Array 1 264503-266178 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDH01000025.1 Shigella sonnei strain ECH+19 140-HLP220_NODE_2.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264503 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 264564 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 264625 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 264686 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 264747 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 264808 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 264869 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 264930 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 264991 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 265052 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 265113 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 265174 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 265235 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 265296 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 265357 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 265418 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 265479 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 265540 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 265601 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 265662 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 265723 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 265784 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 265845 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 265906 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 265967 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 266028 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 266089 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 266150 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 282986-283623 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDH01000025.1 Shigella sonnei strain ECH+19 140-HLP220_NODE_2.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 282986 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 283047 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 283108 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 283169 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 283230 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 283291 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 283351 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 283412 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 283473 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 283534 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 283595 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //