Array 1 90972-92341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOLF01000203.1 Cronobacter sakazakii strain 702 contig0264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90972 29 100.0 32 ............................. CATACGAACGCCGGCGTCACCGTTGGCGAATC 91033 29 100.0 32 ............................. AGTGCGCCCACGTCGCGTTTTACATTTGCGAC 91094 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 91155 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 91216 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 91277 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 91338 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 91399 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 91460 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 91521 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 91582 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 91643 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 91704 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 91765 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 91826 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 91887 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 91948 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 92009 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 92070 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 92131 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 92192 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 92253 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 92314 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29287-28831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOLF01000035.1 Cronobacter sakazakii strain 702 contig0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29286 29 93.1 30 ...........A.............G... CAGGAGGGCGGGAATATTTTCCAGACCGGC 29225 29 93.1 32 ...........A.............G... TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 29164 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 29103 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 29042 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 28981 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 28920 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 28859 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //