Array 1 70230-69336 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FEBQ01000012.1 Streptococcus pneumoniae strain 2842STDY5643923, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     70229	    36	 100.0	    30	....................................	GATAAATTGCTAACTGATTTTTTTCCGTAG	
     70163	    36	 100.0	    30	....................................	ACAATTCAATTCTTACAGCTTGGCCTTTAA	
     70097	    36	 100.0	    30	....................................	CTTTAACACCTAAATCATATCCCAAATCAC	
     70031	    36	 100.0	    30	....................................	GGTTTGAGAAGACTGTTACAGAGGAAGGTG	
     69965	    36	 100.0	    30	....................................	CTTCCTCCTTCCTTTTTCGATTGTGTCTCT	
     69899	    36	 100.0	    30	....................................	TGGAAGTTTTCTTGTCCTTGCTTCCTCGTG	
     69833	    36	 100.0	    30	....................................	GGCCTCCCCTATAGCTTAGCCGTTGTATGT	
     69767	    36	 100.0	    30	....................................	TATGTGAAACGAGTGCTTGAACTAGGGAAG	
     69701	    36	 100.0	    30	....................................	ATATCCTCCTGGAACTGGATGTGGGTATTA	
     69635	    36	 100.0	    30	....................................	TTTGTTTCTGATCGTTCAAAATGCGTGTTT	
     69569	    36	 100.0	    30	....................................	CATCCTCATCGTGACAAGGTGCGCATCATC	
     69503	    36	 100.0	    30	....................................	GTTGAAGATGAGAAAGGGGCGCAGAATGGT	
     69437	    36	 100.0	    30	....................................	AGATGCTGCTAAATGTAAGGCTCAGCTTGA	
     69371	    36	  91.7	     0	.................C.......G.....G....	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.4	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATGCCTGATGAACAAGAATTTTTAATCTCTTTGAGAAAGATTGGACCGTATTTATTTAGTTCAGAAATTCTTCATATGAGTTTATCTATAGAGGACCAAGTAGCATTAAAGATTGTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTAAGGCAGTCAATCCAATGTTATTAAAATATTTGAAATAATAGTATTGACGAGTGGGATTTAAGAATTTATAATATTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG
# Right flank :  AGCCATTCAACTTATTGATTTACTCTTATTGTGATATATTCATAATAAAAACCGCTCAGCCGAGCGGTTTTCGTTGATTCTATTCTTTCCTTTTACAATACCCATGTTCGGATGGCATGGGCAACGCCGGATTCATCGTTAGATTTAGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCATTTTCCATGACAACGGGGTTGCCAACGACTTCTAGCATGGCACGGTCATTTTCTTCGTCTCCGATTGCCATGGTTTCATCCGTGGTCAATCCGAGTTTTTCTGCTAAGTGAGTAATAGCTGACCCTTTATCCACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCTCAGGCTCATCGATGAACATACATTTGACAATTTCTTTGTCAGCCATTTCTTCAGGCGTACGGTAGAAGATAGGCATGCT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//