Array 1 2614449-2611673 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911915.1 Salmonella enterica subsp. enterica serovar Virchow str. SVQ1 chr_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2614448 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 2614387 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 2614326 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 2614265 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 2614204 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 2614143 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 2614082 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 2614021 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 2613960 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 2613899 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 2613838 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 2613777 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 2613716 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 2613655 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 2613594 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 2613533 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 2613472 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 2613411 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 2613350 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 2613289 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 2613228 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 2613167 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 2613106 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 2613045 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 2612984 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 2612923 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 2612862 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 2612801 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 2612740 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 2612679 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 2612618 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 2612557 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 2612496 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 2612434 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 2612373 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 2612312 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 2612251 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 2612190 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 2612129 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 2612068 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 2612007 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 2611946 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 2611885 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2611824 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 2611763 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2611702 29 93.1 0 A...........T................ | A [2611675] ========== ====== ====== ====== ============================= ================================= ================== 46 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2631722-2630718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911915.1 Salmonella enterica subsp. enterica serovar Virchow str. SVQ1 chr_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2631721 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 2631660 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 2631599 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 2631538 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 2631477 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 2631416 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 2631355 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 2631294 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 2631233 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 2631172 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 2631111 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 2631050 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2630989 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2630928 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2630867 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2630806 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2630745 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //