Array 1 2053-1801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHX010000043.1 Limosilactobacillus fermentum strain ING8 ING8_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2052 36 100.0 34 .................................... TCAAATGAGTAATGGACATTTCTGTCCACGTAAT 1982 36 100.0 35 .................................... TCACCCGCAACGCCTTGCGACGCTGCCCCCGGTGT 1911 36 100.0 37 .................................... AATCTTTTTCAGTTCGTTTCTTGATTGCAAGCGTTGA 1838 36 86.1 0 ...................T.T.G..G........A | G,T [1804,1806] ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 96.5 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAATGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCGAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGCTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTAAATGAGCACCCGCCTGGTCTAATTGAGGGCATTAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AGAGAGAGCGTGTATCGAAATTCCAGGATTTCGATACACGCTCTCTCTTGATTTAGGGGTCATGAAAGCTCATTGCAGTAGACTAGATATATAATTTATAATTGACACATAGGTTATATTCGAGAGAAAGAAATTAATACCAAATGGAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGCTAAAATTTTCAAATATCAAAACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACATTGGTGTTTGACAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGCGTTCTCAATCACATTTGGATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTTACCTTAACTAGTAAGG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 20748-20420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHX010000001.1 Limosilactobacillus fermentum strain ING8 ING8_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 20747 28 92.9 28 ..............C..........T.. AGTAGCAACATAGTAGTTACCTGCTTTG 20691 28 96.4 32 ..........................C. TGGTATGAGTAGCTTCATCCACACACCACGGA 20631 28 96.4 33 .........................T.. CCACCGTATCATGAAAGCCGACGTATGCCATCA 20570 28 100.0 34 ............................ TTGCAATCTGCCATTTAAATAAAATAGCTTTCTA 20508 28 100.0 33 ............................ TGGCGTTGGCGTTCTCTAATCTTCTCACGTTCG 20447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 32 GGATCACCCTCACGTATGTGGGGAACAC # Left flank : AGTACCAATGACATCATCGTAAATGCTAAACAAGTACCATTTGTTATATTTATCATCTTGATACTGTACTCTGTGGGGCACCAACCATTCACCATAAAGATAATCATGTACATCCTCATCGGTACATTCATAAAATTCAGTAAGCTTCGGAACTAGAACTGAGTTAGCATATTCATAAAATCCTCTCAGTGTGTTGTGTTCATCAAGTCTCTTGTTATGTGAATAGAATGCAAATCTAATTTCTTCATCTTCTTTTATTACTTCGATGCAGCTATTTGCCCCATCTAGCTTTTCTGTCACTGAGAATGGTTCGCCCTTCGCAATCATTTCGAGAAGGCTGTAGTCAATACCCCTCGCTTTCGCCTCGGCTTCTTCTTGTTCTATACGATAAATTTTTGGGAACTTTCGGTAAGTTAACTTCATTTTCAAACTCCTCAACTGAAATTTGGGTACACAAAAAGCACCACGAAATTGATCCAACTTCGCAAACGTGGTGCTTA # Right flank : CCTACGAGAATCCCCGTATATCAATAATTCGTGAGGGGATGTGCGAATAAAATATTCAGTTGTAACACCAATATTCTATTGGCTCATCCTTGCGTAGATACATCTATTGCCTTATTCGCAACCTAAAAAGATTGCTTCAAAGGTCTTGCAGATAATTACCAACGCCATTAATCCCGAGAGATCCGTCCGGGATGGTAGGGTAACACTACCATAATTATTACGCTAAAGCTTGTTGTCCTTTTGTCAGTATGTTCAAAGCTGCATTATGATCACGGATATGATAAGTACCGCAATTAAGGCAAGTCCATTCACGATCTTTAAGCGTTAATTTTTTACTCCTATCATCACTACCCATGACATAGCCACAATCATGGCACATCTGAGTAGTGTTTCTTGGATTAATCGTTACAAATTGCTTGCCATATAATTCAGCTTTATAGGTTAATTTCTGAATAAAAGTTCGCCAGCCTACATCTGATATTGACTTTGCTAAAGCGTGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCTCACGTATGTGGGGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //