Array 1 1336784-1336215 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB933471.1 Pectobacterium atrosepticum CFBP 6276 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1336783 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 1336723 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 1336662 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 1336602 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 1336542 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 1336482 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 1336422 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 1336362 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 1336302 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 1336242 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTATCGAGATAAGTCTCTAGCACGGCTCACCTCAAGGGAGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1346884-1347633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB933471.1 Pectobacterium atrosepticum CFBP 6276 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1346884 28 100.0 33 ............................ TGAAATGATCGCTGCACGTCCGCAAGGTCATAA 1346945 28 100.0 32 ............................ TGTTGAAGCTCGATCGATACTGGAAGGTACTT 1347005 28 100.0 32 ............................ GAGGTAAACCCTGATGAGTTGCTGGCTGATTT 1347065 28 100.0 33 ............................ TGATAAGCCAAAGACCACGCATACATGGCCTTA 1347126 28 100.0 33 ............................ GCAGGGTGTTCTGCGTTATCTGCGCGTCAACTA 1347187 28 100.0 32 ............................ TGCATCTTGCGTTGAGTCGAGTTTATTCAGTT 1347247 28 100.0 32 ............................ TTATTGAGTACGCCGCAAAACTAATTAAATAA 1347307 28 100.0 32 ............................ AAACTTCTAATGTCGTTCATAGTGGATAGCGT 1347367 28 100.0 32 ............................ AGAGAAACCGTAAGGAGTCGCCATGTTCCATT 1347427 26 92.9 32 ..........--................ TTGCTGATTGGAGTAAGCACAACGTGCATCAT 1347485 28 96.4 32 ...........C................ AAGCGTAGTACAGAGCAACCCCGAGGCGGACG 1347545 28 96.4 33 ...........C................ ACAGACAGAAGGTGCATAAAAAGGAAGCCTCAC 1347606 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAACCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGGAAAAATATAATATTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGTATGTGAAAAATGATGACCGCAAAAAATATTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTTTCTTTTGGTGCGAATGGAAAATTGCAGATTGGACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //