Array 1 176591-176380 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000014.1 Streptomyces fructofermentans strain JCM 4956 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176590 29 100.0 32 ............................. AAGTCGGCCTCCGCCGTGTACAAGCTGGACGT 176529 29 96.6 32 ............................T GGGGTCGAACCGAGTTCGCGTGGATAGCGGCT 176468 29 100.0 32 ............................. AGCTCGGACAGTCGGTCCGGCCGGGTGAACTG 176407 28 93.1 0 T...-........................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGGGGACCCTGGCCTACTTGATCTGTTCAGCGAACCATGTGGATGACAGATGTACGGACAGGACTGCGCCAGTCGGCACGCGCGAACCGGGCGTTGCATCTGCGTGCGCTCTTGGGCGCTCCTGTGAACTGCCGTGGCCGGGCTTGCGGTACGGGTCTGCCGGGGCCGTGGACAGCCTGTGGCCGAAAGCGGCGAAGACCATATCGAAGCCGACTGGACGGCAGCGGCAACGCGGCCCTGGTTCGGTTCCGCCCGCTGCCGGGCAGTGCCCGGGCCCGTCTCGGTCTGGCGCCAGAACCATACCTGCGGCTGCAGGGGGCAGCGACCTCGGTCGCAGGCGAGCGACTTTCCCCGGGTGCGAGGAGCAGCCCGCCCTGCGTCGTATTGCGCGCGTTGGGGGCTATCCCCGCAGGTGCGGGGAGCAGTACAAGCCCGAGGTCGACGTCCACGCGGTGCCGGAACCATCCCGCGTCGGAGTTGAAGGCCCAGGTCGGGCAGT # Right flank : TCGCGTGTGTGCCTTGGTGGCGTTTCGGTAGGGGTCCGTGGGAAGACGCCGTGGATGTGCGGCGGCACGAGGTCGTGTCGTGTCTGTTCAGGTGCACGGCGGGGTTGCTACAGGTCGGTCCAGGTGCGGGGTTCGCCGCCGGTGAGTGGCACCCATGGTGGTGTGGCGGGGTCGTGGTTTTCGATGTCTTCCAGCACGGCGGCTGCGAGTCGGACTTCGCGGGCGAGGGCTGCCACGAGCGGATGCTGGGCGACCATCGCCTGCAGATCCCGGATTCGGTGGTCCAACCTGGCCCGGGAAGCACCGGTGAGGACGAAGAGCACGCGGGGGAAGACCGGATACCAGCGGAGCCAGACCGGGCCCGTGGAGGCCGGCTTGCGGCGGCCGACGGGCTGGACCTCGTACTGGAACAGCCGCGCGTACCCGATCAACTTCACGGCCAGGCGCTCGCTGCTCATGGTGGTGCGGTCGACCTCCACGAAAGCCCGCAGCTTCCGCCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 197322-197473 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000014.1 Streptomyces fructofermentans strain JCM 4956 sequence14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 197322 29 100.0 33 ............................. CAGCGGCCGTCCCTCGCCGACGCGGCTCGGACC 197384 29 100.0 32 ............................. TGGGGCCCGGGTACGGCGGTCTTCTTGGCGGT 197445 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 ATGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTGCTCGTTCCCAGTCGCTCGCGCCCGCAGCAGCAGCACACAGAGCGTGCTCGATGAGGTCGTCGCCATGCCGGTGGAGGCGCTCGCAGTAGCTGCGAGTTGCGCCTGGATGGCTGAGAAGCCAGCGGCCCTTGGTGGCCTGCTCGGAGCCGAAGCCGGCAAGGATGCTCGAGGCACAGGCATGGTTGAGCATTTCGAGCACCCACGGCCGGATGCGTGCGGAACATCCTGGTGTGTTGATGTTTGTCCAGCCCTCGGGGCTGAGGAACACCTACCGGCAATCCAGCACCGAGCAGGCCAAGACCAGCGAACACACCAGGCACGCAGCCGATCCGAGCGCTTCACCCATCGACCCAATCCCTCTAAGGGTAGCGTGATCGATACACCGCCGAGCACCCACGGAACCCACGGAACCCACGCCAACTATGCCCCATTTGCCGGAATCGATGAAAGTGTGCGAAAACTCGCCTCGGGCGAACTAAACCCGCAGGTCGCACAGT # Right flank : CTTTCGGCCCGGTACGCGGACGGCTGTAAGAGGTCCTAACAGAAGCTGTTGATCATGTGACTTTCGGCTTTGGCGGTCGTTGGTCTGGTCGTGGGGAAACGTCAGTCGCGGCCGTGGATCGTGTCGGATGAACTGTGGTCGCTCATCGAGCCGTTGCTGCCCGAGCCAGGGCCGAAGCTGGTCGATGGCAGACCGCGGGTTCCGGACCGGCAAGCCCTGTGCGGGATCCTGTTCGTGCTGCACACCGGGATCCAGTGGGAGTACCTGCCCCAGGAGCTGGGCTTCGGCTCGGGCATGACCTGCTGGCGGCGCCTGGCTGCGTGGAACGAGGCTGGCGTGTGGGACGAACTGCACCTGGTGCTGCTGCAGAAGCTGCGGTCGAAGGACAAGCTGGACTGGTCGCGGGCGGTGATCGACTCCTCTCATGTCAGGGCGGCCCGACGCGGCCCAAAAGCGGACCCAGCCCGGTCGACCGTGCACGGCCGGGCAGCAAGCACCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 202297-201778 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000014.1 Streptomyces fructofermentans strain JCM 4956 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202296 29 100.0 32 ............................. AAGGCGGCCGCGGCCGCGGAGGACGACGAGGC 202235 29 100.0 32 ............................. GCGCTGCGCTTCCGGGTGACGGACGACGCGAT 202174 29 100.0 32 ............................. GACTCCTGCTCGAGGAGATCCCCGTCCGCCCG CGC [202162] 202110 29 100.0 32 ............................. GCGTGCCGGATGGTGGACGCCCTTCCCCAGCC 202049 29 100.0 32 ............................. TCGAGCCGGGCGAGAACGTCAGCGGCGTCGTC 201988 29 96.6 32 ................T............ CGGCGGGCGGCTGTGGCTGGGACCGGACTCAC 201927 29 93.1 29 .................A.........G. TCAAGAGTGGAGTCCCTCGGTTGGGAGTC C [201912] 201868 29 89.7 32 .....T..A......C............. GACAAGACGGTTAACGCCATCGGGTGCGTCGG T [201856] 201806 29 89.7 0 ........A...T.............T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCCGGGGGACCATCCCCGCGGGCGCGGGGAGCAGTTGGCTTCCTCGATCTGGTCGGCGGCGGTGCCGGGACCATCCCCGCGGGCGCGGGGAGCAGACTGCGCGACCTGCGGGTTTGTTTCGCCCTAGGCGAGTTTGCGCACACTTTCATCGATTCCGGCAAATGGGGCATAGGTGGCGCTTGGTTCTGTGGGTGCTCGGCGGTGTATCGATCACGCTACCCCTGGAGGGAGTGGGTCGATGGGTGAAGTGCTCAGCCGGCTCGAGCGTTCGCCAGCAATTCCCCCACCCGTCATGGAAAATGCCTACCGGTAAACCAGAACCCAGCAGGCTAAAACTAACGAACACGCCAGAGCGCATGGCTCGCTGGCTGGGCCTTCCGGGTGGAGCGGACGGTCGGGTGTCGGTGAAAGGCGATGGCTGTTCTATGTCCACATTGTCCATTTCTCTGAAAGTGCTCCGAGATTGGCCGTGCCGGAGTTAAAGGCGCAGGTCGCGCAGT # Right flank : TGAGCCGGTTCCGCGGGCCGCATGCGGACTATCCGGCGAACTCCCGCATCCATGCCTCGACCTCGTCGGCCGAGCGGGGGAGCGCGCGCGAGAGGTTCTCGTAGCCATCCGGCGTGACCAGCAGGTCGTCCTCGATCCGGATGCCGATGCCGCGCCACTCCTCGGGTACGGTCAGGTCGTCCGGCTGGAAGTAGAGGCCCGGCTCCACAGTGAGGACCATGCCCGGCTTCAGGACGCCGTCGACGTAGTCCTCGTTGCGGGCTTGGGCGCAGTCGTGGACATCGAGCCCGAGCATGTGCCCGGTGTCTGTCATGGTGAAGCGGCGCTGGAGACCGAGGTCGAGGGCGCGGTCCACCGGGCCCTCTATGAAGCCCCACTCCACCAGCCGCTCGGTCATCGACCACTGGGCTGCGTCATGGAAGTCGCGGTACAGTGAACCCGGCTTCACCGCCGCCATGCCTGCCTCCTGCGCCTCGTACACGGCGTCGTAGACCTTGCGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 202702-202975 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000014.1 Streptomyces fructofermentans strain JCM 4956 sequence14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202702 29 100.0 32 ............................. GGCACCGCCGCCGACCAGATCGAGGAAGCCAA 202763 29 100.0 32 ............................. CCGGCCGCCGACCTCGACATCGGCGACGCGCC 202824 29 96.6 32 ....................A........ ACCGCCGGCCCCATGAAGTCGAAGGTCTGGAA C [202839] 202886 29 100.0 32 ............................. TCCGGCCCCTGGAAGCTGGTCGAGGCGCTTGG 202947 29 82.8 0 ...........A...A...A.......TA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AGCGCGGGACCATCCCCGCGGGCGCGGGGAGCAGGCCTCGTCGTCCTCCGCGGCCGCGGCCGCCTTGGGACCATCCCCGCGGGCGCGGGGAGCAGACTGCGCGACCTGCGCCTTTAACTCCGGCACGGCCAATCTCGGAGCACTTTCAGAGAAATGGACAATGTGGACATAGAACAGCCATCGCCTTTCACCGACACCCGACCGTCCGCTCCACCCGGAAGGCCCAGCCAGCGAGCCATGCGCTCTGGCGTGTTCGTTAGTTTTAGCCTGCTGGGTTCTGGTTTACCGGTAGGCATTTTCCATGACGGGTGGGGGAATTGCTGGCGAACGCTCGAGCCGGCTGAGCACTTCACCCATCGACCCACTCCCTCCAGGGGTAGCGTGATCGATACACCGCCGAGCACCCACAGAACCAAGCGCCACCTATGCCCCATTTGCCGGAATCGATGAAAGTGTGCGCAAACTCGCCTAGGGCGAAACAAACCCGCAGGTCGCGCAGT # Right flank : ACCTCGGCACAGTCACCCTCGCAGCCCTCATGAACCCGCACATGATCCAAGAGACAGCGCCCAGAGCCGTAGGGGCCAGTTCAGGAAGCATCACAATCGTGTGGGTCCAATCGCCAGATCTCAGTAGGCTTCGCGCAATGTGCCGGGCCGTCTTCTGGTCGGGAGGATCACCCTCGCCGGACGCATGCGCGAGCGCCAGACAAGTCCTGACGACCCTGTCGTCGGCTCGCCAGTTCGTGGACAGGGCCACCGAGGCTCCGGCGAGGTGCGTGGCGGCTGCGCTGAGCGCCGCTGCCCGCCCGTCTGAGGTCCGTGCCGTCTCGGCATGGTGCCGGAGGGCTGCGCTGTCGCCCGTCACAGCAGACATCAGTGCGAGTTCTGTACAGGCTGGTTGCCCCGGTTGAAGCGAGCGCTGCCATCTGCTCTTCATGCCCGCGACGAGGGGGTGGTCCTCTTCCGGGATGTGCCCGAGGTGTTCCAGCAAGGCAATGACGGTCACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2332-3274 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000042.1 Streptomyces fructofermentans strain JCM 4956 sequence42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2332 29 96.6 32 ............................G AGCTTCCAGGTGGTGGCCGAGGTGTAGGAGAC 2393 29 100.0 32 ............................. GCCCGGCTCCAGCAGCGCCTTTCGAAGATGAA 2454 29 96.6 32 .......................A..... GGCGCCGGCCTCTCCCGGCCGCCCTTGCCGAG TG [2470] 2517 29 100.0 32 ............................. GGGGCGCAGCTCGGCTCACGGCAGGCCCTCGC 2578 29 100.0 32 ............................. GGCGCAGGTGCCAGACCGAGTGCGCGGCGCTG 2639 29 100.0 32 ............................. AATGGTCGATTTTGTGCGGTGGTCGAACCGGT 2700 29 100.0 32 ............................. CGCTCGAACTCGTCGACGGTCAGCAGCGCCAC 2761 29 100.0 32 ............................. AAGGCCTACCTGAGCGCGTACACCGTCATCGC 2822 29 100.0 32 ............................. CAGTCGATGATCGCGTTGACCAGATCTGGGAT 2883 29 100.0 32 ............................. TTGGCGGCCGCCTCGGCGAGGGTGAGCGACGT 2944 29 100.0 32 ............................. GTCGGTGCCTTCGCCGAATTCCTCCTGAAACT 3005 29 100.0 32 ............................. GCTCGATCGCACACAGCACGGCGTGGCTGAAC 3066 29 93.1 32 .........................C..T GACCGTGGACCCAACCCGGATCGAAGACCTCG 3127 29 100.0 32 ............................. CTCACTGACACGGACTCGCGGCTCCATCTCCG 3188 28 93.1 31 ...........-...........A..... GGCCGCTTCCGCCGCGTCATGGCTACCGCCC 3247 28 93.1 0 ........T............-....... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCGCCGACGGCCCCACCGGCGAGAACACATACCACTGCGTGTTCTCGGCTGCCCTGACCGCCGCCCCCAGCAGCGGCACCCGACTGGAACTCGGTCCGAGCACCCTCACCTCCGGCACCCCGGCGGCCTCCTGCTCCCCGGGAACTGCCTCAACTCTCACCCTCAAAGACGACGGCACCCTGCACCGCTCCCTCGGAGGGCAAACGGTCGCCTACACCCGCACCCCGTAACGACCGCCACCGCCGCCTGCAGGTATGGCACGCTCCTGCGCCCAGAACACCGGCACCAGACAGAGCCATGCGCTCCCCCATCGGAGGACACATACCAACCCTGCGACCAATCCCAGCACTTCACACACCGACGCGATCACACCCGCAGTAGGGTGGCCGATTGACCGCCGAGCACTCGCGCAACACATACCAACTATGCCCGATTTGCCGGAATCAGCAAAAGTGTGTGAAAACGCGCCCCGGGCGAGGTAGACCCGCAGGTCGCGCAGT # Right flank : CGCCCTGCTGTCCCCGATGGGCGGGTAAAGGGCAGCCGCCTACGCGGCAAAAGGCTCCGTGAGGACCGCGACGCCTTGCCCAACGACCCGTCGCCTGTGCCGAACATTCAGACGACGGCCTATGTACGCTCATATACTCATGCGCGTCTTGTGCCGCAGCCGCTACCGTCCTTGCCCACGGAGCCACCGGAGGGGGAACGGGATGGCGGACCTGGCCACCTTTCAGATGAATCGGGCGCCCGCTCGCGCGGCACTCCAGGAGGACCATTTCCTGAAACTCGAGGCGGGCGGGCCCTTCGTCGAAGCGCTGCGGGCCCTCTTGGCGCCGCGGCCACCGGAACCGTCGCAGGAAAGCGAGGTTCAGGACGACGGGTTCACCGAGGCGTCAGGGACGGAGCCGTCGGGCACCGCTGTCGAAGGCGGCGAAGCAGCGGCATCGGGGCTGCAGGTCGCCGAGGCGGCCCAGGCGGCTGCCCGGCGCCATCTGGCCACACTGCCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10932-9806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000042.1 Streptomyces fructofermentans strain JCM 4956 sequence42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10931 29 100.0 32 ............................. TCACGGACGGCCGCGTAGACGGCGACGATGGT 10870 29 100.0 32 ............................. TGACGGGCCCTCTGCGGTCGTGTCAGCGGGAT 10809 29 100.0 32 ............................. TCGGCCGCGACTGCCTTCCAGGCCGACGGGCC 10748 29 100.0 32 ............................. GAAATCGCCAAGATCCTCGGGCGCGGCGGCCG 10687 29 100.0 33 ............................. TGCACCGTATTCAGAGCCGGGGGCGCCTGGCTC 10625 29 100.0 32 ............................. GGCCAGTCGCTCGGTGCGATCGGTGCGGTGAC 10564 29 100.0 32 ............................. TTCGACCTGGGATTCGGGGTGTGATGTGCCAC 10503 29 100.0 32 ............................. CCGGTGGGCCTGGACGACAGCTACGGTCTGTG 10442 29 100.0 32 ............................. TCCTTGGTCTTCTTCAGCGCCTGCTGGAGACC 10381 29 100.0 32 ............................. AGCGCGCAGGTCAGGACCGACCTGGGTGACGG 10320 29 100.0 32 ............................. TCTGCCTGAATCCCGGGTCCATGGGGTTCCGT 10259 29 100.0 32 ............................. ACCACACACGCGAGTGGGGTTGCCCGGTGGCC 10198 29 100.0 30 ............................. CCTGTCCGCCATCCGTCCAAACAGCAGTGC 10139 29 100.0 32 ............................. CGGGCGACCTGCCCCAGCTCGCCCGTCCCCCA 10078 29 100.0 32 ............................. CGGGCCCGCCGACCTGGCCTGAAGCGGCGAAC 10017 29 100.0 32 ............................. CGGTCCGGGAGGTCCGGCCACATGGCGTTCGT 9956 29 96.6 32 ............................G GCGACGCCCGGCAGGGCGGCCTTCTCGCTGCA 9895 29 100.0 32 ............................. TGGGCCGAGCTGAGGGATCTCGTCGACGCCCT 9834 29 93.1 0 ...........................AG | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CATCGAAGGACAGCAGCCACGACTCGGTGAACCACCCAACTTCCTCCGCATCGAGAAGATCAGCCGCAACCGCATCACGGCCACAGAGACGTTCTACAGCCCCGAGGACGCCAACTGCTGCCCCTCAGGAGCAGCCGACAACACCTGGAGCTACCGCGATGGGAAGTTCGTCCCGGTCAGCAGCAAAGTCCGCCCCACCCCATAGACGACGCCGCGATCCACTGCTGTCGCCATGGAATCGAGCGAGACCGGAACGACACTCCTGCGGCACTGCAGGCTCCCAGCAGATACTGAGACGTCTGGCACGCCGACTCTTGCGTCGATGCCAGGGGCCGCGAGCTCAACCCGAAGCTCCCGGTCCGCCGACCACTGGTCACGAACTCCCGCCCGTACTTCCGCCGTTGCCCTCGACGTCGACAGAATTGATGCCCGAAATGCCGGATTGTGTGAAAGTGCTCCAAAATCCAGTGAGGCGGCCCTAAAGCCCCAGGTCGGGCAGT # Right flank : CGTGGGCGGCGCGGGTGGAAAGCCCTTTGGTGCCGTCCGGCCAGGAGTGCGGGTCGCTACGGGGACGAAGGCTGCTCGGAGCCGTTCGGTATGCCTTCTACATGCAGATGCGGATTTTGTGAGGGCCTACCAGTACGCAAGGCAGGGGCCTCCAGTGCGGTCCTGACGCCGGGGGGAGCAGTCGGTCAGCTATCCGTAGGCGCGCAGCGTCGCCTCCGGCTCGCGCAGGGTGCCTCCCAGGAGCAGGCGCAGACAGACTTCCAGGCCGCGCGGGCCCTGACGTAGCGGCGGCTCGCCGTTCACCACCACAGGGCCCGGGAACCTCCGCCGTGCGTCGGGCCGGCCGTACCCCCGCGGGTGCGGGGAGCAGCCAGAGCGCCATCAGGCGGCGACCAGCGTCGCGGGTCCATCCCCCCGGGTGCGGGGAGCAGGAGTCGTCCACGTTGATGCACAGCAGAGCCCAGGGAAACCATCCCTGCGAGGATGGTCCCATCCAGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 17043-17560 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000042.1 Streptomyces fructofermentans strain JCM 4956 sequence42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17043 29 100.0 32 ............................. ACAATGCGTGCGCTGACCGTAGTACGTGTGGT 17104 29 100.0 32 ............................. GCGATTCCCTCGTACGTGCCCGTGCTCTCCGG 17165 29 100.0 32 ............................. GGCAGATGCCACTCGATGTTCGTCTGCACGTG 17226 29 100.0 32 ............................. ATGGGGTCGGTGACCAGCTCGTCGTTGCGGAG 17287 29 100.0 32 ............................. TTGGCGTCCTCCTCGAACGCCAGGGCCTGCGG 17348 29 100.0 32 ............................. GCCATCAGGCCCCGCCTCCCTGCCGCATGACG 17409 29 100.0 32 ............................. TTCCCCAACGGCGCACGGTACTTGTCGGGGTC 17470 29 96.6 32 .............A............... CGGCTCGCGCGGGCGAGCCGGGCGTCGAGGTC 17531 28 89.7 0 ......................C..-..A | GT [17552] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCGGGAGGCAACGGCCCATGCGGAGGCACGCGATGAAGTACGTGGAATTCCTGGGACCCATGGCCCAGTTCGTCTTGGGCTACGGACTCGGACGGGCGCACCAGTGGTCGCGGCACTGGCGGACCACTCCGCTCAAGCGGCGCCTGGAGAGGGCCGCGGCCGCATTCCGCAAGCCCGGATAGCGCTCGCCTGGAGAGGACGACAAGGGAGGGCTGCTGGGCTACAGCAGCCCTCCGCTCGCCATCACTCGAGCAGTATCTGAAGTGGCTGGCCCAAGAGAAGGCCGCGCTCGGTGCCGCATCGGGAGAACACGGCCTGAGTCGAGGACAGGCGGATAAAGAACAGCCAGTTGACACGCCACCTCGTCCCTCCGCAGGTAATGTGATCGATTCCTTGCAGAGCACCATGGAACCCCATGCCACCTATGACTGAATTGCCAGAATCGACGAAAGTGTGTGAAAACCCGCCTCGGGCCGGGTAACCCGCAGGTCACGCAGC # Right flank : AGCCCCACGTACGGCGGAGGTCCCCGGGCCCTGTGGTGGTGAACAGCGAGCCGCGGCTACGTCCGGGCCCGCGCCGCCTGGAAGTCTGTCTGCGCCTGCCCCTGGAGGCACCCTGCGCGAGCCTGAGGCGACGCTGCGCGCCTACGGATAGCTGACCGACTGCTCCCCCCGGCGTCAGGACCGCGCTGGAGGCCCCTGCTTTGCGTACTGGCGGGCCCTCGCAGAATCCGCATCTGCATGTAGAAGGCATACCGAACGGCTCCGAGCAGCCTTCGCCCCCGCAGCGACCCGCACTCCTGGCCGGACGGCACCGAAGGGCTTTCCACCCGCGCCGCCTACGCTGAAGCTGGATTGCCGGTCCATCGGTCCACCCGCACGAGGCCCTTCATCGCCTGCGCACCATCTCCATTGGCTACCGAAAGGCGGCGGCTGACCTTTTGCGCCCAGCTTTGATTATTTTTCGAGGAATTCGCCCTCCCGACAGGGTCTGCCCGTAAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15556-15161 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000040.1 Streptomyces fructofermentans strain JCM 4956 sequence40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15555 29 100.0 32 ............................. ACCGAGCGCCGCCGCGTGCTGGGGCGGGCCGC 15494 29 100.0 32 ............................. TCGTCAAGCAGCAGCGGGCGGCCCGCCGGTGA 15433 29 100.0 32 ............................. GACGTCGCCTCGTTCCGCACCGGCTACGGCAC 15372 29 100.0 32 ............................. GGCGACCCCAGGGCGCTCACGGGCGGACGCTG 15311 29 100.0 32 ............................. TCGACGGTCAGGATGTCCGCGCCGGTCTGGCA 15250 29 100.0 32 ............................. CACCCCGGGACGGCGGCACAGCCGTTTCTCCG 15189 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACAGCGACCACGACCTGACGGTCTTCCTGAATCACGCGGGCATCCAGGATCCCGACAATCCTGGACGACCGCGGCTGGATCGGGTGGCGCGGCCGCCGCGCCCACCAGTGGAACGCCACCCGAGCAGAAGCGTCCGCTCGACAGACGCCGACGGCGGGAACAACCGGAAAGCACAGCCTGCAAGCTGGCCGATTCTGAAGTGATGCAGGAACCGGTTGGCGGATCAAGGCGACGCCCTGACGATCGAGCGTCCGTCAGCAACTCCCCACCTGTCATGGAAGATTCCTACCGGCAAACCAGCACTCAGCAGGCCAAAACAAGCGAACACGCCAAGCCGCAGCCGATCTGAGCGCTTCACTCGCAATCCCTCCAGGGGTAGCGTGATCCCCACATCACCGAGCACCCCCACGGAACCTGCGCCTTCTATGTCCTATTTGCCGGAGTCGATGAAAGTGTGCAAAACCTCGCCTCAGGCGAAGTAAGCCCGCAGGTCGCACAGT # Right flank : TCGCGTGTGTGCCTTGGTGGCGTTTCGGTAGGGGTCCGTGGGAAGAGGCCGTGGATGTGCGGCGGCACGAGGTCGTGTCGTGTCTGTTCAGGTGCACGGCGGGGTTGCTACAGGTCTGCCCATGTGCGGGGTTCGCCGCCGGTGAGTGGCACCCATGGTGGTGTGGCGGGGTCGTGGTTTTCGATGTCTTCCAGTACGGCGGCTGCGAGTCGGACTTCGCGGGCGAGGGCTGCCACGAGCGGATGTTGGGCGACCATCGCCTGCAGGTCCCGGATTCGGTGGTCGAGTCTGGCTCGGGTGGCGCCGGTGAGGACGAAGAGCACGCGGGGGAAGACCGGATACCAGCGGAGCCAGACCGGGCCGGTGGATGCGGGCTTGCGGCGGCCGACGGGTTGGGCCTCGTAGTGGAACAGTCGGGCGTACTCGATCAGCTTCACGGCGAGGCGTTCGCTGCTCATGGTGGTGCGGTCGACTTCGATGAACGCTCGGAGTTTTCGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35849-34026 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000040.1 Streptomyces fructofermentans strain JCM 4956 sequence40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35848 29 100.0 32 ............................. CCGCGCCGCAATGTCTCCCGGGACACCCTCGA 35787 29 100.0 32 ............................. CACGGCAGGTGGGTGGCCGACTGCCCGTGCAA 35726 29 100.0 32 ............................. CGGCGCTGACCGTGTAGGTCTGCTTGTCCCAG 35665 29 100.0 32 ............................. AGTTACCTTCGCGGGCTGGGGGTGTACGGGGC 35604 29 100.0 32 ............................. CCGCCGCCCCTCCGACCGTGCTGCCTGCTCAG 35543 29 100.0 32 ............................. CCGGACCCCTCGCAAGAGGTGTTCACCGTCGC 35482 29 100.0 33 ............................. CAAGGCGTACCTGAGCGCGTACCTGGTGGCCGA 35420 29 100.0 32 ............................. GTGGTGCGGTGGTCGCAGCACGGGCATGCGTG 35359 29 100.0 32 ............................. ATGTGAACGAATCCTCTTCTGGGTCGCGACTC 35298 29 100.0 32 ............................. GTCCGCAACGGTATTTCGGTCGCAGGTCGGCA 35237 29 100.0 32 ............................. GCCAGCGATTCGGGGGCGACCTCGGCGGCGGC 35176 29 100.0 32 ............................. CTGTCCGGCGGCCTGGTAATCGACTCCGTGTC 35115 29 100.0 32 ............................. AAGGATTTCGGCCTGAAGCCGGGCGCGGAATC 35054 29 100.0 32 ............................. TGGACCGTATTCAGAGCCGGGGGCGCCTGGCT 34993 29 93.1 32 .................AA.......... GGTCCGCTTCTGATGAAGAGGGCCGCCGAACG 34932 29 100.0 32 ............................. CAGCGCCAGGAGCTCAGCCCGGGCCCGCTTCT 34871 29 100.0 32 ............................. CAGCGCCAGGAGCTCAGCCCGGGCCCGCTTCT 34810 29 100.0 32 ............................. GGGGGGCCCGAGTTGATCGGCTCCAGGTTGTA 34749 29 100.0 32 ............................. CCACCCGGCCGAGGCTGGACTTGAGGCGCCCC 34688 29 100.0 1 ............................. G Deletion [34659] 34658 29 79.3 32 GC..CGT..T................... TGGGCCGGCGTGAGGGACTTGCCGAGGACCTC 34597 29 100.0 32 ............................. TCTGCGCATCGTGGGGTCTGTGCATCGAGGCG 34536 29 96.6 26 .....T....................... GTGATCTCCGAGCCCCGCCCCGAGCC 34481 29 100.0 32 ............................. GAGACCCGCACCAGCGACGACCTGCGGAGCGA 34420 29 96.6 32 .....T....................... ATCATGACGGTCTACGACACCGGCGACTCGTC 34359 29 93.1 32 ..............T..........C... GGCCAGTAGGCGTAGGGGTTCCCGGAGGGGAT 34298 29 96.6 32 .........................C... AGCAGGCTGGGTCGAGCAGGACAGCAGCCATT 34237 29 96.6 32 .........................C... GACGTGTTCGAGCGGGTCGGCGGCACCGTCAC 34176 29 96.6 32 .........................C... GGGCACGAGCCCGTCAACGCACCCGCGACCGG 34115 29 100.0 32 ............................. AGCATGGAACGTCCGCTCTACGACGAGTGGAA 34054 29 93.1 0 .....T............A.......... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.1 31 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGAGGTCCCCTCCGGATACAACCATGGCGAGACCGACGACTACGGCCCGGTGAACTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCAGGCTTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCCGCTGGCGTCTTCGTCGGCAACCCCTCAGCCCGGATTCGCGACGTGCTGTGGAACGAAGTCCAGCAGTACGCCGGTCAGGGCCGCGCTTTGCTCGCCCACACCACGAACAACGAACAAGGCTTCACCTTCCGTACTCACGACCACGCATGGCAGCCCATCGACCACGAAGGCATCACCCTGATCCACCGTCCAGCCGCCACGCCACCCCGGGAAACGAGCAGCCCGTCAGCTGAACCATCCGGATGGAGCAGGGCCGCCAAACGCCGACGATTCGGCAGAGGAAAATAGCCTGTATGTCTAAATTGTCTATTTCTTTGAAAGTGCTCCGAAACTGGTCGTGGCGGAGCTAAAGGCCCAGGTCGCGCAGT # Right flank : CAGCTCCAGATGACGGTGTCACCGTGACCGCCACGGCGAAGTGCAGATCATTGGAACCTTCTGAACGCCAGTCTGTGGCGAGCCTGTAGCAGCAGCCGCCCCTCGGGGTCGTTTTTGTGGCCGGTGAGGCCGTTGGTTTCCGGCACGTTGCTGTTGCATCTTCTCGGCGCAAGATCGGCAATCAGCGTTCTGTTGTCGCTGCGTTGCCCAACCGGCGCGTGAGCGCAGCCGATGTCCTTGCATGTCGTTTTGGCTATTCGTTCTGGTGTAGGGATGCAAGCTGTCCCGATTCCACGGCCCATTCACGATCGAGGATCGCGTGCACAACAGAGTCACGCCATAGGCCTGCCTTGAAGACGTGCTCGCGGATGGTGCCCTCTTCGATCATTCCTGCGGCTGTCATGGTTTTGGCTGATGCTCTGTTAAGCGGAGAGCGTGCTCCCCATACTCGGTGCAAGCCCAGCTCCTCAAAGCCGAGCGCGAGTAGAAGTCGCACGGAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 45491-46374 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000040.1 Streptomyces fructofermentans strain JCM 4956 sequence40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45491 29 100.0 32 ............................. TGGACACCGACGGCTACACCGCCGGCATGTAC 45552 29 100.0 32 ............................. TGGATGCGGAGTTCGCGCAGGTCGTTTGCGGT 45613 29 100.0 32 ............................. TCCTCGGCCAGCGACCGCGCTTCGTCGAGCTG 45674 29 100.0 32 ............................. TCGGTGTCGCCCACCCCGAACGGGGTCGGCAG 45735 29 100.0 32 ............................. GACGTTGTGATCCGCGGGGAGCTGGAGTCCGT 45796 29 100.0 33 ............................. CGTCGGTGTCCAGCTCGTAGGTATCGAGCCGCT 45858 29 100.0 32 ............................. AGGTCGCTCATGGAGTTCACGAAGACCTTGCG 45919 29 100.0 32 ............................. GTGCGCACGGACTTGGTGATCTGCGTCCGGAA 45980 29 100.0 32 ............................. CGTCCGGAGGACACGGGCGACCGGCTCGTCGT 46041 29 100.0 32 ............................. AGCTTGTCGATCATCGCTGTAGGGATCTTGCG 46102 29 100.0 32 ............................. CAGAACGCGCGCCGGTCCGGGACGGGAGAGGC 46163 29 93.1 32 .......................A....T CCGAAGAGGTTGCCGGTCGTGCGGATCGGCTG 46224 29 100.0 32 ............................. TTCACGCGACCTCACCCGCCTTGACGCTGGCG 46285 29 100.0 32 ............................. TTGGCGTGGATCATCGCCCACCCGGCGCAGGC 46346 29 96.6 0 ..A.......................... | Deletion [46397] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCTTGCCGATGTCGTGCACGCCTGCAAGCCAGACCGCCAACGCCCGACCGTCAGCGGCGCCACCCGGCAGGCTCGCGGCAACTACCCTCCGTACGGAGGCCGGTAGCCACTCGTCCCACAGGAATCCCGCAACGGCGGCACCGTCCTCCATATGCCGCCACAACGGCATCCAGCCATCGCTGTCCCGGTCATGCTTCGCCCACACCGATCGCGCCACCGGCCCAAGCCGTGACAGCAAGCCGCCACCGGCAACTCCCCCACCCGTCATGGGAAAACACCTACAGGCAAACCAGCACCCAGCAGGCCAAAACCAGCGAACATGCCACCCCGGCAACCGATCCCTGCGCTTCACGCACCGACGCGATCACTCCAGCGATAGGGTGGTCGATTCACCACCGAACACCCCACGGAACCCATACCGACTATGACCGATTTGCCGGAATCAATGAAAGTGTGTGAGAACCCGCCTCGGGCGGAGTAAACCCGCAGGTCGCGCAGT # Right flank : CGCATGGAGCGTGAACGTTTCATCTGCTGCCCGCACCCACCGAATCGGCTACCTCGACCAAGCGGGCGCGCACTCAAGGCATCCCGGCTCTGCCGGAGTCCCCGAAAGATCATCCTGGGTAGACCGGCACCCAACTGGGGTCTACAGGACCTGCCCACCGATATCTACTCGTCCGAGCGGTCCTCAACTGCTGGCGCCGAAATGCGGGGTTAGGGACAGAGTCTTCGGCAAACACTCAGCATCATGATGATCGAGTCCGTAGGATTTGGGCGGAATCACTTGAATCTTCCTGCATAGGCTGAGATCACCGTGAACGCTGCGACACTGCTGCTGCTTGGCGCCGCGGGCGGAGCGGTACGCGGAATCGTGCACGCCTACGACTGCATGACCGAATGGCTGAACGGGCGTCAGCAGTACCGGCTCGATCCCGACTCCGCTGCTGAAGGGCCACCCGCGTTCCGCGCGTTCTACGACATCGGGGGCGAGTCCATCGCCGCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 51559-50798 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000040.1 Streptomyces fructofermentans strain JCM 4956 sequence40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51558 29 100.0 32 ............................. CATCTCAACGTCCCCGCGTATCTGGACCGTCA 51497 29 100.0 32 ............................. GGCGTGGCGACGGTCGCGGACGACGAGGAGCT 51436 29 100.0 32 ............................. ACCACCAAGGCCCAGCATGAGGCCAACAAGAA 51375 29 100.0 32 ............................. TGCACGAGTTCCTTCATCTCGCCGCGGGTGGT 51314 29 100.0 32 ............................. GGGGGGCTCCGCCAATTGAGCTACGGCCACCA 51253 29 100.0 32 ............................. CGACCACAGGTCCAACCTGAACCCCCACCGCA 51192 29 100.0 32 ............................. TCCCAGTGTCACATCCGGGTCAGCCCTTGCGG 51131 29 100.0 32 ............................. GCCCCGGGCCGGGACCACCCAGGGCGGCATTC 51070 29 100.0 32 ............................. TCCACCTGCCACTCGGCGCCCGGGGTGTGCGC 51009 29 100.0 32 ............................. GCCATCGAGCGGGACATCCGCTCCGGCCGGCT 50948 29 96.6 32 ............................T TCCCCCCGGTCACCTCACGGAGCGCCTGGAGC 50887 29 96.6 32 ...............A............. CAGGCGTCAGCTCCGGGCCAGCCCTTGCCGAA 50826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 CTGCTCCCCGCACCCGTGGGGATGGCCCC # Left flank : CCGTCCATTGCTCGGAGAAACCCTGGAGAACTGGCTGTACCCCCTGGCAGCCATGTCCGCGCACACGCTCACTCGTCTAAGACAGCCCACCTCGCGGGACTTGCTCAACATCGATCTCGTCCATCTCACAGACGACCTCATGTCCCGCATGACGGGCACCCTGGACCAGAACTTCAAGAGCGCTCTGCGGCAGAGCAAAGCCGGCGGCGTCGACCGCATCGCACGCACACCCCAATTCACCGCCAAACTCCGACAGGCCGTCATCTCCCAGAGCCGATACCACATCGAGCGCTGACGGCGAAAATTGCCGCGGGTGAATGTCGGGGCGAGGCGGCGCGTTCAACCCGAAGCTCCTGGTCTGCCGACCACTGGTCACGGACTCCAGGGCCATACTCCTGCTGTATTATTCGGCGTCGACGGAATCGATGTCTGAAATGCCGGATTTCGTGAAAGTGCTTCAAAATCCAGTGAGGCGGCCCTAAAGCCCCAGGTCGGGCAGA # Right flank : AGCTCCTCTGTTGGGGAGCTCGCTGCGGGAAATCCAGACGGACAGGCACCTTTTGCCCCGTTGGTCGCATTCGGAACCCCTTGGCTGTCGCTCTCGGCTACCGTCGGAGAAGGTGCCGCGCCAACAGCCGGGGGGATCACATGGCCGGACTGCGATTCACAACACGGAAGTCGGTGACGGCCGTGAACGACAGGCCGGATCCTGCCCCTTCGACATCTGGGCGGACGCCGTCGCCGGCCGCATCTCCTCGCAGCCCGTCAACGACGGCGCCCGCTCCACGTGATCCCATGAAGGAGACGGCCCCGCGGGCTCCGTCGACGCCGTCGCCTGCTACTCGGCAACACACCAGCGTGGAAACGGTCTCGCGGAGTTCGACGTCAATGCCCCTCCGAGGAAGGGCGGTTGAGTCCTCGCCAAGGGATCAGGCTGCCGCCTTGCGGAATTCGACACCGCCGCCCGCTCGGGGGCAGCAGGCACAAGCTCGGCCGCTGCCGGACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGTGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2698-4123 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWD01000062.1 Streptomyces fructofermentans strain JCM 4956 sequence62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2698 29 100.0 32 ............................. TACAGCGAGCTGCGGGACCGGTACGTCCGGGA 2759 29 100.0 31 ............................. TGCTCGGGGCGACCTGGTTCTCCGGGTCCAT 2819 29 100.0 32 ............................. GTGCTGACGGGCGGCAGCGGGCAGGCGACCGT 2880 29 100.0 32 ............................. AGGATCAGTCCCCGGGCAGTGCCGCCGACATG 2941 29 100.0 32 ............................. GCCTCCAGGACGTCGCCGAACGCGAGCTGGAG 3002 29 100.0 32 ............................. GTGGACGCTCACCCAGGTGTCCGTGGAAATGC 3063 29 100.0 32 ............................. ACGTCCGCGACCGTGGTCGCGGACGCGTCCGG 3124 29 100.0 32 ............................. GGAATCGGCGCGCACGGCCGTTACCAGGTGAT 3185 29 96.6 32 ............................T TCGGCGATCAGCCATTTCCGGTAGGCGCCCGT 3246 29 100.0 32 ............................. GCGGTCGCGGCGCCGTTGCCGGCGGTCGTGGC 3307 29 100.0 29 ............................. TCCTGCTCCGCCTTCAAGCCGGCGGCGGC 3365 29 100.0 32 ............................. TCGGTCATGCACATCGACCAGGTCGCACTCTG 3426 29 100.0 32 ............................. GCTTCCGCAGTGCGCAATGCGCATGCACCGCT 3487 29 100.0 32 ............................. CTCACGCAACAGGACGTGTGCAGCCGGTCCGG 3548 29 100.0 32 ............................. CCTTTGGGTTACGAAGTAACCCTCTGTAGTTT 3609 29 100.0 32 ............................. ATGTCCGGCCGCCTGGACGTGGTGGGTGCGCT 3670 29 100.0 32 ............................. TCGGCAGCGTCTACGCCCTGGCGAAACAGCTG 3731 29 100.0 32 ............................. GACAGCGGGTCCGGGTGCCCGAGGTCGGCGAG 3792 29 100.0 32 ............................. GGCCTCGGCCTGCATGCGGTTTCGTACGGACC 3853 29 100.0 32 ............................. GCCACCCCCGGCCGGTCCTGGCAAACCGTCCA 3914 29 100.0 32 ............................. GCCGCTCAGGCGAGGGTCGAAGCGGCCCGCGA 3975 29 100.0 33 ............................. AGCTGACCGCCTGGAGTTACGGCCCGCCGTTAC 4037 29 82.8 30 ........T..G.G...A......A.... GCCAGGTCAAAGCCCACGTGGTCGCGTTCC 4096 28 82.8 0 ......T.......T......-..A.G.. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CAACAGCCCGATTCCCCACCCCAGAGCCAACCACCCCACAGCGCGACCATAGCCCCCATCCGACCGCGGTTCGAGGTGCGGCAGTCCCCGCAAGCCGCACCACACCTCCCATGACCGGAGGGCACGATGTCTGACTCTGGACTTCGAGCCGATGGCGGCACAAACGTGGGGACAAAGAAGTGTCGCGGCAGTGATGTTGAAGGACAAACCTGAAGAAGTGGACGGTAGCGCAGGCACGAGGTGGCCGCCGCCCCAGACCCAGGCCGCCGACGGAAGCGGCCAAACATCGCAAGAACCAGGGCCCCCGTTCCAGCCCCTGCCGATCAAACGCCCAGACAGAAAACAGTCAGTTAGCGCACCACCGCGATCCCTTCGCCAATAGAATGACCGATTCATCGCGGAGCTCATGGAACCCTATGCCACCTATGGTCGAATTGCCGGAATTGGCGAAAGTGTGTGAAAACCTGCCTCGGGCCGGGTAAACCCGCAGGTCGCGCAGT # Right flank : CGTGCCAGACCCCGATCGGGCAGGAAAGCAAGGCAGATCTCTGCTTCGTGGAAGGCAGCCGGTTCGACCAAACCCAGCTGGCCAAGGTGTAACAGTCGGCACTGACAGGCCCCCCAAATGATCACCAGCCGGGCTGCGGCACGACCCCAAACCCGCCAAGCGCCCGCACACGACACCCTCAGACGTCCGCACTCCTCCGGAACAGACCAGCTCATCTACGCCAGTCCGTCGCTGGAACCAACGGCCGTCCATCTGCAGTGCTGTGGCACATCCGCGAGCTGTCCCTGTGCCCCAGCTGCCTCCACCCGCTTCCTGTGCCCCGAATGAAAATGGCCGAGATCCCGCCCATTCGTCTCAGCGGATCAGCCCGCCTCAGGCCGGTGCCCGGAGCGGGGTGCTGGCAGCGCCGGGCAGGGGGATGGCCGGGCTCCGCGTTGGGCGACCCGGTCGTCCCTCTGGCGTTCCTTCGACCAGCAGCTTTTCGTCGTCTCCTACGCGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //