Array 1 8492-5840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCI01000014.1 Cronobacter sakazakii strain MOD1_AS-4 AS4A_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8491 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 8430 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 8369 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 8308 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 8247 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 8186 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 8125 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 8064 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 8003 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 7942 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 7881 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 7820 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 7759 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 7698 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 7637 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 7576 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 7515 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 7454 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 7393 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 7332 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 7271 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 7210 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 7149 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 7088 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 7027 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 6966 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 6905 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 6844 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 6783 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 6722 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 6661 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 6600 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 6539 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 6478 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 6417 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 6356 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 6295 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 6234 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 6173 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 6112 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 6051 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 5990 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 5929 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 5868 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 295-146 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCI01000002.1 Cronobacter sakazakii strain MOD1_AS-4 AS4A_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 294 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 234 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 173 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20428-21494 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCI01000007.1 Cronobacter sakazakii strain MOD1_AS-4 AS4A_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20428 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 20489 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 20550 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 20611 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 20672 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 20733 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 20794 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 20855 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 20916 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 20977 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 21038 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 21099 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 21160 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 21221 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 21282 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 21344 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 21405 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 21466 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //