Array 1 872-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXG01000006.1 Brevibacterium sp. LS14 42_1349_129505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 871 29 100.0 32 ............................. CACGCAGCGGACATCCACCCGGCCTTCGGCGT 810 29 96.6 32 ............................T GGCCGAAGAGGGTTGGGTGCCGGTCCCGTCGT 749 29 100.0 32 ............................. CACATCACCGGCTTCCTGCGCATGTCGAAAGT 688 29 100.0 32 ............................. AAGCGGTTTGCCTCGTACGCCAAACCGATACG 627 29 96.6 32 ............................C TCGTCGAGGAGGGCACGCACGAGCTTGAGATA 566 29 100.0 32 ............................. GTCTACCAGACTCACGCGCACATGCCGGTGAC 505 29 100.0 32 ............................. CACGCGGATGATGAGACCTTTCTCGCCGGCAG 444 29 100.0 32 ............................. CGTGCCGCTCCGGGACTCGAACCCGGATGTCT 383 29 100.0 32 ............................. CGCCCGAACGGGGGCATGGCGGCGCGCTTGGA 322 29 96.6 32 ............................C TCCGCAGGCAGCTCGAGCTGAGTCATGCCGTC 261 29 96.6 32 ............................C AGTCGTCCACTCCGCGTCATACCCGAGCGAGG 200 29 96.6 32 ............................T CCCACAGTTGCTCGCACTTATGCGGGAATTGG 139 29 96.6 32 ............................T GTCCCCAATGATCTCATCCGGGTCCTCAGGAT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGCTCCCCGCCCCCGCGGGGATGATCCG # Left flank : ACGATCATCGAATCGATCAGGGACCGACTCTTCACCCTGCCCGATCCCACCGTCGTCCTCACCGGCCACGGCGACTCGACGTCGATCGAGGCGGAGAAACCATCGCTCGAGGAATGGATCAAGCGCGGGCACTAAGGGTCGAATCTGGGCCGAGGTCTCTGGATTGAGGGCTCGAGCTCCAGCGAACTGGGCACTCTAGAAACTAATACTTTGGCGCCCCGGAGACGTTAGTCGTCGTCTTCCCGGGTGCGCCGCGGTGCTTGCAGACAGTCGGCTGACGATTTGCTGTCGTCTCGCGGGATCTGCAGGGAGCGCGGCTTCGGCTTTGGGGGTGAATCTTCGATGGCGCACCCTTTGTTGTTTGCCTGAATCACGCCGCAGGGGGGTGCCGATCGTGGCCACACCTCCATACGCGGTATGCAATGCGAAACTCATTGCAGATATCCCGCACGTGTTAGATTCTTGCTGATCAGCAAG # Right flank : GACCGATGCGGGTGCATATCAATGCAGGACTGCGTGCTCCCCGCCCCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-5195 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXG01000039.1 Brevibacterium sp. LS14 223_6633_2196885_124_183_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53 29 96.6 32 ............................T GCCTGGTATTCGGTCATCCAATCGGGTGTGGT 114 29 96.6 32 ............................C GCCGCGAACGTGCCCGGGATGACCTGCACGAG 175 29 96.6 32 ............................C TTTCCACGTCCCGCTGACGTGTAAAGAAACCG 236 29 100.0 32 ............................. TTGACGAGCTCGGGGCCGGATTCGCCGACGAT 297 29 96.6 32 ............................T GGACGAGTAGTAGACGCGTTTCATCTGCGACA 358 29 96.6 32 ............................C CAGCACCCGACGTTCAGCACCCAACCGTTCGG 419 29 96.6 32 ............................C GGAAACGGCGACCTGCTCGCCCGGCTGCCCAT 480 29 100.0 32 ............................. CCACGCCTCGATTCGGGTGTCAGGCATTGTCG 541 29 100.0 32 ............................. ACCCCCAGCCGATCAAGCTGGGGATCTTCACG 602 29 96.6 32 ............................C GCGCTCGCCCGGTACTGGGACAGCTCGACGCG 663 29 96.6 32 ............................C CCGTGGCTGCCGATCGACACCATGCCACTCAG 724 29 96.6 32 ............................C TTCAACGCGGCGAACCTGGCGATCGTCATCGG 785 29 96.6 32 ............................A CTGTCTAAGGTCTAACTAGACGAACAACGAAA 846 29 100.0 32 ............................. GGAACGATCCCGATTCCTCCGGCCCCCAAGGG 907 29 96.6 32 ............................C GAGGGTGTACCGTGCCGCGAGCCACTCCTTAC 968 29 100.0 32 ............................. TCTACAATTTTGCCGTCATAGTGATGCATCCT 1029 29 100.0 32 ............................. TTCCACCCGGTGCCAGTGGTCGCGAAGGTGTG 1090 29 96.6 32 ............................C TCTCACACGAGATTCTGGCCTCGGTCGATGTG 1151 29 100.0 32 ............................. CTGGGGTGAAAGCCCAGAACGATGCGGCCCGC 1212 29 100.0 32 ............................. ACCCCCAGGGGAAGCCGATTTTCAAGCCCTGG 1273 29 96.6 32 ............................C GCCAACATGCTGGTCAACACTCAGACCCAGCA 1334 29 96.6 32 ............................C CGCTCGATGCAGTGAAAGAGCAGTGGCCGACG 1395 29 96.6 32 ............................C CCGCTCTTGTCTGTGGAGCGACCATCAGGGCG 1456 29 100.0 32 ............................. CGTTCGCCACCGGTGGGGTGTATGGGCCGGTG 1517 29 100.0 32 ............................. TCGATCGGGAAAGATCAGATCGCCCGCACCCG 1578 29 96.6 32 ............................C ACCGCCGAATGTGGCCATGGCAGTGCCAACCG 1639 29 100.0 32 ............................. ATGGGCGGCGACATGCGCCTCTACGTCGTCGC 1700 29 96.6 32 ............................C TCGTCGAGGAGGGCACGCACGAGCTTGAGGTA 1761 29 96.6 32 ............................C CTCTACCTCTCCGGGGGTGAGGCGATCATGCG 1822 29 96.6 32 ............................C ATGGTCAGGCCGTCATCGGCCCAGCGGCCGCG 1883 29 100.0 32 ............................. ACGTTGAGATAGCGCGTCATCAGCTCGGCGTG 1944 29 96.6 32 ............................C TACTCGCCAGTGACCACGACGATGAGGAGACC 2005 29 96.6 32 ............................A TGGGTGCAGCCGGTGGATGCGACGACCGCGTA 2066 29 100.0 32 ............................. GCCGTCCGTTCCCGGGTGTTCTGGATGTTCCT 2127 29 96.6 32 ............................C TCCCCGTTCGCGTGGGAAGTGAGAGTCTTGAA 2188 29 100.0 32 ............................. CTGGGACGTGAGGCCATCCTCAGGGAGATCAT 2249 29 96.6 32 ............................C CAGGACATGTCGTTCGACCCCGACAGGGTGAG 2310 29 96.6 32 ............................T CAGTGCGGGCATGGAAGGGCTGATCGCGCGAT 2371 29 96.6 32 ............................C GCGGACACGGTCATTGATCGGTGGTCGCGGAT 2432 29 100.0 32 ............................. AAGTGGTCCACCGCTGAGGGCGGCGCAGATAC 2493 29 100.0 32 ............................. CCGGAGGTCGCGAAAGCACTCGCCAAGTGCCT 2554 29 96.6 32 ............................C AGGTCGGCATATACATCGAGTGTCATCGCTGC 2615 29 100.0 32 ............................. CTCAAATCAAGGAGATGAAGGCGGACTTCGAC 2676 29 96.6 32 ............................C GGCACCGTCGTTGAGACATCGCCCGACATGAC 2737 29 96.6 32 ............................T TCCTTTGGTGAGTGGTGAGTGGTCATTGCGTG 2798 29 100.0 32 ............................. CCTGGGATGTATTCCCGAACGTGGATGGTGTC 2859 29 100.0 32 ............................. AAGCTCACGACCGCTGAGTCATACGAGTCGGA 2920 29 96.6 32 ............................C GTGAAGCCGATCACGTACTACAGCACCGCCGA 2981 29 100.0 32 ............................. CCCCGCAGCGCCGCCTGCGCCGTGTTTGTGGT 3042 29 100.0 32 ............................. GCCAGTGGTCCGATCCTCGTGCTCGACGGCAT 3103 29 100.0 32 ............................. GCACGGACTGAGGCACAATCGGGGCCGCATTG 3164 29 100.0 32 ............................. TTCCCCTCGGCGACGCTCAACTCCGCCTACCG 3225 29 96.6 32 ............................C AATGGTCACGCCAGCGATGGTGCCGACAGTAG 3286 29 96.6 32 ............................C ATGCCGGGGTACACCCTTCGCCATGTCAGCGG 3347 29 100.0 32 ............................. GGTCTCAGTCAACGCTCGCGCGGACCGTCTCA 3408 29 100.0 32 ............................. GTGGTGAGGCTTGTGGTGCGAGACGCACCAGG 3469 29 100.0 32 ............................. CGCAATGAGCGACAGACAGAGTTCGACTACAT 3530 29 96.6 32 ............................T GCCTATATAGGACACATTGAGAGAGTGGCGGC 3591 29 100.0 32 ............................. ATGATGACGACGAGGACGGGGATGATGAAGAG 3652 29 100.0 32 ............................. GGAGAGACCTCTCCGAGCTGGCCCTGAGGGTG 3713 29 96.6 32 ............................C CAGTGTTGCTGAGGTCGCCGCTAAGGCTGGTG 3774 29 100.0 32 ............................. GCACAGGAACTCAAGGGGATCAAGGACTCGGT 3835 29 96.6 32 ............................T CACCAGATGATCGAGGACCACTTCGAAGCCAT 3896 29 100.0 32 ............................. TCCGTCGGGAATGGGGGTCTCAAGCCATCCGT 3957 29 100.0 32 ............................. CAGGTCACGACGTACTCGATCAGATCAGGTTC 4018 29 100.0 32 ............................. CTCGGGGATATGCGGCGTGGCGCTGACACGAC 4079 29 100.0 32 ............................. AACGGCACGGTCGCGGGACCAGCGAACGAGGT 4140 29 96.6 32 ............................C ATGCACTACCTGCTCACGCCCGCCGACTGAGC 4201 29 96.6 32 ............................C GAATACGGGTACGCGCCGATCACGGTCACGAA 4262 29 96.6 32 ............................C TCGTCGCAGAGGTAGTCGACGGTCCAGCCATC 4323 29 96.6 32 ............................C GTCGACTCCATCGCCTTCGCGAGGTTCGCGAT 4384 29 96.6 32 ............................C TCCTCTGGTGAGTGGTGAGTGGTGAGTGATCG 4445 29 96.6 32 ............................C ATGGCGGTCAGCGCGTGCCCTTTTTTGTGTCG 4506 29 96.6 32 ............................C TACTTCTCTGGCCTAGCCTTCGACGGGACGCA C [4521] 4568 29 100.0 32 ............................. GGATTGCGCGAAGCCCTTTCGGCTTCGTCCGT 4629 29 96.6 32 ............................C AGGTCAGCGAGCGTTGCCATGTCGCCGGTCCT 4690 29 100.0 32 ............................. GCCCTGCAGCGCCGAGTCGGTGCGAAGGCTGA 4751 29 96.6 32 ..A.......................... GTCGCCCTTGAACGTGGACCCGTAGAGGGTGA 4812 29 93.1 32 .......T....................C GTCATGGCGAGGGCCTCGCGGGCCTGGGTGAC 4873 29 96.6 32 ............................C TACAGTGCCGCCGACGTCTACGCGGCCACCTA 4934 29 96.6 32 ..A.......................... GCCTCGACGAAGGAACTGGTGAGGTTCGAAAC 4995 29 86.2 32 ...G.....A.G................C CAGCTCCTCACGGACGCTGAGGTGCGGTTGAT 5056 29 93.1 32 ........T...................T CTGGGCAGGTCGAGGGGGTACGGTGCGTCCTT 5117 29 79.3 21 ......G....G.T.......T.....GC TCGAAGCGCCTCCCGGCTCAA Deletion [5167] 5167 29 72.4 0 ...G.T....TG.A.T........C.T.. | ========== ====== ====== ====== ============================= ================================ ================== 85 29 97.3 32 GTGCTCCCCGCCCCCGCGGGGATGATCCG # Left flank : GCCCCCGCGGGGATGATCCGACCGATGCGGGTGCATATCAATGCAGGACTGCG # Right flank : GGTGTCTCCGGTGGCATATCGGCCGATGTGCACGTGCTCCCTTGCGATTCGCAGCGTAGTTCTCATGTCGAAGAGAGAGGCCGATTAACTGCCGTTGGCGAGCGCCCGTTACAAGCATTGTCAAGCAGCCGCCGGGGGTCATTGCTTCGTAGAAGATTACGCAATTGACCACCGCCAACCGAACAATCGGGGCGCCAGGCCAATGCATGAGTTTACGGTGTCGCGATCCGGGGCCCTCGGTCCCAGGGGAGGATTGAAACCCCGCTTAGGCAGGGAACAACGCGTCGGCTTACCGATATTTCGGATCATCCCAGCAACAGTGACCGGGAACTGGGTGGTGTCATAGCGTCGAAGCAACACTCCCGGTCGGCGGGGGTCTGATCGGTGGAGTGTGCAGATGGCGCGGGTGGGGTTGTCGTTCAGCGACAGGTCGGAGATCTCGGCGGCCTCGAAAGCGGGCTGGTCGGTGCGGAGGATCGCCCGTCACCTGGGGCGTTGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //