Array 1 19267-16184 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOK01000022.1 Photobacterium angustum strain ATCC 33975 CFSAN065437_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19266 29 100.0 32 ............................. TGGGGGAGTTAACAGGGTCGGTCAATTCTATC 19205 29 100.0 32 ............................. TCGGGTACCACACTATCAAATGATGGCAATTT 19144 29 100.0 32 ............................. TGTTCTGGCGTGAACTTCCGCCCTGTGTTACC 19083 29 100.0 32 ............................. GTGATTATAACACCAAGCTAAAGAACATTCAT 19022 29 100.0 32 ............................. ACGATGGTGACTAAAACATCAAACAAGAAGAA 18961 29 100.0 32 ............................. ATATTCAAATAATTGCATCCGCTTCTAGTCGT 18900 29 100.0 32 ............................. CTTTTCAACACCCGCCGCTGTATTATCAATTG 18839 29 96.6 32 ............................T TGAGTTTTCTTAAGGTCAACACCAATACCGCA 18778 29 100.0 32 ............................. CCAAGAGCGACCAATTAAACTTTGATGATATT 18717 29 100.0 32 ............................. GCATATTCAACACATTTAATCTTGCGCTTGTT 18656 29 100.0 32 ............................. GCTTCAGCGGGTGTCATCGGGTACTCTTGTTT 18595 29 100.0 32 ............................. CCTATCCATAAAAGCAGCAATGGAAAAGTCAC 18534 29 100.0 32 ............................. ACATTGTAAACGACTCATTAAATGATTTATTA 18473 29 100.0 32 ............................. TAATGATTACGTTGTAACATGCGGCGTTTTAA 18412 29 96.6 32 ............................T TGTCGATTTGGCAACTGCAGCAACAATGGATC 18351 29 100.0 32 ............................. GTTTACCGATGGATGGTAAATTCATTGTCGAA 18290 29 100.0 32 ............................. CCCTTTGTCTTTAGCGTGTTGACGACCGTTGT 18229 29 100.0 32 ............................. GTATAACGATGGTCGGTAGCGGTGAAAAAATG 18168 29 100.0 33 ............................. TACAACGATGATAATTAACGATGCGATTAAATT 18106 29 100.0 32 ............................. GATCCTGACTGGAAATTACAACCAGGCGATAA 18045 29 100.0 33 ............................. TTGTAATAACTAAACCCAACACCAAAATTAGAC 17983 29 100.0 32 ............................. CGCGAGCGCTCCCAGGCAGCGACGCACAGAAA 17922 29 100.0 32 ............................. GCTTGGCGCTTGTACGAAATGGCCGAAGTAAA 17861 29 100.0 32 ............................. CAGTGCACGCAGCGCATGGTTCAAACAATTTA 17800 29 100.0 32 ............................. CTTAAGGCTCAGGCAGAAAAAAACGGTTGGAA 17739 29 100.0 32 ............................. GTACTATTGGTCAGGTCATCGAAAACCTTGTC 17678 29 100.0 33 ............................. GAATATAAATTATGAAATTTTACGCAGGCTTTC 17616 29 100.0 32 ............................. CGTTCGTTTAAAACTACCTAACGGTTCGACTA 17555 29 100.0 32 ............................. CCATTGCCAGTCAGGCAAATTACGACGAGCTG 17494 29 100.0 33 ............................. GTATTGCAATATGGTGTCTAGCAGGTTTAACGC 17432 29 100.0 32 ............................. CCATTGCCAGTCAGGCAAATTACGACGAGCTG 17371 29 100.0 32 ............................. TAACCATGTGGTCACAACCCACGGAAAACGCA 17310 29 100.0 32 ............................. TTTGCAGTATCGGTTGGTTCTACTGGCTTTTG 17249 29 100.0 32 ............................. CATTATGAGCTTGCGTCCTATATCAATATGGA 17188 29 100.0 32 ............................. TTTTCATTGAACACACCAATTTCTTTAAAGTC 17127 29 100.0 32 ............................. TAATACCAAAATTGTCAGATCGTGTGGCTGGT 17066 29 100.0 32 ............................. GATGTGAAATTACATGATGAAAATGGGTTTCC 17005 29 100.0 32 ............................. TCTTTTAAGTCGCCAAGATTGACCGGGTTAGT 16944 29 100.0 32 ............................. TCGTATGAGTAAGACGGCAATTAAAAAAGAAT 16883 29 100.0 32 ............................. TCATACGCTAATTTCAATTTCTATGCTAACCC 16822 29 100.0 32 ............................. GCCATTCGCAAACATAGAAAACTGGCTTAGTG 16761 29 100.0 32 ............................. TTGTTCGCCTCCGTATGAGCACCAGTATATAG 16700 29 100.0 32 ............................. CGTTAAATAGATAATGTATGAATAAGAAAGCC 16639 29 100.0 32 ............................. CTCTGATTGATATGATTGCACTTCCTCATGCC 16578 29 96.6 32 ............................A CACTAAAATCAGCGTTAATCAGTAGATTAGGA 16517 29 96.6 32 ............................T GTAGTAGTTACCTATAGGACGACCAATCTTAT 16456 29 82.8 32 ..........T.T.T........G....C TTACCAGGAATCAGCTTGATTGAGGCTTCAGT 16395 29 79.3 32 ..........TG..TA.......G....T ATGCAAATAAAACTTCTATCCAAATCGGTTGG 16334 29 89.7 32 ..........T.T...............T CATGACTTTATAAACAGGATAAAATTCATCAT 16273 29 75.9 32 ........T.TCTT.A.......G..... CAAAAAGCGTAACAAACAAAAGCGAGGCGGAA 16212 29 72.4 0 .C......TTT.T..A...........TA | ========== ====== ====== ====== ============================= ================================= ================== 51 29 97.8 32 GTGTTCCCCGCACCCTCGGGGATAAACCG # Left flank : CACTTATCGATGAAGTACTCAGTGCGGGAGATATTACAGCTCCTGAACCTTATATAGATGCGCAACCTCCTGCTATACCAGAGCCAATTACGATTGGTGATAGTGGCCATAGGAGCAAATAGTTTATGAGTATGCTTGTTGTGGTTACTGAAGTGGTACCGCCTCGATTACGAGGACGTCTTGCAGTTTGGTTATTAGAAGTTAGGGCTGGTGTATATATAGGGAACGTTTCTCGAAAAATCAGAGAAATGATCTGGGAACACATTGAATGCCTTGCTGAAGATGGCAATGTTGTAATGGCGTGGGGAACCAATACCGAATCAGGTTTTGACTTCCAAACTTATGGCAAAAACCGTCGAGAGCCCGTTGATTTAGGCGGGTTACGTTTAGTGAAATTTTTACCCGCAGACATGATTACTGAATGAAAAAATGTTCTTTAAAAAGTTGGTAGATTTTTAATGATAGTTATTTGCTATGAAAATCAACAGATTACATTTAGA # Right flank : ACTAAATTTACCCGTTCAATATCGGGGTTTTGATTAGATGTTTTAGGTTTAAGTCTTATTATGTTTTGTTTTTATAATTTTTTGTGTGTAAAAAGCACTCATAAAGTGTTGAACAAAATAAGAAGATAAATGGCTTTAAAGCTCAAATTTTATGAGGGCTTATACAAAATTAACATTCATAAATAACTAATATTAAATAACTTAATTTTGATCTATTTTTTTCTAATTCAATAGCGTGTTGGTTTAAGCCTTAAGTGTATTCTTTTACATGAAAGTTAGAATACTTATTTGCAAGGTTGTTAAGTGCCCATTGAGCTGTAGGACTATGACGAATAAATATGAAATTATTTGAGACTATTTCTCTGAAACTCCCAGAGATAAACGATGTAAATTGCAAAATTCACTTGGCTGTATGGAACGGAAAAGATAATCCACTTGATATTTTCTTAGCTGGAAATTTTGAAGAATGGCAACGCTGGCAATCTAAGCGTAACTTCGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCTCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.70,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [31-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106384-107084 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOK01000004.1 Photobacterium angustum strain ATCC 33975 CFSAN065437_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106384 29 100.0 32 ............................. CGCATGGTTAACGGTAGATACCGCTATTTTTA 106445 29 100.0 32 ............................. ACTATGGTCTATTTTTTTAATACGTGACTTAT 106506 29 100.0 32 ............................. GTTAGCCAGGTAACGGTTTCAAGCTGGATTAA 106567 29 100.0 32 ............................. CTGATTTAATCAATTGCCAGTGCAAGATTTGT 106628 29 93.1 32 ........T......A............. AAAGCATCTGATTTATAAACATCTTTGTTGAA 106689 29 96.6 32 ...............A............. CAAACCACTAAAAACATATGATGATTTGAAAG 106750 29 93.1 32 .......T.......A............. TGTCTTATGTTATGCCAAAAGTATGGTATTCG 106811 29 96.6 32 ...............A............. TGCCATATGGGGATCGCTAATTCTTGAGGCGA 106872 29 89.7 32 .............C.A.....G....... ATTATAAATACGATTATACAAATATGAGTTAA 106933 29 89.7 32 .............C.A...A......... CTTCTTGCTTTTGCTCTGTTTCAGTCACAGCT 106994 29 82.8 33 ..A.........TC.A.....G....... AAAAAATACAACTTTTTAGAGTGGGAAGATCGC 107056 28 86.2 0 ...............A.......-..G.A | T [107081] ========== ====== ====== ====== ============================= ================================= ================== 12 29 94.0 32 GTGTTCCCCGTACTCTCGGGGATGAACCG # Left flank : GTGGCTCAAGAGCACTATTAGAATCGGTTTCTAATAGTGGGCATAAAGCGGCAATTTGTCCAACTCTAATGTCTGAATGGAAGATGCACCGCTCATTGTTTGCTCGAAAGTGGTTGGCTTCTATGATCGCAAAGAAACAAGTTAACTTTATAAAACCGCAGAGTACAACAACTGACCTTATCAAAAATCATTTAGAGAATGCGAAATATATTTCTATTGCTAGTAAAGATGCTCATCTGATTGATGCAGCTATGATTTCAGATAAAATTATTGCTTCAAATGACGATACTGCTAGAGGTGTATTCTGTGAGTTATCAGAATGCTATAGAGGTATAAGAACTATAAAGTGGTTTAATGCTATAACCGATAGAGAGTTTGTCTCAAATTTTCTATCATCAGATTGCTTTGTTCCTGAAAAATACTACGTAGTTCCTACTAAAGTTTAAAGTAGACAAAGTGTTTAAAACGTTATTCAGGTTGAGTTAGTTAGGTTTTATGGT # Right flank : ACAATTTTCATGGTAAATTGTGTCGTTATATAAGTTCAAACTATTAGGGCTTTTAGGTTTGAAATTATTAACATAACTTATGAAAAACAGTGATTGTTAAATGCTAAATAAGTTTTCACTCACAATACTTTTCCTAATATAAAACAGGCCTTTCAATGACTATTTGAAAGTAATAACTGTCCAATTATTGGTTAGTTCAAATAAACAAAGCGATCTCTCACCTAGATCGCCTTGTTTTCTAAAACCGCTTTCCAAACCTGCTGGTATTATCCTTCCATTCTTCAACGGCCGAACGTAACCAACGTAGGGGCATCAATGTAATTGGCTCAGGGAAACCACGTGTTTGTCGCCACTTATAAATAGTTGCTCGACTTGTGATTTGAAACATCTCTAGTACTTCGACATGACTAATCAAAAGATGCGTTGATTGCTCATTAAGTTCAGCATAAGTCTTTGCTGGCTGCGATGAATCAGGTAGTTGCTTTTCTTGTTTACTTTTA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCTCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //