Array 1 128742-126883 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPKK01000010.1 Escherichia coli strain MC185 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128741 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128680 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128619 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128558 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128497 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128436 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128375 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128314 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 128253 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 128192 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 128131 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 128070 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 128009 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127948 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127887 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127826 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127765 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127704 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127643 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127582 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127521 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127460 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127399 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127338 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127277 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127216 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 127155 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 127094 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 127033 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126972 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126911 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155877-154445 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPKK01000010.1 Escherichia coli strain MC185 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155876 29 100.0 32 ............................. TATCAGGAGCGTGAATAGTTTTGTGTTTTTGT 155815 29 100.0 32 ............................. GCCGCTGTATCCGTAGTCCGGGTGATACGGTG 155754 29 100.0 32 ............................. GCTCACTACCGCCGAAATCGCGCAGGCACTCC 155693 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 155632 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 155571 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 155510 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 155449 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 155388 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 155327 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 155266 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 155205 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 155144 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 155083 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 155022 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 154961 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 154900 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 154839 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 154778 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154717 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154656 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154595 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 154534 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 154473 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //