Array 1 18084-18837 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJP01000079.1 Staphylococcus hominis strain RE2.8 RE2.8_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 18084 36 100.0 34 .................................... GAAAGTTATTTCATCATGGTTAGATGTCTCAAGT 18154 36 100.0 36 .................................... GTTAAAATATCGCCATCAATTGAAATTGAATATTTT 18226 36 100.0 34 .................................... GTAAAAAATGAAAAAGGTATTAATAACGAACTTT 18296 36 100.0 37 .................................... CACGAAATTTCAAAATCGAATTATCATGAGAAATTCA 18369 36 100.0 35 .................................... AGAATGTAAATTGCTTCGTTTAAATCTTCCGTAGT 18440 36 100.0 35 .................................... TTTTTTCATCGTGACGCTCTTTTTTTAACCTTTCT 18511 36 97.2 37 ..........A......................... CTTAGATCATCATTCAAACTACGTGTCCCGTCCTCGT G [18535] 18585 36 97.2 37 ................A................... ATGAAAGTTGGTAACTTACCGTCTTTCCCTTCGAAAC 18658 36 94.4 36 ..........A...........C............. AGTGATAACAGGCTTTCGTATTTGTCCATTCCTAAA 18730 36 94.4 36 ...................A..C............. CACTTCTGCCATATCATTGATGAGTTCATCACGTTT 18802 35 86.1 0 ..........A...........C.......-...GT | G [18826] ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.2 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : ATATTTTTCTTCAAATGAATCAGATACATATTTTAAAAATATTAGACCTAACGCTACATTTTTATATTCAGCAGCATCCATACTTCCTCTCAATTTATCGGCAGCCTGCCATAACTTTTCTTCAAAACCTATTGTTGTCATTAATAACACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTGGTCACTAATTTTATCTCTTATTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGAGTAATTATTAACATATTAAATGTAGTATACTCTTAATATAAGGAGAATGATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATTTATAAAAGTATCG # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCCGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAATAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGCTGTTAGTTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 27561-29026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJP01000079.1 Staphylococcus hominis strain RE2.8 RE2.8_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 27561 34 100.0 37 .................................. TTATTTGGTAATTCCATATAATCAGTAATATCAATAT 27632 34 100.0 38 .................................. GCTTTTTGTGTGTGAATAAATCGCTTTTAATTCTGTAT 27704 34 100.0 38 .................................. CCGTCATGGTCTAGCATTTCAATATTAAAATGCTTGAT 27776 34 100.0 36 .................................. ATTTCTTGAATTTTTTCTTTTACTAACATTGTTAAT 27846 34 100.0 38 .................................. TGATATAGCGTTTAGCACCTTTACCAAATCGATACAAT 27918 34 100.0 37 .................................. TCTATGTGTTTTGTTCTCTATAACGTCTATAATGCAT 27989 34 97.1 38 ...............A.................. TTATAATCACCATAGAACGCCATGTTTAAAAGGTTTAT 28061 34 88.2 37 ........C......G.A..T............. TCTTCAGGAATAGGTACTGTAACGTTGATTGTTTGAT TA [28067] 28134 33 91.2 38 .........-.T...G.................. AAATTCCCTATTGTAATAGTTGGTATAAGCATATAAAT 28205 34 97.1 38 ...............G.................. ATATAAATAGTTTTCAAGTTCTATAAGTTCGTAAATAT 28277 34 94.1 39 ...............G....T............. GTATGCTCTTTTGTTGCTTTATTTATAAGACCTTTCAAT 28350 34 97.1 37 ...............G.................. TTTAACATTAATTCTTCTTGTTTTCCTAAATTCATGA 28421 34 97.1 38 ...............A.................. TTGGTAAACCAGTAACATTAATACTTGATACTTTAAAT 28493 34 94.1 36 .................A..G............. TTAATTGATGTTTTCATTGCCATTGCGTCGAAGTAT 28563 34 88.2 39 ........C..T...G.A................ TGATAGTAAAATATAAATTATTTTTTTCATTATTCTGGA 28636 34 100.0 38 .................................. TCTTTATCCCACGCTCTAAATTTAGGTATCATCTCAAT 28708 34 97.1 35 .........C........................ GCATTTTTATTTTCAACGATGAGATAAATAATGAT 28777 34 97.1 38 ........C......................... GATACATGAGCTTACTAGATACCATTAATGGTGAAAAT 28849 34 94.1 39 .T.......C........................ AAACCGAGTATGCTTGCAAACGGAGGTTTCATTTAGGAT 28922 34 82.4 38 .........C.....G.A......A...A...C. TCATCTTAATGATCTCAATTAGCTTGGTTAAAAGGAAA 28994 33 73.5 0 .T.......-T.........T..A.AG....T.T | ========== ====== ====== ====== ================================== ======================================= ================== 21 34 94.7 38 TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Left flank : AGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGTACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGCCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAATTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTCCAAGTGATTTGTCATTATTTTTGACAGCAAATTTTGGCTTTGAAATATTGATGTGATAGGATTTAAAGAGCTATCTAT # Right flank : TTAAAAATATATTAGGTTTGATAAAATATTCTGTAAAAAAAAGAGAAACAAAAAAGGGCTTTTATACAAATAATTCTTTGGTATTAAGTTAGAATTAGAAAACTAATACTAAATATAAATAACAGCGAATGGAACGTATATTATTGAGGAATTGGATGCAGTGTAGTGTAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAGTATTTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATATGGATGAAAGCGAAGTGACAACTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAACAAGATTACCATCTAGAAAATGTAGCTTTTAAAAAAACTGAAGATAAAGTAGATCATTCTGTGAGTTTTTTATGTTAATAAGTCTGAACATGGGGATGTAGTATAAATACGGTTTAGTAGAAACTCGCGCCGAAGCTGTAGATGAGATTGACT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //