Array 1 18-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIN01000012.1 Desulfonauticus submarinus strain DSM 15269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 100.0 43 .................................... CCATCTATTTTTCTCCCAAAAATAAAAGAGCGCTCCAGTCTGT 97 36 100.0 40 .................................... TGGCCTTCATAATCGAAGGCCTTTTCTGGGCGCTCCACGC 173 36 100.0 41 .................................... AGTTTTCCAATAAGTGTTGTATGTTATCCAATTGCTTTTAG 250 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 99.3 42 ATTTGAATTGTCCCTTGATGAAAAAAGGATTGAGAC # Left flank : GTTTCTATAAAATTCCCA # Right flank : TAATAGTTTAAAGCTATCAAAGCTACCTTGTTTTATATTTTTTATTGAAATTTTTATTGAAAAATTAAATGGAGCGTTGACTTTTAGATTATCATATTTTTAGCAATAAATATAAATTTAATAATTAATATTGTCTCAATATTGTTTTTTCCCTATTTAACTATCTTTAAGCTAAAAAGGAGGAAAGAAATGTGGTTCGATGGATTGTGAAAATTTTATTATACAAGGAGAGGATAAATGAAACAGATAAAAGAAATCATCCAAACAACAATTAAAGATTTTGTAGAAGTTATAAAAATTCCTAGAACAATTAGAAATACCTTTAAACCAAAACTTTTATTAATTTTATCTCAAAATTTAGGCAATATCCCCAAGGATTCTAAAATTAATTATATAGAAATATCTGATACAGATGGGATGTTATATTTAGATTCTGTATTTTTGATTTATCTTCCATCTAAAATAACCAAAGCACTTTGTTTAGTAGTTAAACAAAATCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATTGTCCCTTGATGAAAAAAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 214119-213622 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIN01000003.1 Desulfonauticus submarinus strain DSM 15269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 214118 29 100.0 37 ............................. TTTGCGGACCTTGTTCTCTAAGGTCTTTTAATGATTT 214052 29 100.0 39 ............................. TGCTGACATAAAAATGGCATGTAATCTTAAACTTAAAGA 213984 29 100.0 40 ............................. TTTAAGGAGAATATAGATTTTTTTAACGACAAGGTTTTAG 213915 29 100.0 37 ............................. TCTTTAAATACAACCTCTTTTCTCCCGATAGACATAG 213849 29 100.0 37 ............................. CTGGTAGAATAATATCCCATATAAACTCCTTCTTTCT 213783 29 100.0 39 ............................. CTTCCACATGTTTCTGCCCTTTCGCCACAATTCAATTTC 213715 29 96.6 36 ............................G CTTGGCTCCTTTACTCTTTTAACTTGCTTGTTTTGT 213650 29 75.9 0 T......T.......GT.G.A....A... | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 96.6 38 CTTCTCAGAGTAACTACGAGGAATTGAAA # Left flank : AATATGGTTTAAAAAATTTTTTTAAA # Right flank : TGGGCTCTTAGCACCCGGCCTATATATGCCAGGATATCTCCTGGAGTTTTGGAGGTTATCATGGATTCAAACTCCCAGGTAGCTCAATGGGCAACACACAAGGATGCCCCGGCACACAAGACCATAGACCGGGCTCGTCGGCTGCTCAAACCAGCGGGGTTTAATCCATGTATTGTAGCAGAGTACCAGGCATTTCCAGGGTGCTTTTCCTGCCACTTGGCAGAACCAACTTTGGCCCCGATGTTCTCCAACGGCAAAGGCTGCACCAGAGAGCTGGCCCTGGCTAGTGCCTACGGAGAGTTCATAGAAAGGCTGCAGTGCTACTGCGACGTCAGGCTGCGGCATCTGGGACTGATAGTTAGCAAATCCTCTTTCTTTTTTCCCAAGTCTATGCCCACTGAACTGGTGGTTGACAGTCATCCCCAGATCATGAAGGAACTTTTACCTCCAGGCTACTATCCTCCTGTTGATGAGCTTGAATGCCTGGAGTTTTGCGACCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCAGAGTAACTACGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIN01000017.1 Desulfonauticus submarinus strain DSM 15269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 100.0 37 .............................. TTTTTAGGATCTCTCACCAAAGCAATTCTCCGTTTTA 68 30 100.0 36 .............................. ACGAACTTTTATCAACGTTTTGGCATATTTATTTAA 134 30 100.0 37 .............................. ATTAAGAAATTGTGTTGTGCTATCTACTTGGTCATCA 201 30 100.0 36 .............................. ACAGTAACATCTTTAATATTAACTTCATTTCCTGAT 267 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 37 CTTCTCAGAGTAACTACAAGGAATTGAAAC # Left flank : | # Right flank : CACATTTTCTGCGATGGGTGTGGGGTGTTATTTATTTTGAGAAAAAGGAAAGAAGGGATTTGGGGTGGGTCAAATGTGAGACAAATATAGAACTGGTGCGGGATGAGAGGATTTTAATCTCGGAGAAATAGTGAAATTTTAATTTGAGAAAAATTGCGAAATTTTAACAAAAATTTGCATGTATTTTGAGAAATTTGCACATAGTTTGAGAAATTATTAACACAATAAATTAAACATTTAGGGGATCCACCAATGGTGATTAAAACTCTCCTAATAATTTTTTACTTGGTGTCAAAACTAATATAGCTTCTTGTTCTATTTTTTCATTTGTTAAAACATCCATATTCCCAAATTCTTCTGTTAATGTGCCCTCTTGATTATATGTTATTATATATTGAAAATAATCATCTTTACTATTGGCTTCTGAAAGTTTTTTTTGTAAATACATGTACAGATGAACAAAATGAGCTTTATCAACTCCATCAAAAATTCCATCATGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCAGAGTAACTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 34977-35206 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIN01000017.1 Desulfonauticus submarinus strain DSM 15269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 34977 30 100.0 37 .............................. AATAGAGTTTAATAAAATATTATTTAAACTTAAAAAT 35044 30 100.0 36 .............................. AGTGTCGGATGATCCTTGCTTCGTTTGGAAAGCGGA 35110 30 100.0 37 .............................. TCAATTACTTTTTCAACAGGAATGTTTTTTGGAATAA 35177 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 CTTCTCAGAGTAACTACAAGGAATTGAAAC # Left flank : AAGAGGAGAATATGTCCCCCCTCCAGATCTAAGTAACTATGAATATTGTAAAAAAATAGATTTTTGGAATTATCCTGTTCCTCGTTTTCATCCGTTAATGTGTAATGGATATGGAAGATTTGTTCGTGATTTTTTTGACATTACTGCAAGTGTCTCTCAAGAAAAAAAAATAGTTATTATAAGAGCAAATAATTATATAAAAATACTAAAAAAATTTGAAAATGACTCAAATTGGATTGACATAACTCAAACAGTTTTAGACCAAATCAACAATTTTAATTTTAACATAGATTCATCATTTGGAGTAATTATTAATTAAAGCTTTATCGGTTTATAGGTATCAATAACACAATAAATCATATTCTTAACACTTTATAATACACAAAGTTGACTCCCTTTCTAATTTCCTTTAAATTTTTAAAAAAATTTTCTCAAATTATGTGAAAATTTTTCTTAAACTAAGTGCCAAATTACAATGGGCTTTGAGAAGGGCCTGGCTG # Right flank : TGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCAGAGTAACTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 113194-113951 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIN01000005.1 Desulfonauticus submarinus strain DSM 15269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 113194 30 96.7 36 ...........................G.. TAATTCTTATGAGTTGATAAACTATCTTTTAATAAA 113260 30 100.0 36 .............................. TATTCTCTAATAATAGGAACTAATTTTCCAAATACT 113326 30 100.0 36 .............................. CCAGCCCTAGCTGTTCCTTCAAACAATGCTTGCATT 113392 30 100.0 37 .............................. CAAATAAGGCTAATTATTTTAATAATTTAATTTAGAA 113459 30 100.0 36 .............................. TCCATCGTTTCATGATAGTCTGCACTTTTCTCCTTC 113525 30 100.0 36 .............................. CCTTTTGGGTCTACAAGAATAGGATTACCATTACCA 113591 30 100.0 36 .............................. CAATTTCCTTATCTTCTCCACTACAATTTCTATCTA 113657 30 100.0 36 .............................. TTTTGTATTGTTTAGATATGGAAGATTTGTAGATAG 113723 30 100.0 36 .............................. ACAGAAGAGCAACAAAAGAAGTTAGCAAGTCAACAA 113789 30 100.0 37 .............................. TAAGTAGTAGGATATGTAACTGTATCAGAAAATAAAA 113856 30 100.0 36 .............................. CAAATAAGGCTAATTATTTTAATAATTTAATTTAGA 113922 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.7 36 CTTCTCAGAGTAACTACAAGGAATTGAAAC # Left flank : TTTGGTAGGATTTGGAGAATTTTCAATGTATGTAATTATGGTTTATGACATAGAAGTAAATAGAGTTGGAAAAGTGTTAAAAATAGGAAGGAAATATTTAACATGGGTACAAAATTCAGTCTTGGAAGGGGAATTAACGAACTCACAATTTCAAAGCCTTTTGATAGAGTTAAAAGATATATTAGATGAAGAAAAGGACTCTGTTGTATTTTATCTTTTTAGGACGAAGGCTTACTTTAAGCGTCAAGTAGTAGGTATAGATAAAAATGAACCTTCTCAGTTTTTATAGCAGACAACTTATTAGATGCTTAAGGTATATAGTATTTGTTTTAAAGTCGTCGATATTGAGTAATGTAAAAAAGATAGGGGTACGACGACATTATATTTAAGGTATAACATATTGTATTTTTTATAGATTTTTTTTATTTTTTTTAAAAGTTGGTTCTGTTTGTTGACAAGTGAGGAGGGGTATGATTATTTTATTTTAATTATTTTTATGG # Right flank : TATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCAGAGTAACTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //