Array 1 20883-21277 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNO01000049.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001367 contig00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20883 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 20944 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 21005 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 21066 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 21127 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 21188 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 21249 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : CCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2081-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNO01000050.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001367 contig00050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2080 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 2019 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1958 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1897 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1836 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1775 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1714 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1653 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1592 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1531 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1470 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1409 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1348 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1287 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1226 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1165 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1104 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1043 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 982 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 921 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 860 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 799 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 738 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 677 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 616 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 555 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 494 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 433 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 372 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 311 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 250 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 189 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 128 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCAAATGAAAATGGTTAAAGGAGGTCTGTAAGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19343-18705 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNO01000050.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001367 contig00050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19342 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 19281 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 19220 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 19159 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 19098 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 19037 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 18976 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 18915 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 18854 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 18793 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 18732 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTGAGTTCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-428 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNO01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001367 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 93 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 154 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 215 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 276 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 338 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 399 29 96.6 0 ............T................ | A [426] ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTACCTGGTTCGTCTGGTTCAACTATATCGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //