Array 1 4744466-4745393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016214.1 Pseudomonas aeruginosa strain PA121617 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4744466 28 100.0 32 ............................ AAGTGCATTTCATGGCCCTGATGCCGAATCAG 4744526 28 100.0 32 ............................ TCCTCGCTTACTTCGGCCCGGTCCAGCGCATG 4744586 28 100.0 32 ............................ GTGATCCGTAACAGCCCGGTCGCTCGCGAGCA 4744646 28 100.0 32 ............................ AGGCACGCATTGCCTTGAAAGGCGTTCTCTTC 4744706 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 4744766 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 4744826 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 4744886 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 4744946 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 4745006 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 4745066 28 100.0 32 ............................ TTGATGGGTTTGTACTCAGGCCCGGAAAACTC 4745126 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 4745186 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 4745246 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 4745306 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 4745366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6110306-6111114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016214.1 Pseudomonas aeruginosa strain PA121617 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6110306 28 100.0 32 ............................ GTTCGGAAGCCCCGGCAGGTCAAGGGCCGCGA 6110366 28 100.0 32 ............................ AGCCCAACAAGCACGCCGATCGGAATCAACAT 6110426 28 100.0 32 ............................ AGATCGCGCCACCGTACCAGTGCTTTGTGGCA 6110486 28 100.0 32 ............................ TTCTGCTGCTTGGCATGCCAGGAACCGGGAAG 6110546 28 100.0 32 ............................ ATTCCAGATTCTCCACACGGTTATCGTCCTTA 6110606 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCAAACAC 6110666 28 100.0 32 ............................ ATCGAGCGCACCTATCTAGAGGCAGTGAAGAG 6110726 28 100.0 33 ............................ TGCAACCCCACGACGCCGCACTGGTAGAGCTCA 6110787 28 100.0 32 ............................ TGGGATATCGATGGAACTCCTGAGGGAACCCT 6110847 28 100.0 32 ............................ TCGTCCTGGTAGCGCATCAGCGCGATGCGAGT 6110907 28 100.0 32 ............................ TAGCGACCCGTGTTCTTTTGCAGTATCGGTTA 6110967 28 100.0 32 ............................ GGCCAGGTCGAGCCTGAGCCGCGCACGGTGCG 6111027 28 100.0 32 ............................ TGCTGCTGGATCTTGTTTCCGGGCCGGCGTGT 6111087 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCACCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : AATCAAGTTCGACACGACTCGCTCCACGCAGTGGTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGTGGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGCTTGGCCGAGAACGCCCAGCCGATCACCCGCCGGGTATGCAGATCCAGCACCGCGGCCAGGTAGTGCCAACGGCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 6112387-6112654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016214.1 Pseudomonas aeruginosa strain PA121617 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6112387 28 100.0 32 ............................ ATGGGGGCATACACGATCGAGTCACAAATCTT 6112447 28 100.0 32 ............................ TGGTCTACGGCCTGGACGGCCAGTTCGTTCGA 6112507 28 96.4 32 .................T.......... ATTAGAGATGGTGGACCCGGCTCCCGCCGGGC 6112567 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 6112627 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTAGCGCCACGCGGCGAGCATCGACACGCCGCCGTCGAAGACGGTGGACGTAGTAGCAAGACCGCGCCACATCGAAAGCTGAACAGACCACTTCCACCGACTCCTGCTCACTCAACTGGTCTATCAGCGCGTACGATCGAGTTCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAATATCGCTTTCTCCCGCTCTAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCGCTACAGTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTTAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 6122576-6121528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016214.1 Pseudomonas aeruginosa strain PA121617 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6122575 28 100.0 32 ............................ ACCCTCATAGCCCCAACTCCTGATCGATGACC 6122515 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 6122455 28 100.0 32 ............................ CGATGCCGGGTTCGACGGCAGCCCGATACAGA 6122395 28 100.0 32 ............................ ATGTAGCGCCGCATGACTGGGCCGAGTGACGC 6122335 28 100.0 32 ............................ TTCACTAGAGCAGCCAATCAGATTTATGTCTT 6122275 28 100.0 32 ............................ ATGTGGCCAGCATTCACTTCAGGATCCAGGCC 6122215 28 100.0 32 ............................ AAGCGGATTGCGCGCCTGAAGCGCGTCGCATC 6122155 28 100.0 32 ............................ TTGCATCGCACCAGCTTGCCGAATACCCAATC 6122095 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 6122035 28 100.0 32 ............................ CGGAGAACTGGGTCGCGCCCCGCCCGACAGCC 6121975 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 6121915 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 6121855 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 6121795 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 6121735 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 6121675 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 6121615 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 6121555 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //