Array 1 86681-89327 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHR01000002.1 Bifidobacterium pseudocatenulatum strain AM36-5BH AM36-5BH.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 86681 36 100.0 37 .................................... TCGACGAACTGGTGGCATAGGGCTTCAAACAAGTCAA 86754 36 100.0 34 .................................... AACCAGTTGACGTCCACCGCGCCGCTGATGCCGC 86824 36 100.0 37 .................................... ATCAGAGACGATGCGCGTCTTGCACCCTGCTGCGCAA 86897 36 100.0 38 .................................... TGGTTCGCGAGGCTTCCGACAAAGGAATCACCTTGCAC 86971 36 100.0 35 .................................... TATCGTTCGCAGGCGCATTACGACACGTATGGCCG 87042 36 100.0 36 .................................... TTGATGGTGGTGCCACTCATGGTGCCGGACGCGAAA 87114 36 100.0 39 .................................... CGAAATACCGCTGGAAGCAAGGTCAGTCAGCGGACTGAT 87189 36 100.0 37 .................................... TTTGCCATAGTACAGTCGGTAAACTCGATACCATCCA 87262 36 100.0 37 .................................... TTGCAAGCGCCGTCCGAAACTCCACTGCGCAATACCG 87335 36 100.0 39 .................................... AGGCTTGACATTGGCGCTCAGCAAGCGAATCAGCAACAA 87410 36 100.0 36 .................................... AAAAAAGGCGAAACCGTGACCGTCGAAGACTTCGAC 87482 36 100.0 35 .................................... TGATTGATCCGTAAGCTTTGCCGCATTTCTGGCAG 87553 36 100.0 35 .................................... TTTAAAATATGCGATATTCCTTGTGTGCGAGGGTA 87624 36 100.0 36 .................................... TAGACATTACTATTCCTTTCTTTTAGTCGAACAGAT 87696 36 100.0 35 .................................... GGCGACCAGTCGCACGACCATTCAGAGGCCGTCCG 87767 36 100.0 37 .................................... GTGGAATGCGCTCACTGCGGCGAGGTTGTCGGCACAT 87840 36 100.0 36 .................................... TAGACGGAACAGCCGTCCGTCTCCTGTTCGAAGATT 87912 36 100.0 37 .................................... CGGAAAAGTGTGGGCAAAATGTGGGCACGGCTCACCA 87985 36 100.0 37 .................................... TTCCAGGCGATGAAGCCGAACTTCTGGAACGTGCTGC 88058 36 97.2 37 ...............................A.... CTCGCAGACCTGCTGACCGGACGCCGCATCATCCCAC 88131 36 100.0 34 .................................... TGAACGCGGTGCTTTTCCGACTATTAGAGGGGGG 88201 36 100.0 37 .................................... CTAGATCTGCCCGAAGGACTGGATACGGGCAAATGCA 88274 36 100.0 36 .................................... CCGGAACAGCCGCAGCTCGACCCGACGCTGACCGAC 88346 36 100.0 38 .................................... GGCATCGATTTGACCATGTTTGACGTTTCTGGAGGTGT 88420 36 100.0 39 .................................... GCCGCGCTGATCGTACTCGCGTAAAATGTTGAGCAGTTG 88495 36 100.0 38 .................................... GACCAACGTGTGGCCGAGATCACCGGCACGACGGGCGA 88569 36 100.0 38 .................................... GGTCAGCCATCGGTCACCCCTGAAAATGTTTCGCGCGG 88643 36 100.0 35 .................................... CGGGACACTTTGACCGTGCTCGGGTATGTGCAGGA 88714 36 97.2 35 ........................A........... AATGCAATGAGCTGGGTTACCCCATGGCGAGACTC 88785 36 100.0 34 .................................... GAAGAGCATGGAGGGTTTAATCGTTCATGTTGAT 88855 36 100.0 35 .................................... ACACTGCGTTGCGGCATGGCTTGCTCCTTGTTCCA 88926 36 100.0 35 .................................... TTGGACTGGGCAAGTTGGTCCTCAATCTGTTTACG 88997 36 100.0 37 .................................... GAGGTAGCCAGAACGGCGACGGCGTGTTCGCCAACGC 89070 36 97.2 41 ..............T..................... AAGGACCGCACCTTCTTGTACCGCCTCGACTCGTCCGTGAT 89147 36 100.0 37 .................................... ATATCAGCATAAGGACACTCGCCACATGTCCAAGAAT 89220 36 100.0 36 .................................... GCGGAAATCACCGACCGAATCCACCAACTACAGGAA 89292 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ========================================= ================== 37 36 99.6 37 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGCGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCGAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTAAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAACCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : GTCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //