Array 1 1849882-1851559 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKX01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03401 2014LSAL03401_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1849882 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1849943 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1850004 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1850065 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1850126 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1850187 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1850248 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1850309 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1850370 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1850431 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1850492 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1850553 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1850614 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1850676 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1850737 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1850798 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1850859 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1850920 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1850982 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1851043 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1851104 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1851166 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1851227 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1851288 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1851349 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1851410 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1851471 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1851532 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1867818-1869799 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKX01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03401 2014LSAL03401_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1867818 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1867879 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1867940 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1868001 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1868062 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1868123 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1868184 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1868245 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1868306 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1868367 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1868428 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1868489 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1868550 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1868611 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1868672 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1868733 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1868794 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1868855 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1868916 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1868977 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1869038 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1869099 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1869160 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1869221 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1869282 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1869343 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1869404 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1869465 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1869526 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1869587 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1869648 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1869709 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1869770 29 96.6 0 A............................ | A [1869796] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //