Array 1 1319153-1320340 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR782232.1 Escherichia coli isolate SC467 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1319153 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 1319214 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 1319275 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 1319336 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 1319397 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1319458 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1319519 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1319580 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 1319641 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1319702 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1319763 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1319824 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1319885 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1319946 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 1320007 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 1320068 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 1320129 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 1320190 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1320251 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1320312 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1346042-1347290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR782232.1 Escherichia coli isolate SC467 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1346042 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 1346103 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 1346164 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 1346225 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 1346286 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 1346347 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 1346408 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1346469 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1346530 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1346591 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1346652 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1346713 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1346774 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1346835 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1346896 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1346957 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1347018 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1347079 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1347140 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1347201 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1347262 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //