Array 1 297339-297593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000003.1 Anabaena cylindrica FACHB-170 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 297339 35 97.1 37 ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 297411 35 100.0 38 ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 297484 35 100.0 40 ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 297559 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 99.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTGGTCGCAATTTGAAAATGTTCGGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATAGTATAGTGCTGCTAGATTATTTAAAGATTGGGCAACATCAGGATGCTCTGAACCTAAGAGATTTTTTCTAATAGTTAAGGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATGCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATACTCTGTTAGCTGCTGGCTTTTCCCTAAGTTGACAGCTTGTTGGGCAATAATTATCGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTGTTTTAAGAGTTTTTTCATCTGCTAGTTCCAGATGTTTGTATATTTTTTAGGTTTGATTTTTCAATCAGTTATTTATTTTATCTAAAATCGTTCATCATCA # Right flank : CCCTACCCTTGTAGAAGCATTACTACGAGAGGGTTTGAAGGGGTCATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATTGATGACTCATGCACCCTATTGAAACCCTTGTACAGTAAGCGATTAGCGGGGGTCAACGAAAGAATCAGTGTTTTGGCGATCGCTCTACCCCCGCTAAAAACTTACGTATGGAAAGTAAAACTAAGCACTTTTGCGTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTTGCTATTGAGCAGTAGTATAACAAACTACTTGAAGTTTTGAACCCTTAAACTATTAACTTTTCTATCATGCAGTAATCATGTAATCTGTGTACCAAATTTGATATTCTCCGCCTCCAGTCACATATTCTAGTAACGCCACCAGATGACTTGCTTCTAATTCCAAAGGGTCATTATCTCCTGGCGGTAGCCAGTCTAATTCAGGTACTTCGTTGGTAAAAACTGCGATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 302844-301791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000003.1 Anabaena cylindrica FACHB-170 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 302843 35 97.1 36 .............................C..... AAAAAAAAGCCGCATTTAATTTGGCAAATTCCAATG 302772 35 97.1 39 .............................C..... CGGGCTTGTTACCTTAGAGATACATTAAAATTAAATCCA 302698 35 97.1 36 .............................C..... TTTTGGTTTACGTTCCTATTGATAACCAGTTTGAAG 302627 35 97.1 35 .............................C..... CTGAAGAGATTGAAAGACTCAAACGCCAGGCCGAA 302557 35 97.1 39 .............................C..... CGTTTTGTTGCTCGCATTATCGTTTCTTGCATTTTATTG 302483 35 97.1 40 .............................C..... TTACAAACTTTTTCTATCCACCAGTTCCGTTTTTTATTAG 302408 35 100.0 39 ................................... CTAGTTGGTCCGCTTTCAAGCCCAACAAATTATGATAGT 302334 35 100.0 38 ................................... ATAATAATTTTCTTTATATATTTCCTTGTCTTTTATTT 302261 35 100.0 35 ................................... AGAAATTTCTATCGGAGGTGTAGGCGCACAATAAA 302191 35 100.0 34 ................................... TGGTGGAACAAGTTTTGTCGGAATCGGTGAAAAC 302122 35 100.0 39 ................................... ACTCTCCGCTTTGCTTGTTGTTGCCATTAAGGCACAAGA 302048 35 100.0 39 ................................... TATATCTAGAATTCCAGGAATAAATTTTCTAGGAAGCGT 301974 35 100.0 40 ................................... ACATATAATCGATGCAGAAATTCAAGCTTTTCTTAGCAGT 301899 35 100.0 39 ................................... CTTTTTAATAAGTTAGACCCAAACACACAATTTCTGATA 301825 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.8 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AATCTGTAATTTTATTTTCTACTTCTCGGTTAATTAATTGACTGGCTAATTTTTTCGCATCATCTAAATTTTTACCTATAGCAAAGGCTAAAAACCCACCCAAAAATGCAAATACTACTAAGGTAAATTGCATTGCAGCAACAAATCTGTTAAAGCTTTCACCTAGTTGACCATTGGTAGCCTTGAGAAATTCTAACTGGCTTTTGAGTAGTTCAATATCATTGATATTTTTTGCCGGATTTACCACTGGTGAAGGTGTGGTTGTAGGTGTTGGAGTTTGGGCAATAACTAAATCCCAAAGGTGGGATAAATCAATTGTAGGTAGCCAATCCATAGGTATTTTGTTGATGGCGATTACTTCTCTATTTAATCATGTGCGATCGCCTGCATTATTTTATTCCAACTTTAACTTAAGCGATCGCAACTTCCCTTAAGTTTCAATAGTGGTTTTACTGTGCGATCGCATTACATCACCGCTACTAAATCCCGCTATTGATTAT # Right flank : CCTACCTGTTCAGAAGCCTTGCCACGATTGAGTTTGAGATAGGTCAATCTGAGGGGGTCATTTTTTCAGCCCAATAATTGATAAACTCTGTCAATAAACCACTTTCTAATGAGCCTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCGTTGCCTGACCCCCTCAGATGCTTATCATTCAACAAAAAACTATAAGTTTGCCAAATGAATCAGAGTAAATGGAAATACTTAATCTAAGTATTATTAACTTTTCATGGTTCAAAAACTCTGATGATCAGTGTATAGAAACCTACTAAAAAAGTCAAGGTGAAGCATAAAGTATAAAATTACGCTCCCTTCCTTCCCCTTTTAAGCCTACTGTGTACACACAAGCCCACGAGATGTTCCCTACGGTTAGGCTTATACCATTTCACTAAAATTCTGATACAGATCCAAATCCAGAAACCTTTGCAAAATATAGGTTTCTTAATTTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 53682-52771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000034.1 Anabaena cylindrica FACHB-170 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 53681 37 100.0 37 ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 53607 37 100.0 35 ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 53535 37 100.0 33 ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 53465 37 100.0 35 ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 53393 37 100.0 35 ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 53321 37 100.0 35 ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 53249 37 100.0 41 ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 53171 37 100.0 34 ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 53100 37 100.0 39 ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 53024 37 100.0 33 ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 52954 37 100.0 37 ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 52880 37 100.0 36 ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 52807 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAAGTTCTCAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGTCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATTGGCGGCGAAATGCCAATAGACACCACCGTATTTTTTGCTTAACTTGTGCGTCAACCTATAGGTGTTGGGCAAACACACTGAAATTTATCGTCCCAAACCCTTCCCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCCTCACCATAAATACTTTTGCACCAATTTTCTCCAATTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTCCACACCTGGGCG # Right flank : ATCAGATGCGGTAAACTTAATTGTCAGATTTTCAGCTTTATACCTTGCTCTCTTCGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTGTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACATCTCGCTGAATAATCTCTTCTACTTGATTGGCAAAGTTACTAAATGCTTTATCGTGGGTTTCATAATTCACATAAGGCCCAGTTAATTGAAAGAATTGCCAACCTTGTGTTTTCAAAGATTCGGCCGTGCGGCGATAGTGTCGCCAGCGTTCTCCATAGTGGAAAAATTCTTCAACAGCTGCGCTAATTGCTACAACTTGGCTAAGGGAAAAAGTAGCCCAAACAAAAATTTCCCGCACCTGAGAACTGTTAATATTGAGACTTACCAAAGCGGGTAGAGCTACACCACCAATAATTGTGACCAATCGTAATCTGTAATATCTATTCCGTGATTTACCTGCTTGTCTTTCCATCCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 146272-145005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000001.1 Anabaena cylindrica FACHB-170 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 146271 37 100.0 34 ..................................... GCTCTTACTGATGCCACATCAATCGCTGTAGATG 146200 37 100.0 34 ..................................... TGATGTCTAACCCCAGCAATCTAATCGCTGGCGG 146129 37 100.0 36 ..................................... GAATCTTCACCCACCCCCCCCCATCCCGCAAAAAAC 146056 37 100.0 40 ..................................... TGTTTACTTAGCAAAGAATAGCTTAAATACTTTTGCTATG 145979 37 100.0 34 ..................................... AAGAGAAGAGGCAAAGTGAGCCACCCCCCTAGCA 145908 37 100.0 36 ..................................... ACCCTCAGCCTCTCTATCACGCAATCCAAAGCTAAA 145835 37 100.0 34 ..................................... TGACTGTATTAGACGATTTGCTGATAATGTGTGT 145764 37 100.0 175 ..................................... CAGACTCATTGATTACAGGTGATCGCTTCTTGTGTTTTAACTAACAAAACGCCGTGTGCAACTTTCTCCCAGACCTAACCCCCAACCCCTTCCCTACAAGGGAAGGGGAGTAATAATTAAAGCCTCTCTCCTTGCAGGGGAGAGGTTTGGAGAGGGGTTTTAAGAATAAGTCGCA 145552 37 81.1 44 CA.CGCGT............................. TCGCTTATACAACAAAGGGATCTTCTTCAATGTGTGGAACGAAG 145471 37 100.0 34 ..................................... TCGCTTATACTGCGTGGGGAAAAACAAGAAAAGG 145400 37 100.0 36 ..................................... AGGAAACAGCATCAAAAATAAATAATCTAGCCTCAA 145327 37 97.3 31 ..........................T.......... TGAGCTTTTTTATCAAGCTATCTTCACTCAT 145259 37 100.0 34 ..................................... TCGCAGGGCAACCCTCAACAACGGAACCATATCG 145188 37 100.0 36 ..................................... AAGTACAGATTCAAGTTGCATCAGCAGTAGCTGCAA 145115 37 100.0 37 ..................................... GCTAAAATGCTAAAAAAACAGCAATAACGATTGATAG 145041 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 16 37 98.3 45 GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACTTATTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATTAGCGTCAATCTATAGGTGTTTTTTTCACAGTACCAAATTTTACGGCTAAAATGCTTATACTGTCATGGCTTGAGTCAGTTTAGCTTCAGTATGAGGTTGACGCGATCGCCTGAACCTTTGCTAGAGTATCTTTTTCGGTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCAGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACTCAGGCA # Right flank : AACTCTTAAAACAACCTGCACCTAAAGCCGCTTTACGTAGGGTTTCAAAAAACAAACCCTGGCTAATTATCTATTTAAAAATAGACGGTAGAATGCTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATATAACTGTAATGACAGCAGTGACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCAACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATAAGTAATATTGTCAACCAAGATATACAAAACCCGTTGATACGCCAAATTAATGGGTTATGAGCTATTTTGCTTAACCGGGGACGGGCGATTTTCTCTACAACCTTGGTGACACGCCGCAGATTTTGGAGGAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAAGCATCTGTACCGATAATATCAGACAGGCAGCA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.90, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 468105-468722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000001.1 Anabaena cylindrica FACHB-170 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 468105 37 100.0 34 ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 468176 37 100.0 34 ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 468247 37 100.0 44 ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 468328 37 100.0 36 ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 468401 37 100.0 36 ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 468474 37 100.0 33 ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 468544 37 100.0 35 ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 468616 37 100.0 33 ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 468686 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 36 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : GTGCTATTGTCACACTTGCTAGTAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAACTACAGTTATTAAAGTGTGACCAAGCCCAAGGATATTTGTTCTCCAAGCCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAGATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACGGAAACAACGAGCTAGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTGAATGTAGTTGACACCTTCCAAGGGTTGACGCAAATTCTGAAAACCTTGCTATGACTAATTTCCAGAATTTATTCCCATTGTTCCTCTTGACAACCCAAGGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCTGTAACTAGCC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTCTGCGTGATAGAAATCATCCCGCATTGATGCAACGCGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATAACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATTCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGGTTTTCATGAATGTAGGAAATTGCTTGCCTGAGTTTCCAGTGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATTGTTCCACCTGTTACGCAATAGTGTTTGAGTAGGTGAATACACAGCGTGGTTGTTAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 173837-171619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000012.1 Anabaena cylindrica FACHB-170 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 173836 37 100.0 34 ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 173765 37 100.0 42 ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 173686 37 100.0 48 ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 173601 37 100.0 47 ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 173517 37 100.0 43 ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 173437 37 100.0 44 ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 173356 37 100.0 41 ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 173278 37 100.0 46 ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 173195 37 100.0 39 ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 173119 37 100.0 36 ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 173046 37 100.0 44 ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 172965 37 100.0 45 ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 172883 37 100.0 44 ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 172802 37 100.0 37 ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 172728 37 100.0 45 ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 172646 37 100.0 42 ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 172567 37 100.0 47 ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 172483 37 100.0 41 ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 172405 37 100.0 35 ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 172333 37 100.0 35 ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 172261 37 100.0 40 ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 172184 37 100.0 33 ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 172114 37 100.0 37 ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 172040 37 100.0 42 ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 171961 37 100.0 39 ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 171885 37 100.0 39 ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 171809 37 100.0 43 ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 171729 37 100.0 37 ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 171655 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.7 41 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TAGAGGAGTCTGTTTTGAATTATCAGTTAGAGAAGCGTTGGCTACCCATACTGAAATTAAGTGAGGACAGTCTCAGGGTTTATCCTCTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAACCACCAGATTATTTAATTTTGTAACGTCTATACTCTGGTGAAAATGATGTTTTTAAAGGCTGAAACGCAAATTTTTACTAGGGCTTGGCAGTTTGTAACGGATTGTAAATGTCACTGCTAATTCGTCGCAGGGAGATATGACAAGCTAGGAAGAATAAATATGTGTAAATAAAAGTAAAGTTAGTAATTTAACCTTGACTACTGGAGTTTATTCGGTTAAATTGTCTATAAAGCTGAATTTTGGTAAAAAAGCTTTTGATTTATCACTACTGAGTGTATAAACTACAATAGCTTTTGCGTACCTCGGCGCAACTGAACCTTGAAATCTAAATATAGTAATAGTTTCCAAAGGGTAGG # Right flank : GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATATAGCTGTTACCAGTAGTGTTAGAACATCAATAGATGATACAACCTAGACACAACAAGACTTTTCACCCAGTACCCAGTCCCCAATCCCCAATCCCCAGCTATATGATTGAGCGATCGCCAGAATTTGGATAAAATAATTGACGGGACTATAATTTTGGGCGTTGCATAAATGCGGGATGAATTGAGACTTTTTTGTAAAGCAGAATATTGATTCTACCCTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTTTGCAGACATACTTTAAGGAAATCTCCCCGCTAAATTCCACTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTACCGCAAGCGGAACGCCTGGCGGCGAATGCGTGAGACAAAAATCATCCCACTAATCAGCAACGCCTAATTTTGAATTACCCAAAGAGTGGGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 765-443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000065.1 Anabaena cylindrica FACHB-170 contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 764 38 97.4 34 A..................................... CTGATGAAGAAAAAGTTAGTATCTTTATCCATCG 692 38 100.0 32 ...................................... GAAGCGGTGGGGCGATCGCATCCAAAATTTAA 622 38 100.0 33 ...................................... TTTGAATATTCAGAACTTTATATTGTGCGCGAT 551 38 100.0 35 ...................................... ATTAACAGCTTCTACCAAATCAGCTTGCTCCGTCA 478 36 78.9 0 G.................G.....AC-.T...-....A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 95.3 34 CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTATGCTTATAGTCTCCGCCTAGCTAGGCGAAGTTGACAAACATCTGAACCTTGAAAATATAATATGTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGCCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTGATTTGACGCACCAAAGAGAGGTCAAAATTCCGATCTAGGTTCGCGCACATCCTGAAAACCTTATCCTACAAGGAATTTATGAGTAAATTTCTTTTGTAGACAATTCAAAAATTACATCCTGGGAGGCTATTTGATGAGGTTCGCGCAAATCTGCTTCAAAAACCTTGCTAGACAAGCGTTTCATAGAGTGGC # Right flank : ACAAATTGGATATGAAACTGCCTTACGTTGTCTGATGGTGTAATTAATTTCCAAGAAGTAGAGGGTTGAAAGCAAATCCCGTCATCGGCTTGTAACTAAAGTTATTCAGGATAAGCTACTCATAGAAGTGATTAAAAGAGCTTTTTGAATGCAAACGCTTATAATAGGGGCTAAATATATAGAGAAACTCCATATATAAATTGTTGCTTTTCCGAAAAATGACAATAATTTGTCACAAATATATATGGAAGCGAGTTACTAAGTTGGATGACAATAATTTGTCACAACGACATCAATTTGTCACCGACGACAAATAAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCTCATAATCCTTACTGAGACGACGGTAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 102353-101444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000016.1 Anabaena cylindrica FACHB-170 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 102352 35 100.0 41 ................................... TATATATCATACCAGCCCAACCAGTTGGAATTGCTCCAGCA 102276 35 100.0 39 ................................... TTGAAGCAGTTGCAGCCTTTTTGCGAGCTTCTTCTACTT 102202 35 100.0 41 ................................... AGTATGCTGACCAGCGCTCCACGCTTGGTCGATTTCATCTT 102126 35 100.0 40 ................................... GATCGAGTCAGATCTACCCAGCGGGCGCTGAGCGCTTTCA 102051 35 100.0 39 ................................... CCTAACTGTTCGGTTGCTTTTGTGGCAACCTAAAAAATT 101977 35 100.0 40 ................................... ATAAAAGACATATTATGCCTTGTTTGCCCTATCATAGACA 101902 35 100.0 42 ................................... AAATATATTGAGCAACCTACGTTGCATACAATATAATCCAGA 101825 35 100.0 168 ................................... TTTATAAAACCGCCTCTACCTTGAGCAACATCTTGTTGGCGTTGTATAAATGCGGGATGAATTGAGACTTTTATACAAAGCAGAATATTGATTCTTTGCGCCTACTCTTCGAGTTCCGCTTGCAGTATGCGTGATACAAAAATCATCCCACTAATCAGCAACGCCCTT 101622 35 91.4 38 ........A...........TG............. TTCCATTCCAAACCTTCTGTGCCACACATAGAAAAAAT 101549 35 85.7 38 .......G...........CTG........A.... ACTAAAGGATGCTCAACCACCAAGCCTTGAAAATTAAG 101476 33 91.4 0 ..........A...-...............-.... | ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 11 35 97.1 53 GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Left flank : AACTACGAAATTTTCTAGAGGTTTTGACCCGGTAAGTAGAAATATGCGGCAGTTTTAACAAAAGCTTTGCCTTTTGGAGTTTGCTATGGTACTGTTTTTACAAACATCTGCACCTTGAAAATTAAATAAGTACATATAGCGTTTCTCGTTTGTCTGCAATACGTTTTGACTTCTATCCTACAAGGAGACAGGCTTTAAGGCTTACTCTGGAGGTTAAGTCTGTATTAGACTCAACTGCAAACCGCTATATTCTTAACTTGTAATCGAATGGTTAGTTTCGTCAAGTTATTTTATTAAGAAATGTAACCTGAGGGGGTCGCCTAAAGCCTGAAAAGCTTATTATCTCGTTGACCCCCTCAGATAGCTTACCCTATAAGGGTTTGAGTCACCTTGATGATGTAGTTATTGTCAATAAGCGATCTCTATTGACAGGTAAAATATACCCCCCTCAGTTTTACAGTTCTGTAAGTCTTATTTGGTAAGCTTTCTGTAAGTGTAGG # Right flank : AGAAAGACGATCGCCTAAACTATCCAAATATGTAGAGAGACACAAATATTTGTAGGATAGGTAGAGCGATCGCCTTTTAACTAAAGCCTATGCAGATATCATCTTCCGGCTATATCCTAGCGTTGGACTTGGGAACAACTGGAAACCGGGCATTTATCTTTAACAATGCAGGTAAAATAGTTGCTCAAGCATATAAGGAACTAACACAACATTACCCCCAACCAGGATGGTTAGAGCATGACGCGGAAGAAATCTGGCAAGATACCTGCTGGGTGATGAAGACAGCCATCGTCAATGCACAAATATCTCCTAGTGAAATTGCGGCTATAGGTTTGACTGTACAACGGGAAACTTGCCTACTCTGGGACAAAACCACGGGGAGACCATTACATAAAGCCATTGTTTGGCAAGACCGCCGCACGGCTCCCCTGTGTCATCAGTTACAGGAAAAAGGCTATGCTCAGGAAATTTACAGTCGTACTGGTTTAGTAGTTGACGCT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 114353-113586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000017.1 Anabaena cylindrica FACHB-170 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 114352 36 100.0 33 .................................... TTGTCATCTAGAAATGCAGCTTTGTATGCAAGA 114283 36 100.0 45 .................................... TTATATTGGTAGAGGCTTTTTTAGCTTCGTTTATATCAATGTGCA 114202 36 100.0 37 .................................... GCAGGTATTGCTGCTTGCACAACGCTTGCAGTAGTTA 114129 36 100.0 37 .................................... GTTTTTAATCTCCGAAGGACTAATGCTTGGAGCAGGA 114056 36 100.0 39 .................................... CGTTCCATCTGCTGTTCGTGCAAAAAGCGATGGTCGCTT 113981 36 100.0 35 .................................... TCGACGTCCTATTTTCGAGATTCCTCGATAATCAT 113910 36 100.0 32 .................................... AACAGTCACAAATCCTAGAGTGGCTAAGGGAG 113842 36 100.0 37 .................................... ATCTTGTAATTTCAGGATATAATGCAAAGATGATTGA 113769 36 100.0 36 .................................... ATCCGACATCGCTATAGAAATTGTTTCCAGTCTCTC 113697 36 100.0 40 .................................... CCGATAGCGAATGCCGTTTATCTCCAGGCAAAAGATAAAG 113621 36 86.1 0 ....T.....G.C.................AT.... | ========== ====== ====== ====== ==================================== ============================================= ================== 11 36 98.7 37 CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Left flank : AAGACAGGCTTTAGTTGATTGGGCGCAGAAAAAAGGAGTGCAAGGAGTTAATGACTATCGAAAGCAAAAAAATGTTGTGAGTATTGATGGTTTACCGACTCCACTCAGCAAATTATTTTAAATGGGTTTTAGTGGGGGATTGGTAATTGGTAATCGTAAAAAGCAGTTACCTTTTACCAACCATCTTGTAGCCAGACTTGATATTCATTGAAATGGGCGTGCAATTGCTCAAAATCCACTGTTTTTGTAACGATTATGTAACAAATTTGACAAAAATGACTAATAAATTTTATTTTAAACACTAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAGGATTTCCGGCTGCAAAATTCCCCACTTCTGAAATTTATTTGATTAAATAAAAAAGTGGTGTCGAATTTGGGGTCTGAAACCCTCTCTATACAAGCGTTGTAGAAGTGAACT # Right flank : TAGCGATCGCACTTTGCGATCGCATTGTTAAATACGGCGGAAATATTATTTACCTATCAATTAGCCTGAGAAAATATCAGCAAAGATGTAATTGCTTTTGCTACAAAGATGATATTTGTCATAAATAAGTAATTGCCGAAAACAGAAAGCATTTACAACAAATGAGAAAGCAATATCTCTAATTGCTTGCGGAAAACACTGAAATGAATACGCGATCTACTGAAATGAGAAAGCATTTACAGCAAATGAATAAGCAATATGTCTAATTGCTTGCGGAAAACACTGAAATGAGAAAGCATTTAAGGCAAATGAGTAAGCATTTAAGCATTTTGCTTTCTCAAACAGGCAAATTATATAGCTGTTGACGGTTGACAGTTGACAGTTGACGGTGAGGCAGTCGCAGTTAGTTAGTAGGTTGGGTGGAACGAAGTGTAACCCAACAAATAATATTGATAAATTAGCAGATTAAACTACAAAAATACCTCAATTTAATAAATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 121588-121341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQR010000017.1 Anabaena cylindrica FACHB-170 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 121587 32 100.0 41 ................................ TTTAAGTGGTGGCAGCGCTGCTAGGATTCCTAATAGGTTTC 121514 32 100.0 39 ................................ AATAACTGGATAGCACTAGCAGAAGGGCTAGAAGGTTTC 121443 32 100.0 39 ................................ GTATATCAAGCGGGTACAGGTAACTCAGGAAAAAGTTTC 121372 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 4 32 100.0 40 AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Left flank : TGTTCAGGGTGAAATATCAACAGAATCCCAATCCAGGTAGAACTCAGCACTAAACCAGCACTAATGAGTAAAATTGCGATCGCAATTATTGAGGATGGTTTATAGGATTTTGATGGAGAAATCGCTTTCTGTATCTGGGTTTGATTAATTTTTCCCTCACCTTCTTTTGGCAAATCGGTATTACCTACCTGTTGTTGCTGGATTTGAGGTTTCTTCCCTTCCAAATCAGAGCCGTTTTGCTTAGAAGATTTTGGCGTTAGCTTGCGCGAGCGATTTGCCATGTTATTTCTCTGTTAATTTAAGGTATTAATTTGTGTTTGTTTTTTCTTTTATACTCGCGCTTTGATTAGTTGCCTAGAAGTAGGTGGTTTAATTTTCTACACAAAAAGGATGAGTAGATATTTTGGGCGATCGCCTTTAGGTATTGCTTTGCCTAGCACGTTGGGTTTTCCGCAAAATTAGGGTTGTAGTTTAGAGTACTTACGCACCAGAGTCGTTTT # Right flank : CGCTCGGCTCTCAAAGCCTTGCTGTATTTGGTTTTCAAGGTTCAGTTGCGTGAATTATGGAGCAAAGATAACTTTTCAGACATGGGATTGTCAAGAGGCGCATGGCAAAAATTAACTCAAAAGCTGTTACAGCAAAGGTTAGAGGTAATTGCGTCAACCACAGTTTTAATGTTATGGGCTGTAACCTAATCAGGGTAAGGCATAGAGGCAAGAAACTGAATCTGTGCCGAAAAACATCTATGGGTTGACCGGAAGAGGCAGGGCGAGGCTTGTACAAGCTTCCGTCACGGATTTCCCCCTTGCTCCCTGCCCCCTGCCCCTTTTCCTCTTGCTGACGCAATATTTTAAAAACTAAAGGTGGTACGGATAGCACCGATGAAAATATCATTGTTGCTGGAAATATGACCAGGGTCAGTGACGAGAAAAAAGCCAGGAGTGATGGCGATATTATCATTGACTAAATAGCGGTAAAAAACTTCGTAGTGAGTGGAATTGCCAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //