Array 1 40123-38437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADW010000001.1 Streptococcus agalactiae strain iGBS333 NODE_1_length_317207_cov_115.25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40122 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 40056 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 39990 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 39924 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 39858 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 39792 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 39726 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 39660 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 39594 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 39528 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 39462 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 39396 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 39330 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 39264 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 39198 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 39132 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 39066 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 39000 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 38934 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 38868 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 38802 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 38736 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 38670 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 38604 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 38538 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 38472 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //