Array 1 1944586-1949020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071891.1 Xanthomonas oryzae pv. oryzae strain T7133 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1944586 31 100.0 36 ............................... ATATCAGAATAACCCCGGCGTTATAAATGGTGTGAA 1944653 31 100.0 36 ............................... TGTTGCTGTGGGAGAGACCGCATGAGCGAGAAAACC 1944720 31 100.0 35 ............................... CGCCGACAGATTGCCAACAGTGGCAAACAGCTCGT 1944786 31 100.0 33 ............................... CTTACAGACGACCAGTATGACAGCTTTGCCAAG 1944850 31 100.0 35 ............................... CAGCTCTTGCCCGAGAGTTCGAACACCAGCTGAAC 1944916 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 1944984 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 1945049 31 100.0 34 ............................... CTTGACCTTCAAACCACGGATCAGGCGGTTGTTC 1945114 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 1945179 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 1945244 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 1945309 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 1945373 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 1945438 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 1945505 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 1945570 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 1945638 31 96.8 35 ..............C................ TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 1945704 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 1945770 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 1945834 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 1945899 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 1945966 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 1946032 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 1946098 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 1946166 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 1946232 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 1946297 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 1946362 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 1946428 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 1946494 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 1946559 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 1946625 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 1946691 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 1946756 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 1946822 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 1946888 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 1946955 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 1947021 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 1947086 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 1947152 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 1947219 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 1947286 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 1947350 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 1947414 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 1947479 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 1947545 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 1947610 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 1947677 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 1947743 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 1947810 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 1947876 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 1947940 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1948008 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1948073 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1948138 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1948203 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1948268 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1948334 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1948400 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1948465 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 1948530 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 1948596 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 1948660 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 1948727 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 1948793 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 1948858 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 1948925 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 1948990 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 68 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //