Array 1 628-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000072.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_c84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 627 26 89.7 32 ---.......................... GCGGAATACCACTATATAAAGCCCCTCAACCC 569 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 508 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 447 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 385 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 324 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 263 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 202 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 141 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCATAAATTACTCGATGCGTACCTGTGAAATCTGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 392-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000016.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_c16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 391 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 329 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 268 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 207 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 146 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 85 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GGCTGAAATATTGCTATTTCCGAAGGGGCTGATGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 964-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000074.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_c86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 963 29 96.6 32 .............C............... ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 902 29 96.6 32 .............C............... CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 841 29 96.6 32 .............C............... CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 780 29 96.6 32 .............C............... GTGATCCGCGCCTATGACGCAATGGTAACGAC 719 29 93.1 32 .............C..............T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 658 29 96.6 32 .............C............... CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 597 29 96.6 32 .............C............... GGCGTTTTATTCGACCTGAAAAAATGGATCGT 536 29 100.0 32 ............................. ACATCTCGCGGACAATAGCGATTTCCACCGTC 475 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 414 29 96.6 29 ............................C CTTGTTAAATACAGGCGGCGGCGGGGTTG 356 29 100.0 32 ............................. AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 295 29 100.0 32 ............................. CAGGATTGGATTAATGAAGACGGGTACGAAAT 234 29 100.0 32 ............................. AGATTGCAGAATTATATTTCACGCTGGCAGCA 173 29 100.0 32 ............................. CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 112 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATC # Right flank : GGTCTTATAAATTGGGCTGATAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 211-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000112.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_c171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 149 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 88 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000092.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_rep_c132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 61 29 100.0 11 ............................. CGGCCAGCCAT 101 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 162 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 223 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 27 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGAT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.56, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000103.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_rep_c148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... AGAATATTCAACTCCAGCGGGAAAAAGACGCA 60 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 121 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 182 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 243 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 304 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 366 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 427 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 488 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 549 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 610 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 671 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CCTCATCGGGAGCCAACGCCGCGAGAATACGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000107.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_rep_c160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 61 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 122 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 183 20 69.0 0 ....................--------- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRXC01000115.1 Salmonella enterica subsp. enterica serovar Infantis strain SI54/04 salmonella_si54_rep_c176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 112 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 173 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 234 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTCCCGCCTGAACAAAATCGACCACGTTATTAAG # Right flank : GAAACAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //