Array 1 145473-143795 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892536.1 Salinispora arenicola CNS673 B127DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 145472 37 97.3 38 ..G.................................. ACACCCTTTGCGCCCGGAAAGGAGACCCGCATGGCCAG 145397 37 100.0 35 ..................................... CAGCCCGCAGCGCCCGCGACCGGCTCACCGTCCGA 145325 36 97.3 38 ............-........................ TGGTCGCCGCCGCTCGGCTGTGCGGCCAGGCGCATGTA 145251 37 100.0 38 ..................................... CGTTCGACCATGGCGATCCAGCGGCGGCCGTACTCGTC 145176 37 100.0 36 ..................................... CCGGGACTGCGGCGCGGGTGCGCCGGCCTGGTGGGC 145103 37 100.0 38 ..................................... TCCACGCTCATGGGACCGTACAGCTTCGGTGGGACGTT 145028 37 100.0 40 ..................................... CCACCTACCACCACCTCACACCCGCCCAAAACCCCGACGG 144951 37 100.0 34 ..................................... CCCCGAGAAACAGCGGCGTGGACACCAGCGCCCC 144880 37 100.0 38 ..................................... GCTGACCGGCTGGCAGGGGAAACCTCCGGCGACCAGGT 144805 37 100.0 39 ..................................... CGGCGGCAGGCAGCGCAGCCAACCCCACCGCGAATGCGG 144729 37 100.0 36 ..................................... CACCAACAAGGTGCCGATCGTCGGCACCATCCCGGG 144656 37 100.0 38 ..................................... ATCAGTCCGCAGAATCAGCAACACTCGACACCCTGGAG 144581 37 100.0 38 ..................................... CGCCACAGGTGACACAGCCAGTCATGACCGCCTCCCCG 144506 37 100.0 37 ..................................... AGTTTGGCCTCGACGGCCAGGCCGAGTATCGCGCGGA 144432 37 100.0 37 ..................................... GTTGTCTCTGACGGTGGCGTTGGACCCATCGACAATG 144358 37 97.3 38 ................G.................... CAGGAGGTCGTTCCACCGCCGCCCCTCTGGCACCTGCT 144283 37 100.0 36 ..................................... TGGGGCTCGGTGGGGTGGCTGGAGGTTGGGCATGGC 144210 37 100.0 38 ..................................... TGCTGGCTACCCGCCGCCTGCGCGGCCGGCATCGACGT 144135 37 100.0 38 ..................................... AGCTCGGCGACGGTGTGTGCGATGTCGTCGACCTGGTC 144060 37 100.0 38 ..................................... GGGCCGGCGTCGACCGTACCGGGCCGGTCCCGCCCGAT 143985 37 100.0 41 ..................................... GCCGGGCTGTATCGCGTCGCCTGCTCAGCCGTATTTAGGCA 143907 37 97.3 39 ....T................................ CGGTGACGCACTCATCGGCAACGAGCACTGGGAGCGGAT 143831 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.5 38 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : AGCCTCGTCATCCGCCAGGCCGACGACCTGGCCGCCGAGGTGATCGCGGAACTGGACGCGACGCGCTCGCTTCCCGGGTCGGTCGGAGTCATCGCCCCCCACCGGCACCTCGACGCAGTGCGGGCCGCGCTCGCCGCGGCCGGAGAAGAGCCCGGCGAACTCGACGCCGCGACGAGCAGCCGCGTCACGGTGCTCCCGGCGACGCTGGCCAAGGGCTTGGAGTACGACCATGTCATCGTCGTCGAACCGGCCGACATCGTGGACGCGGAACCGCGCGGGCTGCACCGACTCTACGTCGTGCTCACCCGGGCGGTGACCCGGCTGACGGTGTTGCACACCCGTACGCTGCCCGAAGCCCTGACCCTCACCACTCAGGGCTGAGACCGCGTATACCAGGGGATCAGGTCGAAGCAAAGCACCATCCAATGCTGCAAGGTGTTGTCACACGACGCGCGCGACGTGGTAGGCCTGCACACGCGGCGCTACCTACTCGTCGCCTC # Right flank : CCACCACCGCCACCGCCACCGCCGGTGGCGTCGGGTGTCCACCGGGGGTTCCTAGGTCAACTGAGTGGCAGCCCGAATGGCGTGAATGTGTGCAGTTATCAAGGTTCAAGCTGTAGGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTGACCGGTAGGGGAACGAGGACGCCGGCTGATTTGCGTCCCTCTACTGGCCGACGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACTGTGACGTGGCTGCCGTCGCTGTCGAAGGTCAGGTCTGGGTGTTCGATCAGGGCGCTGGTGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTGCGGCGGCCTCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCGGCAAGGCGCAGTAGGGGCAGGGCCATGATGGCGAGCCAGGTGGCACCGGGCACGCCGTGTTCGGACCCCGGTTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 34652-33830 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892537.1 Salinispora arenicola CNS673 B127DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34651 29 96.6 32 ............................T GGCGGGCGAGTACGGCCCGGCAGTACGGGTTG 34590 29 100.0 32 ............................. CAGCCATCGCTGCCGACCCAACTGCTGGTTGT 34529 29 100.0 32 ............................. GGGTCGTGGTCGACCCCTCAGCCGGTGGTTTC 34468 29 100.0 32 ............................. GACCTCGACACCGGCAACCTCATCACCCCTGG 34407 29 100.0 32 ............................. TACCACGTCGAGGCCATGAGGCCCACCACACA 34346 29 100.0 32 ............................. CCGCGCCCGCCGAGCCTCCAGCCGGGCCTCCA 34285 29 100.0 32 ............................. GTCGGAAGACGGCAGGTCGGCATCACACACCT 34224 29 100.0 32 ............................. ACGTCCTCGCAGGTCAGGTTCGGCCCGGTGAC 34163 29 100.0 32 ............................. GAGGCGTGGCGCGATCCGGACTGGGGGGCGCT 34102 29 100.0 32 ............................. GGCACCTACCACCGCACATAGCCCCGCCCGGC 34041 29 100.0 32 ............................. TGATAGGTATGCCGGTCAACTGTTAGGTCCAA 33980 29 100.0 32 ............................. GCAGCCCGGATAGCCCGAAGCTGGGCAGGAGT 33919 29 96.6 32 ............................G AGGGCGTCACCTGGCAGACCATGCCGGCCCGG 33858 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Left flank : TCTGGGACGAAGGCGGTCTCGAGTTGGCCGGCGGCCGGAACTACGGCGGATACGTGGACTTCTGATGACCGTTATCATCCTCACCGCGTGCCCCGAAGGACTCCGCGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTGGGACACGTGAACAGTCGGATCCGGCACCGGCTCTGGGCGAAGGTCGTCGACATGGCCGGACCCGGCCGGGCACTGCTGGTGTATCAGCAGCCCGGCGAGCAGCGACTGTCTTTCACGGTGCACGACCATCACTGGGAACCGGTGGACCATGACGGGATCACGTTGATGCGCCGACCGACGCAACGCACGTCGCACAACCCCGCGCTACCCGCCGGATGGAGCAAAGCATCCAAACGCCGCAGGTTCGGCCGTCGGACCCCACAAGCACCTAACGAAGTAGCGACGAGCCTGAACCAAAGTGAAGGAAAAAACAGTAGTTGATCTTCAAAGCCCCAGCTCAAGTAGT # Right flank : ATCATGCTCGGCCAGCGGGCACCTGCTCGACGACTATGGCGCGTTCATGCCGCTGCGCTCCTGTCCCACCACGCGGACCTCGACGCTCGTACGCGCCGCCTCGCAGGCCAGCGGAGACATGCACGAGACCCACCTACCCGGCCCGCTGGCCGACGACGGGGAGGCATGGACCGCGCTGGTGGCGCTGCTGCTGCCGGACGTGGCCCGCCTGGACATCGACCGCCCCGACGGCCCGGTGCAGTGGCTCGTCCACCCGGACGGTTCGTGGGCGTACCACGACATCTCCACACACACGGTGGAACAGGGCGGACCGCGCCGGCTGTGGACCGAGGTGGAGGACCTCTACAGCCGGTGGACCGCGCACGGCAAGCCCACCCGCTCGCACATCGGTGTGACCATCAGCCCCACCGGGGAGCGGGTCTGGCTCACCGATCCCACAGAAATCATCGGCTGACACGATCCGCGAATGGTGCGGGGTGAGCGGTTCGCGCATTGCCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90615-89367 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892531.1 Salinispora arenicola CNS673 B127DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 90614 28 100.0 34 ............................ CGTCAGCGTGACCTGATTCGCCATGTCAGCTGAC 90552 28 100.0 33 ............................ CGGCCGCCAGGTGCTCTCACCGGAGCAGATCCG 90491 28 100.0 33 ............................ CTCCTCATCGCGCAGCCGCATCCACTCCTGGAT 90430 28 100.0 33 ............................ CTCGCCGCCGACCCGAGCGCGGCGGTGGAGCTT 90369 28 100.0 33 ............................ GAAGGCCGCGATCCGCGAGCACAAGGAGGCCCG 90308 28 100.0 33 ............................ GTGCGGTCAGTGCTCACGGCTACCTCCGGTCGG 90247 28 100.0 33 ............................ CGAGGTGTGCAGGCCGCGGGCCTCGACGAGGGC 90186 28 96.4 33 .........A.................. GGTGAATGAATGTTGACAGGCCGCCCCCTCAAA 90125 28 100.0 33 ............................ GGATCGCGTCACGCAGTCGGTCGTTCGGCATCG 90064 28 100.0 33 ............................ ATAGACCTTGTTGCGGGCGTTGGCGTCGATCGC 90003 28 100.0 33 ............................ CGCGACGAAGGCCAGCACCAGCCAGCCAAGAAT 89942 28 100.0 33 ............................ CTCATGGCCGACCTGACCGGCGTGTGGAAAGAG 89881 28 100.0 33 ............................ CGCGCCGAGGTGCTCGCCCAGGTCGAACCAGAC 89820 28 96.4 33 ........T................... GGAGGCCCGACTTCGCGTCGACCAAGTCGACGC 89759 28 100.0 33 ............................ CCCGGCGCCCTTCGCGGCGGTCCTCAGATACTC 89698 28 100.0 33 ............................ CGCGCCGAGGCCGGCACCGACGTAGCCGACCTC 89637 27 96.4 33 .....................-...... ACGGTCCGCCGGATAGCCACCACGCGGGGTGCT 89577 28 100.0 33 ............................ GAACCCGAACGGGTCGGCTCTGTCCTTCACTTC 89516 28 100.0 33 ............................ GCGCCGGCGCGTGGAGTACGCCCGCGCGCTGGA 89455 28 100.0 33 ............................ GTAGCTCCTTGGCCGTCCAGATCCGGTCCTTGT 89394 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 99.5 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : GAGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGGAGTCGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCACCTCACCTGCAGTTCGGCCAGCCGCCGCATGATCGACCGTTGCGAGGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGATCAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACTGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACACGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTGCAGGAAGGACGATCTTGCAGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CAAGACGAACGAAGCGATGCCAGCAGTGGACTTCGCCCTTAACTGTGGTTCGGCAGGGCAAGCGCATCTCACCGCGAGTCGACCGCGGTCGACGCCGGCTCAAGCACTTCCGGAGGGCTGTCACTGTGGCAGAGCCGGCACGCCCGGTCCGTCAAGGCTGATCGTCGCTGCTGGATCCACGGCGAGCGCCTGGAAGATCTCGGTGGGTATGAGCACGTCGGCCGCGAAGTGCACTCCTACGGGCGTCTCGCCCGCGAGGACGGCGGTCGCTGCTGCAGTGGCCAGGAATCCGCTGAGTTCGTAGGAGTCCTCGCAGGCCAGCGACAGGACCCGCGGCGGCGTCTCGGCGTCGTTCCCGCCCCAGAGGTGAAACTCCTGGCCATACCACGTGCCGTGGCGCCGTACGTCCTCGGCCGCCGCGTTGACGACCTCGGATGTGTCCGTGTCGTCGAGGGCCCAGGATAGTGCCAGTTGCTCGGGAAGCCGGCCGCCGCCGAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //