Array 1 118778-118078 **** Predicted by CRISPRDetect 2.4 *** >NZ_UILA01000006.1 Escherichia coli isolate 215A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118777 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 118716 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 118655 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 118594 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 118533 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 118472 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 118411 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 118350 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 118289 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 118228 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 118166 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 118105 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145637-144324 **** Predicted by CRISPRDetect 2.4 *** >NZ_UILA01000006.1 Escherichia coli isolate 215A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145636 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 145575 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 145514 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 145453 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 145392 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 145331 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 145270 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 145209 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 145148 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 145087 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 145026 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 144964 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 144903 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 144841 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 144780 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 144719 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 144658 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 144597 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 144536 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 144475 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 144414 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 144352 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTCAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10539-10686 **** Predicted by CRISPRDetect 2.4 *** >NZ_UILA01000060.1 Escherichia coli isolate 215A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10539 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 10599 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 10659 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //