Array 1 8-461 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYDY01000002.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P079 SEENP079_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 69 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 130 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 191 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 252 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 313 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 374 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 434 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGTGCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17130-18685 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYDY01000002.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P079 SEENP079_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17130 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 17191 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 17252 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 17313 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 17374 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 17435 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 17496 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 17557 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 17618 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 17679 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 17740 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 17801 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 17862 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 17923 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 17984 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 18045 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 18106 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 18167 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC G [18188] 18229 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 18290 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 18351 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 18412 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 18473 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 18534 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 18595 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 18656 29 100.0 0 ............................. | A [18683] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 315111-315810 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYDY01000047.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P079 SEENP079_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 315111 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 315172 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 315233 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 315294 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 315355 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 315416 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 315477 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 315538 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 315599 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 315660 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 315721 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 315782 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : AG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //