Array 1 72090-71107 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNED01000002.1 Streptomyces spororaveus strain NBRC 15456 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 72089 29 100.0 32 ............................. TGGGTGTCGATCGCAGTGACGGTCCCGGCGGT 72028 29 100.0 32 ............................. CGGACCCTCCGTGCTCGTGCGGAGCGCACACC 71967 29 100.0 33 ............................. CACTCCAGTCCTGCGGCCCGGAGCAGTGCGCAG 71905 28 75.9 93 ..........TG.G....T.....-..TG GCCGTACGGACGGCCTCGGTGTCAGGATTGTCGGGTTCTTAGGAAGTGCTGCAGAACAGCTCGTGGCCGTCGTAGGGTGCCAGGTCAGCCAGT T [71899] 71783 29 82.8 32 ...T.......G..C.......C..A... GTGACGCCGTCGAGGGCGGCCCAGAGTGCCGT 71722 29 86.2 32 ...........G..C.......C..A... GACCAAGGCCCCGGCCACCCCGCAGAGGGGAG 71661 29 93.1 31 ...........G..C.............. CCTAGGAGACCCGTATGACCAGCCCGATCTC A [71636] 71600 29 89.7 32 ...........G..C..........A... GAGTACGACACCCGCTGGATTGAGAAGACCGG 71539 29 89.7 32 ...........G..C..........A... GAGCCCTTGGCCCGCGCCCCGACGGCGACGGT 71478 29 86.2 32 .......T...G..C..........A... ACCGAACGCGCTGGCATGGCGGCCCGCGGCAA 71417 29 86.2 32 ...........G..C.........GT... GACTGCCTCATGCAGTCAGCCATGGCCAACAT 71356 29 86.2 13 .............CC.........GT... GCAGCGCCGCGGC Deletion [71315] 71314 29 86.2 28 ....G......G..C..A........... CTGAAGGCCCTCACGCAGAGAGCCGCAA 71257 29 89.7 32 ..............C.G.......G.... TGGATGCCGCTCCTGATCAGCACGCCGGCCCA 71196 29 93.1 31 ...........G..C.............. CTCGCGGTCGCATCCTCGGACGGACCCTGCT C [71187] 71135 29 82.8 0 ..........TG..C............TG | ========== ====== ====== ====== ============================= ============================================================================================= ================== 16 29 89.2 35 CTGCTCCCCGCACATGCGGGGATGACCCC # Left flank : AGGGAAGGGCCATTCACCTCGACGGCAACCTTTCGGACCTCCACGGCACCGTCCGAAGCAGCAACACCATCGTCCTGGACAAACACGTTCTTCACCGCACGGCCGCCGACGCCTCGGAATAGCTCGCTTGGCTTTGGTCTCGCGCCCGACGCAAGCCAGCGGCCTCAGACACCGTAACTTTGGCGGCACTGTGCCCGGGCAGCCTCAATCGGAGCTAGCGCATCGTCCGGCACCGCGACTGCTCCCCCGCCCCTGCTGGCCGGGCGTGTTGACGGGATCGAGGTTGCGGCTCCGGACCGAGGGCGTCGAGGGCTTGCTCGTGGCGTGCATGCACGAAATGCCGGATTCGGCGAAAGTGCCCATGGGTAGCGGCTGGCTCGCCTAAAGTCCGTGCACGCGGGGATGCCTGCTCGCCGGATGGTGCCAGTGTCCGTATTGCCGGATTTTTAGGAAGTGCTGCAAAACAGCCTGCCCAGTCATAAAGTGCCAGTTCAGCCAGT # Right flank : GACCCTCTCAGTAAGGCGCGTTCAGATCTGGTTCGGTCTCCGGTGCAGCGAATTCGCCGGCGTCACCGGAGGAGAGTGATGTCGATTGGCGCCAGCTGCTCGTCGGCGAGCTACTCCGGGTCGAGGAAGGCCCGGTTACTGAGCTCCCGCAACACACGGGTCTGCCGTGCGGCCGCCTCCGCGATGTCCAGGGTCACCTCTCGGGTACGAGGGACGGCTTGGTGGGCCGCGAGGGCCCGGTGAAAGCCGTCGGGTGCCATGTCACGAGTTTTCACCGGGGCTTCAGACCCACCCGCAGCCCTCGGTGCCGGAGCGGCCGTGCGGGGGTCGGGCACAGAGGGCTGGCCGACGGCCAGGACCCGGATGGCCCGGACGGTCTGAGTCCCGGCCGCGTGGTTGGCTGCGGCAACGATGCGGGCGCTGATCAGCCTCAGCTGGGTGGCGTAGGCCGGCGAGTCGGGGCGCAAATCCAGCTGGCCGGTCTCGGGGTCGAAGGCGAC # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACATGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [19-20] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87920-88750 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNED01000002.1 Streptomyces spororaveus strain NBRC 15456 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 87920 29 100.0 32 ............................. GATGAACGACATCATCGCCGGTGATCCGACTC 87981 29 100.0 32 ............................. GGCCATGTCCTCACGTCCCCTTCTTCATTGCG 88042 29 96.6 32 ...........................T. ACTCTCACCGAGTTCGCCGCTCGCGGGGAGAT 88103 29 100.0 32 ............................. CCCCTTTGACGGCTTGACCGCCAGGTACGACC 88164 29 100.0 32 ............................. ACGAGCGAGGCCGACTCCGATCTTCAGGCGCT 88225 29 100.0 32 ............................. TGGGCCCGCTCCGGCGGGGTCTCCTGGTCCGG 88286 29 100.0 32 ............................. TACGCCCGCGCCGACGGCGGCCCGCTGACCGA 88347 29 100.0 32 ............................. CGAGGGGAGCCCCCGTCCACCGGGGCGGGGTG 88408 29 100.0 32 ............................. GCCGGATGCGGCGGGCTTTGGTCTTCCTGGTG 88469 29 100.0 32 ............................. GACCGACTGGAAGCAGCCACGTTCAGACACCT 88530 29 89.7 32 .............AG..........C... AAGTCCTACCGGCACGGAGACCGGATCTGCTC 88591 29 100.0 32 ............................. GAGAGGAGGGGCGCTCGGACCCTGCCAGGACC 88652 29 93.1 39 ........T........A........... CAGCGGAGCCCCCATTGACGAGTGACGAGTGCGCCCGGG 88720 29 89.7 0 ..A........G.............C... | GC [88731] ========== ====== ====== ====== ============================= ======================================= ================== 14 29 97.8 33 GTGCTCCCCGTACGCGCGGGGATGGTCCC # Left flank : GGCGAGCTCAACCGCCAGATCGCCTACAAGGCCGCCTGGCACGGCGCCACCCTCGCCCGCGTCCCCACCTTCTTCCCCTCCTCCAAAACCTGCTCCGCCTGCGGCTGGATCAACACGGAACTGACCTTGGCAGACCGCGAGTTCGCCTGCCGCTCGTGCGGTATCGTCCTGGACCGGGACGCCAACGCGGCCCGCAACATCAAGAACCACGCCATACCCGTCCAGCCCTGAGCCGGACCAGTCCCCTGGAACAGGGGCTGCAACGCCCGTGGACTGCACGTAAGCCCCGGGCACCGCCCCGTGCGGTGCCCGGGCAGGCAGGACGAAGCGGGCAGGCAGGACGAAGCGGGAAGGCCGACGCACCAACAGTCGGTCACCCTGGGACAGCAATGCCCCAGCCATCCCTAACTCCACAGCGTGTACATACGGGAGCAATGTCCGAATCGGCGAAAGTGCTCTCACAGCCAACCGCCGGCCCACAGCACCGCAGGTCACGAAGT # Right flank : CGGGCTGCCAGTCGGCTTCTGGAGCCTCTCCGGGAATTCCCAGTACGCGCAGCCCCGAACCGTGCGGTCCGGGGCTTCCTCGCGTCTGGGGTCAGCGGTCGCTGGGGGCGAGCAGGCTGGTGACCTCGGCGAGGGCGGCCGCGCCGGGCTTGAAGTACTTGCGGGCGGCGCTGACGGACTTGTGGCGAGACTTCGCCATGAACAGCAACAGGGAGACGCCTTGTTCTCCGAGGTGGGTGAGGCCGGAGTGGCGGAACTCGTGCGGGTCCCAGCCGGTGCCTTCGTCGCCGCCGACGCAGGTGTGGCGGTCGAGCAGGGCGCGGAGCTGGCCGTAGGAGAGGCGGGCGAGGCCGGTGTCGGGGCAGGCGTCTCGCGGGGTGAGGAGTTTGCCGGGGCCGGGGCGGCGGTGGGTGACGAGCAGCGGGCCGCGGGTCCGCTCGCCGATCAGGCGGGGCAGCAGCCGGGCGGTGCCGGCGTCCCAGTAGATCGTCTCCGTGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 304-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNED01000007.1 Streptomyces spororaveus strain NBRC 15456 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303 29 93.1 32 ....C....................G... CCAGCTCCACCAGCCTGAGCATGGCCGTCGAA 242 29 96.6 32 ............................C ATCGAGGCGACGTGACCACCGACGAGGTCACC 181 29 100.0 32 ............................. CGCCTGGAACAGCTCGGGCTCGGCAGCCCGGA 120 29 93.1 32 .............C...........C... CCCCAGGACACGACTCCCAGGGCTTGGCAGTC 59 29 93.1 0 .............CT.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCGACCCCGCGCTCGCGGGGATGCTCCG # Left flank : CTCCCCGGCTCCCTGAGCCTCACCCTCCCCGACGCCGAAGCTGCAGACGTCCTCGACCGCCTCCCGGACATCGCCGCCGCCACCGGCTCCGCCTGCAACACCGGAATCGGCGAGCCCTCCCACGTCCTCACCGGCATCGGCCTCACCCGCACCCAGGCCCGCCGCACCCTGCGCCTGGGCATCGGCCGCAACACCACGGCCGACGAAGTCGAGCGCGCCGCAGCACTGATCGCGCAGGCCGCTGCCAGGCAGAGGCCACCTCGTTCCAGCGCCGCCTGACGAGGGGCCGCGCGTCGGGGGAAGGCCTGACCGTATCGAAACCTCCCGCCGGCCCGACCGAACGTTCTCGTGGGGATACTCCGCCAAGGAATGGTCGTCTGTGTGGACGTTCGCCTCGTGCTGTCGGCCTGTGGACTTCGACGGGCCAATTCTCGCTGCCGCCCCAGTATCATCTGAACGAAAACGGCCACCTGGGGCGATAAAGCCCCAGCTCAGAAAGT # Right flank : GAGGGTCCGCGCGATCTCGTCGGCGCCGGTC # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCTCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8457-7147 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNED01000007.1 Streptomyces spororaveus strain NBRC 15456 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8456 28 100.0 33 ............................ GGGGGTCGAGGTCAGGTAGGTGCCGAGCATCTC 8395 28 100.0 33 ............................ GCTGGTGACCGGATGGAAGTAACCGGCGGGCAG 8334 28 100.0 33 ............................ GTCCAACGCCGGGTTCCGCACGGTGCCCCTCAC 8273 28 96.4 33 .....T...................... GGCGGTCGAGACGCTGCACGGCCTTGAGGTCAC G [8252] 8211 28 92.9 33 .............T...A.......... CCAGTCCCGCAGCCCCTCCGCCTGCTGCCGGGC 8150 28 100.0 33 ............................ GAGCGGCACGCTCGCCCACGCCACCTCGTAGGC 8089 28 100.0 33 ............................ CCCCGTGGAGCGTGCGCCGTGGGACCTCGCTCC 8028 28 96.4 33 .......G.................... TCTCCTCGTCCTCGTCGTACTGGAGGTCATCGC 7967 28 100.0 33 ............................ GCGGCGCACTGCTTCGGACACGGTCCCCGAGGG 7906 28 100.0 33 ............................ GGTCGAGCAGGGCGTCACCGCGGCCAGCCCCCA 7845 28 100.0 33 ............................ GGAGCAGCCCCTGACCGTGCCGGCCACCGGCGC 7784 28 96.4 33 .C.......................... GGCCATGCCGTCCGTCGCGATGCCGGTTCCGCC 7723 28 96.4 33 .....T...................... GGCGTACGTGGGTTGGACGCTCTCGGGCAGCTG 7662 28 96.4 33 ........................C... GGGCGACATGGGTGGATTGGCGGCCGCCGGCCA 7601 28 96.4 33 .......T.................... GCCGCTCGGCATCCTCGACCCGCTCATCCGCTA 7540 28 92.9 34 ..........T...T............. GAGGGCGGAGGAAGACGCTATGACCGAACTCCCC 7478 28 96.4 33 .......T.................... GAGCTGGGCGAGGACGACGTGGTCGTAGGCGCC 7417 28 89.3 33 .....T.......T............T. GGACACCACGTCACGGGGCTGCTACCACAACGC 7356 26 92.9 33 ...........--............... GAAGAAGGCCGCCGTGCTCCCCCAGCCGTTCAC 7297 28 96.4 34 .............T.............. GCAGCAGCTTCTAGAGGAGACCTCCGCAGAGACT 7235 28 92.9 33 ..........T...T............. GGCGTTGGGCTCGGGGTTGTGCGTCACAGGCGC 7174 28 89.3 0 .....T..T.....T............. | ========== ====== ====== ====== ============================ ================================== ================== 22 28 96.4 33 GTCGACCCCGCGCCCGCGGGGATGGTCC # Left flank : ACAGAACCCCACCAAAACACAAACCGACCGCATTGCGGCCGCCGCCGACGGCAAGACCCGCTCGTTCCGCATGGGCCACCGCACCGCAGCCCATCAGCTTGCGTGGTTCACCGACCGCGTCAAGGGCTTCGGCTTCGAACTGAAGGAGGTACCGGCATCCGCCCCGGCCGCGCCCAGCATCCTGCCCCTGACAGCCCCCGCCGCCGAACCCGAGCCCACCCTCGACGTCCGCATCACCGCCCGCGACCGACGACAGTTCACCAAAACCGACAGCTCCGGCACCGGCAACACGACAGTCACCATCACCACCGCTACCTACGAGGGCACCCTCACCGTCACCGACCCGTTCACCCTGGCCCGCACCCTGCTCACCGGCATCGGCCCCGCAAAGGCGTACGGCTGCGGTCTCCTCACCCTCGCCGCCGCCCAGTAGCACCCCAGCTCACGCGACGTTGTGCCCATCGACCGCGCTGACCCGCAGCCCACCACCGAACCCGAAA # Right flank : GAGCTTCACGAATCCGATCGTGTTCTGGCAGGGGCGGAGGTGGTGCAGCGGGATGGCCCGCGCTCGGGTGTCGGCGAGGTCACTAATGCCGTGCGTGGCTTTTCCTGGATGGGGGGCCGTGCGGCATGAGGGGGCTGCTGCCCTTGGATGCAGCCTTGGTTCCGGCATTGCGGTGCTGCTGGCACGGTTGCCGGTGTGATCGGCTAACCGATTCGGGTGGGATTTGTGTTTCTGATGGCGCCAGTTGAGGCGCCATCTCTAGGCTCGAACCCACGTGAGGGCCCGGCTGTCTGGCCAGCCCATGACGATCTGGTGCAGGAGAAGTACGTGGTCGACGGCAAGCTGGTACGGGACCGGATTCCTGAGATTATCCGTGTGGGCGGAGCCGAGCCGGAGGTCTATGTGGCCGATCCGGCGGAGTACCGCGAGCGCCTCCGTGCGAAGCTGACCGAAGAGGTGGCGGAGTACATGGCGGCGGACGAGACCGATGCTCCCGAGGA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGACCCCGCACCCGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18880-18607 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNED01000007.1 Streptomyces spororaveus strain NBRC 15456 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18879 28 100.0 33 ............................ GGAAATGACGTCGTACTCCTGGGACCCCAAGGC 18818 28 100.0 33 ............................ GGAGGCCATCACGTTCGCCGAGCAGCTGAACAA 18757 28 100.0 33 ............................ GAGGGGAGACCCACGGCGTGGAGGTCCGAGTGC 18696 28 92.9 33 ...C..........C............. CGCGATGCGGAACGTGGTCACGGCTCGTCCAAC 18635 28 92.9 0 ........T................C.. | C [18620] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.2 33 GTCGACCCCGCGCCTGCGGGGATGGTCC # Left flank : TCAAGGTCTTCCTCCGCGGTTCCAGGCCAGGAAGGGACCGAGGCCGGGACGAGCTGATCGAGCGGGCCGGCGGAAATGCATCGTCGTCGGTGTCCAAGCGCACCACCCCCGTGGTGGCGGGCGAGAAGGCCGGCTCCCCAAGGCCGAAAAACCGGGCATCCGTATCCTCGGCCCTGAGGAATGCGCCGGCCTCCTCCCCACCACCTAGCTTGGTTGTCGGTGCGGCCGCGCATGCTAGGAGTTCGCCCGGCGTGAAGGAGGACCGTGACTCGGGGTATCGGTATGCGGCAGAGAACGGGATGGAGAAAGGGGCAAGTAGCTGCTGGGGAGACTTCCTGATGAAGCAGCACACCTCGTGCGGTCGCCGACGAGCTCGGTGTGATTGAGCGGTCGGTGGCAGCCCGTCGACCTGGACAGGGTGTTCCTCTCGCCCCGCCCTCCAAAAAAGGCAACTGAACGAAAACACCCCGCTCGGCCGATAAAGTCGCAGCTCAGAAAGT # Right flank : GCTGCTCCCAGGTGATTCCAGGAGGAGCGGGTGTTGTGGGTGTCTTCTTGGGATCTGGGCGGGGTGGGGGTTGTGTCAGTGCCCTGTCATACGGTTGTGGTCATGCTGTGTACCTTTACCCGCCTTGGCCTGAGTGCCGAGGAGATGGATCGGCTCGGTTGCCTGTGGGGGAAGTCCGCCGGGCGTGGCGGGGGGACGGTGAACCTGCTGCTTTCTCACATGCTTGATACCGCGGCCGTGGCCGAACTCATCTGGGACCACTACCTCGCTCCGGCGACCCGGGAGATGCTCGACCGGGTGGCGGGTGATGGGCGCCGGTTCTTCGCGTGGGTCTGCGGGATCCATGACTGCGGTAAGGCGACTCCGGCGTTCCAGCGGCAGGCTCCCGCTGAAGCCGCTCGTCTCGCGGAGGCCGGGTTGGGCTGGCGTGAGGGGGTTGTCACCGCCCGGACCTCACGGGAGTGGGCGCACGACAAGGCGGGGGGCTTCCTGCTCCGGAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //