAAGCGTATTACCA 119122 30 100.0 37 .............................. TATAAAAAAACTTTCTAATACAGTAATAATCTAATGT 119189 30 100.0 38 .............................. AAAGAAGTAGATAAAAGATACAATTTGTTTTATGAAAA 119257 30 100.0 37 .............................. TCAAATTGTCATAATTGATGAATTTGCAGACCTTCAA 119324 30 100.0 37 .............................. CTCCATTGTATTCTATGATATGTGTTTTAGTTTCTGC 119391 30 100.0 37 .............................. ATAATCTTCCTAATAATCTTCATCATCTTCTAAATCT 119458 30 100.0 39 .............................. GTGAAAAAGCTAAGCAAGATATATTAAAATACTTAGAAA 119527 30 100.0 37 .............................. TATTGATATTTAAAAATTGTTAATGCTTCAGCTATAA 119594 30 100.0 36 .............................. AGCGTTTTCTATTATATATATAGTGGTTTATTCCGG 119660 30 100.0 37 .............................. CCATCTCTATCTTTGCCTAAATATCTTAATTGTCCAA 119727 30 100.0 38 .............................. TTGACGAGAAACTAGTAATAGAATAAGGAGGCGACACA 119795 30 100.0 35 .............................. TATATTGGTGTTTTTCTGGCCCGTATTTGCTGCAA 119860 30 100.0 38 .............................. CATAATTTATCAATTTCAGTTGTCATATCCTTACCATA 119928 30 100.0 37 .............................. TCTAACTACAACACAAGTATAATTTTGCTAAAACTAA 119995 30 100.0 38 .............................. TCTAATTTTTTAAGTTTCTTTTGGGCTTTTTCTTCATT 120063 30 100.0 36 .............................. AATTAAGTGTTTCTAACGCCCTATCTATTTTTCTTA 120129 30 100.0 38 .............................. ACTTGTTCTTCTGCAATACTTGAAGGCAATGTAACTGT 120197 30 100.0 39 .............................. TGTTATTAGCAACGTCTACTGTTACTCTATACTTCCTTT 120266 30 100.0 36 .............................. TATAACTCTCTTTGTATATCTTCATCTGGATGTTCA 120332 30 100.0 38 .............................. AATTCTATAGATATTGAAGGTAAACCCATTTAAAACTC 120400 30 100.0 37 .............................. ATAGAAAAAAACAAAAAGACAGGAAAAGAACCGAGCA 120467 30 100.0 38 .............................. GCAACTGTATAGCTGATACTGCATGAAAATCCTGTAAC 120535 30 100.0 37 .............................. CCAATCCATTTGTGCCTTCTGCCATTCCACTACTATT 120602 30 100.0 41 .............................. TGGACATAACAATTTTCTTCATTGCCATATCCACTCCAAAA 120673 30 100.0 39 .............................. TCGATAGTGAGAGGTTTTTCATATTGATATATTTTAGGC 120742 30 100.0 36 .............................. ATCTTCCTTTTAATTCTTTCTTAGTCGGATATTTAC 120808 30 100.0 39 .............................. TATCCTTTCTCTCTCAAATATTGCACTTGGTTTCCAAGC 120877 30 100.0 37 .............................. AACAATATAAAACAGACTGCCACTCAAATTTAAAAGT 120944 30 100.0 36 .............................. ATCTTCCTTTTAATTCTTTCTTAGTCGGATATTTAC 121010 30 100.0 38 .............................. CTTTTCCCATAATTTGTAACAACCTGAAATGCTCCTTG 121078 30 100.0 37 .............................. TGTATAAAAAATATACATAAATGTATAAATAAGGTAC 121145 30 100.0 38 .............................. TCGTGATGAAAATGGTTGGAGGTATGATGTTGCATATG 121213 30 100.0 38 .............................. TTGCACATGGAAATATAGTGAAAAAGACTTATGTAAAA 121281 30 100.0 38 .............................. CATTGGAGACTTTTTCTAAGACGTGGACGGCTGAGGAA 121349 30 100.0 39 .............................. GCGACCGTAACCTCTGTACGTGTATGGAGATTTTTTACA 121418 30 100.0 36 .............................. AAGGTCTATTTCAGACCGATAATAGCGCCGTAAATG 121484 30 100.0 36 .............................. AAAATATACTAAGAGGACACCCGCCGAATAGATTAA 121550 30 100.0 36 .............................. GTTTTACAAGCTACTAAGCAATAGTAAAAGGAGGTG 121616 30 100.0 36 .............................. ATGCTCTACAACCTACAATTCTACCTTGTTCATCTC 121682 30 100.0 37 .............................. TAACTACTTTTTCCCTTGTTTTCTGCCATCCTTCTAT 121749 30 100.0 38 .............................. TTGTATCAAATTTTGCTGTGACTGTCAAGTGTTTTTTT 121817 30 100.0 37 .............................. AAATCACAGTGTCACAGCGTCACAGCGTCACAGTGTA 121884 30 100.0 38 .............................. AAATGTTTACACCTCCTTTTACTATTGCTTAGTAGCTT 121952 30 100.0 37 .............................. CTATTTGTTTTGAATCTTTATATAGTTTATCTAGTGT 122019 30 100.0 38 .............................. TTGCACATGGAAATATAGTGAAAAAGACTTATGTAAAA 122087 30 100.0 38 .............................. CATTGGAGACTTTTTCTAAGACGTGGACGGCTGAGGAA 122155 30 100.0 39 .............................. GCGACCGTAACCTCTGTACGTGTATGGAAATTTTTTACA 122224 30 100.0 36 .............................. AAGGTCTATTTCAGACCGATAATAGCGCCGTAAATG 122290 30 100.0 37 .............................. AAATGATGAACAAACGTTCACTGGAAAACAGAAAAAC 122357 30 100.0 36 .............................. TTTCTTGTCTTTATTTTCATCTTATTTACCTCCCTT 122423 29 86.7 0 .......................-CA...G | ========== ====== ====== ====== ============================== ========================================= ================== 51 30 99.7 37 GTTACTAGAGTACCTATGAGGAATTGAAAC # Left flank : ATGTTTCCAAATGGTAATGAGGTGGTATTTTGTTTGTTATTTTGGTATATGATGTAGGTGTTAAAAGGGTAAATAAAGTATTAAAAACATGTAGAAGGTACTTACATTGGGTACAAAATTCAGTTCTAGAAGGAGACATTACTGAAGCAAACCTGATAAAACTAAAAACTGAACTTAAAAGTATTATAAATGATAATGAAGATTCAGTAATAATATATAAGTTTAGAACTAAGAAATATCACAACATAGAGACATTAGGGATAAAAAAAGGTGGGGAAGAAAATATTTTATAAACTTTAATAAACAAAAAGTCGTCGACCTCCAGTAGTGCAAAAACCCCTGGGGATCGACGACTTTTTGTTTTTGAAGATAAAAGTAGATGTAATATAGTGTTTTGAAGGGATTAAAGGGTATTTATATGGGAGAAGGTAATAGAAAAAAGTGGTAAAAATCAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATGG # Right flank : GAAGTTGAAAATTGAAAATATTAAATAGGCAATAGAAAAGGATTTAAGTTACAGAGGTGGAAAAATGGACTTAAAGGGAGTCTTAAATATTTTAATAAAAATAAGTATCACATTTTTGTATAGTGCAGGTATTATAGGAATGATTTATGATTATGCTTATACTTCAGAAAGAGGATTTACCTTTTATTTATTAATTTTTATAATCGCAGTACAAGCAACTATGTTGCATAAAAAGAAGAAATTTTCTAATGACTAGATATTTTGTAAAATAAACAATAAAGAACTAATAGGTGTAATAGATTGGATTGTTAGTATACCTATGGGTAATTAAAATTTATTAAATCCCTTCAAAAATGTTTTTGAAGGGATTTAATTTTTTTTGCAGAAAAATATATTATTAGATAGAAAAGGGGGATAACAGGATGGAATTTGATGCAAAAAAATTAGCCAAATTAAGAGATAAACCTAAAGAGTTAATTAAGCTTATTAATAATAGAGAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 124561-127149 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000023.1 Thermohalobacter berrensis strain CTT3 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 124561 30 100.0 38 .............................. AAAATTAAGTGAGGTTATATTATGGAATTGATAATTGC 124629 30 100.0 38 .............................. TAGCTTCTCCATGCGATTGTGTTTCTGCTTTGTGGTTG 124697 30 100.0 38 .............................. CAGTCGCATGCAACCACAAAGCAGAAACACAATCGCAT 124765 30 100.0 38 .............................. TTACATACGAGAGAGGGTGTATTGGATGGAAAGAGGGA 124833 30 100.0 38 .............................. TCTATATCTAAGGCTGTATTGCTTATTTGTACCTCTAT 124901 30 100.0 37 .............................. TGACATTGGGGGGTAATAAATATGATTGAATTTGATA 124968 30 100.0 37 .............................. TAGACAACCTCTAACTCATTTAGTTGTTGAGGGCTAA 125035 30 100.0 36 .............................. AGCAAATCCCTTGCGTGTTTTGGTGTCAAATTCATT 125101 30 100.0 38 .............................. TTTCATCAAATTCATAATCGTCTATAACTTGTAATAAC 125169 30 100.0 37 .............................. CTATCTCAACATCATTATGACTACTAAATTTTATTAC 125236 30 100.0 37 .............................. TCTAGCCTCATTCATTCTTCTAAAAGCTCTTAAATAA 125303 30 100.0 37 .............................. TCAACAGGAAGGAATAATCCTTCCTAAACTTGTGCTA 125370 30 100.0 37 .............................. AACCACAAAGGAACACAAGTAACTCAAGATCATTATA 125437 30 100.0 37 .............................. GAGATAAAGATGATGCAAATTTAACCTTTAATGTTGA 125504 30 100.0 37 .............................. TTCGCAGGTTGTAGAATGGGCTTCTTGTTCAGGAAGG 125571 30 100.0 38 .............................. CCATCTAAAACTAAAGTATAAGATACTGCTCCTCCCCA 125639 30 100.0 39 .............................. AGGATTTCGACGGAGTACCGACTGACCCTGACGACGTTA 125708 30 100.0 36 .............................. GCCCTCTCAAGTACATCTTTTGAAGGAGAGGATAGG 125774 30 100.0 37 .............................. GATGGGGGAGTAATGAAGAGATACAAGAATTAATTGA 125841 30 100.0 39 .............................. TCTTATATGGACTGCTGGAAACGATGGGGCAGGCAGTGG 125910 30 100.0 36 .............................. TAACAAAGTATTACTGATTGACCTTGACAAACAAAG 125976 30 100.0 38 .............................. GAAAATGTACCAGAAGGTGCGAGTATATATGGGAAAGT 126044 30 100.0 38 .............................. TATTGGCTTTCGGTTAAGTGAGGCACAAGGGCTTCTAA 126112 30 100.0 38 .............................. TCACCACACTTCTCACATTCTCTCTTTTCTTCTATTAA 126180 30 100.0 37 .............................. CAGAGGAACAAGTGTCAAGGTTGGCAACTGGATTAAT 126247 30 100.0 38 .............................. ACCTTGCACATTGTTTGTATCAACCTGAAATGCTCTTT 126315 30 100.0 37 .............................. AAAAATTTTTCTAAAAAAGAAGGATATTGGACAAGCT 126382 30 100.0 38 .............................. CACAAAATAGCCAACGAGGTGGGATACCCTGTGGAATA 126450 30 100.0 38 .............................. TATTTCCCATCATTGAATACTTTTTTCTTTTTCCTCGC 126518 30 100.0 36 .............................. CTAAAAGAGCTAAAAACAAAGCTAAATTTAAGCTTT 126584 30 100.0 35 .............................. ATTCTAAAACTTTTCATATTCATCCCTCCTAATTT 126649 30 100.0 37 .............................. CTAGAAAAATCAAGAATATGTATAGCGATAAGGAAGT 126716 30 100.0 38 .............................. TCATAATGTAATCTAACAAAAGAAAATGGATCTGCTGC 126784 30 100.0 38 .............................. TTTGCCCATTGAAAGGATCATATATCAAGGGGAACTGA 126852 30 100.0 36 .............................. TTAGTTCGTCTACTCTTTTTTCTGTTAATCCAGATT 126918 30 100.0 38 .............................. ACTTTATCCCACTGTACCATGTCATGCACAGTGGCTAG 126986 30 100.0 35 .............................. CATACTTGTAATCTTTTCTTTGTTTTTTTCCTTAT 127051 30 100.0 38 .............................. CCTTTTGATTTTACGTACTTTCTAACGTCAAGATACTT 127119 30 83.3 0 .......A.G.......G.......A...T | C [127142] ========== ====== ====== ====== ============================== ======================================= ================== 39 30 99.6 37 GTTACTAGACTACCTATAAGGAATTGAAAC # Left flank : CTAAGTTTAATACATGGATTTAGAGTTGTAAGTGCACCAAAGCTTGATTATGAGGTAGCAGTACTTAATTATATTTGTTTAGCATTTGATGTTGATAAGCAAATGGTAGAAAATATTATAGAAAAAGAATTAAAGTTTAGAAACTTCAATGAAATAATTTGATAAAATAATTAATATCTAATAGTAAAGTATACACAATTGAACTTGCTAGCAAAAATGTCTCATAAGATATTCAATCAAACAATTAATCATATAAAAGTTGGCATGTTAAATTTCGAAGATACAAAAAGTTCAAAATTGGCTAATAATAGTCGTCGACCTCCAGTAGTGCAAAAACCCCTGGGGATCGACGACTTTTTGTTTTTGGAGGTAAAAGTAACTGTAATATAGTGTTTTGAAGGGATTGAAGGGTATTCATATGGAAGAATATTATAGAAAAAAGTGGTAAAAACTAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATGG # Right flank : TCAATTTTTAATTGTGAATTGTGAATTTAAAAGTAAAAATTTAAAATCCAAATGTAGTTTACTGTATTTAGAACCTACCAATAAAATCCTTGTCAACAAAATATAACCATATTAGACAAAGGATTTTATTTTTTTATGTAGAAAATTATTAATAATAGTAATTAATGAAAAATTTTATATAATGTTATTTAAAATTAAAAAAAGGAGGTGGGCAGATGTCTCAAAATTATCAAATCGCCCTTGCTGCTTTAGTACATGATATTGGAAAAATAATGCAAAGAGCAAAAGAAAAAATTAAAAGTAGTCTAAAGGGACAGGAAAATGTATTTTGCAAATATACAAATAATTATTACAGTTATAAACATTCATTGTATACTGTACAGTTTATAGAAGATTATTTAAATAATATCTTAGCTGAAGAATACCTAAAGGTTTCAGCTAAACATCATGTCCCAGAAACAGAACTAGAAAAAATTGTAGCTAGGGCTGATAGACTTTCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 134365-137278 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCIB01000023.1 Thermohalobacter berrensis strain CTT3 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 134365 30 100.0 35 .............................. TATTACAAAGTAAGGGATGAAGATAAGGCAACAGA 134430 30 100.0 38 .............................. AGTAATAGAGAGGACATAAAGGAAATGAAAGACAATCA 134498 30 100.0 39 .............................. GAATCCAGTAACATCTTTTATTTCATAACTATCAGCTTC 134567 30 100.0 37 .............................. GAAACATAACAACCTATCTCTTTAATTGTAGTTGTAG 134634 30 100.0 37 .............................. TCTAATCTATTGGCAATTGAATGATAATTAATATCTT 134701 30 100.0 35 .............................. TTGTGGAGGTCGGCGACTTTGTCATTGAAGCAAAT 134766 30 100.0 38 .............................. TATTCTTCCCATGTTTCAGAGCTGAAGAAGTTCTTTCT 134834 30 100.0 37 .............................. ATAGTAGAAAAAAGAATGCCTCCAACAAGATTAGTTA 134901 30 100.0 37 .............................. TAATTATTTATTATCCTTTGCCCTACTTTCTTTGCTA 134968 30 100.0 39 .............................. TTAAGACCCTGTATTCTTTCCTTCCAACCACTAGATAAA 135037 30 100.0 37 .............................. CTGTAATGCTTCGGTATAATACACTGCCCTGCTCTTT 135104 30 100.0 35 .............................. TGTGTCAACCAATGATAAAAGCGACTTTTAGCACG 135169 30 100.0 36 .............................. GATTTCTCGCTGAGGCAGTAGCAGACCCGCTAAACT 135235 30 100.0 37 .............................. TATTGTATGATTATTGGACAAGAGAGCCACGTTTTAA 135302 30 100.0 36 .............................. AATTAAAATGGTCAATCTTTGGACATCCTTTATTTG 135368 30 100.0 38 .............................. GGAGTTCCAGTTGCATTGACTAGAGATAAAGATATTTA 135436 30 100.0 37 .............................. TAGGAAAACCATATACTCCGCCGAAAACTGAGATAGA 135503 30 100.0 37 .............................. ATTTCATTGAATAATCAATTGCCTTTAATCCCCCATC 135570 30 96.7 38 .........C.................... TCAGCCCATTTTTTATCAGTACAATAATTTTTATTAAT 135638 30 96.7 38 .........C.................... TATTCCACATTCAAAATTTTTCCCATTGTTCCACGTGA 135706 30 96.7 38 .........C.................... TTTGTTCTCTTAATTGTTATAGCCATGCTAATGCCACC 135774 30 96.7 38 .........C.................... TTAGAAGGAATGGCAGGTGGATTTTTGACAGAATGTTT 135842 30 96.7 71 .........C.................... GCCTCTTGCCAGTCCGACACAGAAAACAAATCATAATTGCCTGTGCCGACTTGATTATTATCTTCATAAAG 135943 30 96.7 37 .........C.................... TTTGTATGCTGCTTGTATGGTGGTTTTTATACATCCA 136010 30 96.7 38 .........C.................... TAACCCATAAAAACTAATGATTCATTTAATCCATTTAC 136078 30 96.7 38 .........C.................... GATTTTTTTAATTTTCTTTGTTATTACTATTATATGCA 136146 30 96.7 36 .........C.................... TCAGTATTACAAAGAAATTTGAAAGAAGGGATAAAA 136212 30 96.7 38 .........C.................... TTTTCTGTTATAAATTCTTTTATTATTTTAAAATCCAT 136280 30 96.7 58 .........C.................... ACAGAAATGCAAAATGAACTTGCAGGAACAACGCTAATTTATCAGTTAGCAGAGCCTA 136368 30 96.7 39 .........C.................... TATAGCTATCACTAGGATTATGACTGTTGCATTGGCACG 136437 30 96.7 37 .........C.................... GAGGGCTGGAGAAAGAACTTCTTCCAGTCTGAAACAT 136504 30 96.7 40 .........C.................... GAATAACTATATTTTTCATAATTATCAACTCCTTTTATTT 136574 30 96.7 37 .........C.................... GATGTTACACAAACTGCTGAACAACTTGTAGAAAATA 136641 30 96.7 37 .........C.................... CCATATTAGAAACTACGCCTATTGCATGTGAAAAACC 136708 30 96.7 38 .........C.................... AAAAGAAAACCATTTTTCAAAAACCCTAAAGATAACCC 136776 30 96.7 37 .........C.................... ATTAGTGAATTTTCTATTTCTGGCATTTTTTCAATTA 136843 30 96.7 39 .........C.................... TTGCTTCTAGCCCTCTAACAAGATATGCGACAGGTGATA 136912 30 96.7 40 .........C.................... AACCACAAAGGAACACAAGTAACTCAAGATCATTATATAC 136982 30 96.7 37 .........C.................... ACATCATCAAAAATATCTCCTGTTTCGATAATGCTAA 137049 30 100.0 37 .............................. TATATAGTCTTATTTCCCTTTCTATTATATATAGTGG 137116 30 100.0 35 .............................. TAAAAATCTTCTGCTCTCATTGTTACTAGCCATGG 137181 30 100.0 38 .............................. GTGGATACATATTTTTTCATTTTATTTTTTTCTTCTTT 137249 30 90.0 0 .......................C.T...T | ========== ====== ====== ====== ============================== ======================================================================= ================== 43 30 98.2 39 GTTACTAGAGTACCTATGAGGAATTGAAAC # Left flank : CCACAAAACCTTCAAAAAATATGGGGCAATATAAACCCTGAAGGGAAACTACCAAAAGATATATTAGTGGAAATTGTGAACTGGATAGAAGAAAACTCTAATGAAAAGGATTATGTACTTGTTCAAGGGGATTTTGGAGCAACCTACTATATAGTAGATTATTGTTTTAAAAAGAATAGAATTCCAATTTATGCTACATCTAAAAGAGATGTAGAAGAAAAAGTAATTGGTAACAAAGTAGTTACCAATAGAGTATTTAAACATGTCAATTTTAGAAGATACGAAAAGTTTAAAGATTAGTAGAAAAAAAGTCGTCGACCTCCAGTAGTGCAAAAACCCCTGGGGATCGACGACTTTTTGTTTTTGGAGATAAAAGTAGATGTAATATAGTGTTTTGAAGGGATTGAAGGGTATTCATATGGAAGAATATTATAGAAAAAAGTGGTAAAAACTAAATTGACAAAAAATAGTAAACCTGATAAAATCAATATATGTAATGG # Right flank : TCAATTTTAAATTGAGAACTGTGAATTCTAAATTAGAAGAGGAAAAAGGTTAGCCTAAAGTAAAGATAATTCAACATTTAAAATTTAAAATTAATAATTCAAATGCAGTTTGCTGTATTTGTAAGCTACCTATGAAGGAACTTAAGAAATTGAAAACTGGAAATGTAAAATGGAAAATAGAAGAAAATGAGTACATAGGAAATATCTTAACAAGCAATTTTAAATTTTAAACTTTAGATTTTACATTATAATAGGGCTAATTATAATAATTAATCTTAATAGTTACTGATGGATAGATAATCCATCAGTTTTTTATGTGCGCCGGGCATGCGTAACAACTAGGTGGTGAAAGTCCACTGTGGGGGCTGACCATGCCAACCACTAGCCGAAGGCTGTCCATCGTGAGGTGGAATCTGAAGGAAGCTGAAGGCAAAATCCTGGTCCGAGGTACACGAATCACATTGGAGGCTGTATAAACTGGGTGAGTTTGCATAACAAAA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTACTAGACTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //