Array 1 20437-20710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYF010000002.1 Deinococcus sp. 12RED42 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20437 29 86.2 32 ATCC......................... CAGATCCACCTGGCGTTCGAGGGTGATAGCCG A [20439] 20499 29 100.0 32 ............................. ACCTGGAGATGACCTCACAGGTGGAAGGCGGC 20560 29 100.0 32 ............................. CCACGGCCAGCGGGATTGGAGCGCAGATCAGC 20621 29 100.0 32 ............................. GACGCGCCGCTGGGCCAGGCATGGCAGTGGTA 20682 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : GTAAGGCGAAGCTGGAGCCACGAGGAAGTCACGTCGCAAGGAGAGGGAGTGGGAAACAGCGCGGTGTGGAACCGGCCATGTCCGAAATGCGGACGAGAGCGACAACCGTCGCGTGCGAGCGGACCTCACAAAGGAGCGACTTGACCCACTGCCCTTCTGCGACGGCCGACATCTCTAGGTGGCCTGTGGCAATAGACAGGAGAGAGTGCCCTAGCCATCCGATGGCGACGATGCGGTAAACCTTGGCCCGGTTTACCGCACTTTTTGCGGTAAGTCGGAGGCGGTGCCGACCAAGAGGTACGAGGATTACCATCCTGAGCCCCCAGGGCCAGGTCGACAAGTACCGTGGCAAATTGAAACCACTGTATAGAGATGAATGGATTAGTCCAGTGGCAAAGTGAAAGTTTCACGAGTCAGTTCCGTGGCAAAGTGAACGAGTCCAGTTTCAAACTGAAAAAACAGGGTGAAACCCTCTATATCCAGTACCAAACCAGACTGAA # Right flank : GAGCAGCCCACCATTTTGCTGAGGGTCTGATAGACGTAACTTATCGCCTGTGGAATACGATCTATGCGCTTGATTCCATATCACTCGAAGACTTCTGGATGTCAACTGACGGATCAAGTCCTGATCGGCTGTGCTCTCCTATGCTTAGCGGAAGAGCAGATTGAGGCAGGCGTCCACGGTCGTGTCGGCCCTCGGGTCCTTCAGGCAGTCGAGCAGGCTCGCCCAGTAATCCCGCATCACCACATCGAACAGGTCCAGATCGTGCTGGGTCACGCCATCGTTCTCGAAGTACCAAGCGCGATTTGCTTTCTGCTCGGCAGTCGCGGCCAGCAGGGCCTCCTGAGATACGTCCTGCAGGTTCTGGTGCGTCTCCTGCAAGTGTCCAACCGCAGTTTGGAAGGCCGATCGAAAGAGGCCGATGGCGTTGCCCTGATTGTCCAATTGTCGTTCGCTGTTCATAGCTCTCCTGATGCGGCGCGTGTGGTGCGAGTCATTATCGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6125-6458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYF010000038.1 Deinococcus sp. 12RED42 38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6125 29 100.0 32 ............................. CGGACTAGGACAATCCAGAGGTCTTCGGTGCG 6186 29 100.0 32 ............................. GTGCGGATTCTCCCACCACGACGCACGCACGC 6247 29 96.6 32 .................T........... CGAGAGCGGGTTAAAACAGGGCGGGTTGGTTG 6308 29 100.0 32 ............................. TGCAGGCGCAGCCGCAGCGGCATCGTGCTCCC 6369 29 100.0 32 ............................. CCCTGCACGCCGTCCAGCGTGAGCCCGCCCAT 6430 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : TTCCGGGACGGTCCTTGTGAATTGCGCCTGAATGGACTACAGGCAACCTCTCATGCGGCTGCCGCCTGGTCAGGGCAGATACGTCACGCCGTCGACTTGCCCTCCCGGGCTGAGCGCCGTGACCATGGTGATGGAAGCGGCGTTCAACCTTTGTGCACTGTGCGGATCAGGCTGAACTCTTACACTTGGCAGCATGAACGACGAGCATGCCACCGACGACCTGGTGCTGCTGGATCTGCACTATTCCGGGGTGCTCTCGCGGACGAGGTGCAGGCACGTCTTCAGCTTGATCCGGCGTTCCAGATGGCGGCTGAGCAGTACCTGGCGGACTGGTCTGAGCTGCTTGACGTCTTCGACCCGGATGGACTTGTGCCGGACGGCGCTGAAGACCGGCTGATTGCGCGACTCCGGGCTGACGTCCACGAGTAACCACCGTCCTCGACAGCTGGGTTTTGCGCGTGTTCCGGGCCTGATTTCAGGCCCGGTTCTGTGTGCTAGCG # Right flank : TGATGACCTGCTCCCGCCTGGCTCTTTGCGTATGCTCGCTAACCCGTCATCCACCGGATTTCACCGACTTACGCAGTCTCTTGGACGCCCGAGTGTTGGCCCACCGCGGGTGGGCCACGAGACGAGCATGACCATCAGCACCAGCAGCGTGTTCTCCTTCAAGACGGCGAAGTTCCCTGGGCTCGGGAAGGGCGGCCGCGTGCAGATCCCACAGCATCTGCACAGCCAGCTCGACACGTCCAACCGGATGCGCATCATCCCCTGGGCTGCGGCTGAAGCAGTCGCCCAGGTCCTGCTGGGCCGCGTGGAGGTCGAACGCATCCCCAACCGCCTCACCGTCCAGACCATCGACAAGGAAGGCCAGCCCGTCCTCATGGCCTCCCACCCCGCCCAGGCGACGTGGGTGAATGCCGGGCAGACCGTGCGCCCGTACATCCTCCTGATCGCCGAAGCCCAGCTCGCAGCCAAGCACACCGAACTCGCCGAACGGTGGGGCGCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //