Array 1 7097-9218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000045.1 Nostoc foliaceum FACHB-393 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 7097 37 100.0 34 ..................................... AAATCTTTACAATTCTGAGAATCTTCAAGTATTT 7168 37 100.0 34 ..................................... AAATTAAAATCAGCAAATAGCTTTAAATCCAGTC 7239 37 100.0 32 ..................................... TGATTAGTATCATTTAGATAATTAGCAGCAAG 7308 37 100.0 33 ..................................... AGCAGTTGTAGCTGTGCTTTGTGCCCTGTTTGC 7378 37 100.0 36 ..................................... CATTTCACTTGCTCCGGCGGCCGATGGGAGTGGTGG 7451 37 100.0 36 ..................................... GAGTTGCTTTTTCAAGTTGGCTTTTTTCATTGTCAC 7524 37 100.0 37 ..................................... AAAAAAGACGATTTAGGTTGGTACAATCAATTGCGAC 7598 37 100.0 33 ..................................... GTAAATCTTGGGAGGAATGGGACGCGCTGCTAA 7668 37 100.0 36 ..................................... AGCTGAATCTGGAGCCATGCCTTTTACCCATCGACT 7741 37 100.0 33 ..................................... CTAAAGCGGCGATATCAGATGAAGATACCCCCG 7811 37 100.0 34 ..................................... TGATCTCTTGGAAATCATGACTAGATAAAAAAAC 7882 37 100.0 31 ..................................... GATTTCTTCCTGAGTCATAATTCCTATTTTG 7950 37 100.0 38 ..................................... CCAACATTTGCTTCTAGCTTGCTGATCGCAGATGCAAA 8025 37 100.0 35 ..................................... ACCGACGCATTATATGGTTTTGTAGCCAGCACGAG 8097 37 100.0 35 ..................................... ATTTCGCTTGCTCCTGCCACTGAGGGAAGCGGCGG 8169 37 100.0 49 ..................................... TTAATGGAAGTTAAAAAATGTAGTTGAAGAAATGGCAGAGGAAAGTTAC 8255 37 100.0 32 ..................................... TTAATGGAAGTGCTGCCTTCAACACCTCCCGA 8324 37 100.0 32 ..................................... GGACTTTTCTAACATGGCGCGGAGCCTCCAAA 8393 37 100.0 33 ..................................... GATTGTCCTAGTTTGTGATTTGTTCCTAAAAAA 8463 37 100.0 33 ..................................... TTTTGGCATACTTTGACCGCATCAACAGACGTT 8533 37 100.0 36 ..................................... CAACGGATGTGCAATGCACACTTTTTGCGTATGCAA 8606 37 100.0 34 ..................................... ACTTTACCAAGGGTTTAAAGCACTAAAGGGATTA 8677 37 100.0 36 ..................................... GATAAAGAAATGTACGAGTATCTACAATCACGGGCT 8750 37 100.0 37 ..................................... CAGGAATCTCCCCGTCAACTTCAGGAGTAGGAGTAGG 8824 37 100.0 35 ..................................... GTTCATCTGGTAGCTGCACTGATTCACCTAAAATA 8896 37 100.0 34 ..................................... CAGAGCAATCATTGCGATCGCAGCAAACTGGGGT 8967 37 100.0 34 ..................................... AAACCAGATAGAAGCATCGATGACCAAAGAATAG 9038 37 100.0 34 ..................................... AGCTTATGTAGTTTGGAACCCTGAGAAACAGGAA 9109 37 100.0 36 ..................................... CGACTTAATATTACTGGTGGTGCTAATAGTATCAAG 9182 37 78.4 0 ............................CCC.AGCTA | ========== ====== ====== ====== ===================================== ================================================= ================== 30 37 99.3 35 GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Left flank : GCACTGGTGATAATGATTAAGAAATTGCTGGTTAAGTTTCCGCAGTGGAAGATTGCGATTGTGGATGGGATGCTGGTGAAATGGGATGAGTAGCGATGCCTACGGCAACCCTTTCAGGAAAAGCCCTTTAATCACTAGGGACTTCTAGTACAGTAATCGATTTTGAGAGTAGCGTAACTTCGGAATCAGAAGCTATATCTATTTTTATATTATTATGATATGAAAAGTTAATTGGCTCACTGGTGAACACAACAAGATTATTTCCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAACCAAAAATGGGAATAGGGGTTTCAAATGTGCTTAGTGCAAGAGTTTTAGCCAAAATAGTTACTTAAGCACCCGCGCACCTTACACAGACTGGGTTTTAGCTATTCCCTTACTATTCAATCTAAATTCTCCATGCTATGATTAACCTATCCGCGCATCGGAACCTTGAAAACCTAATAAATACAGCTTTTTGGGCTTTTGAC # Right flank : ATCTAATTGGTATACAAAGCAGGTAAGCTGAGGAAAGCACCTAGCAGCAGTAAAAAATTAGTGATAGTAAAGTTGCCTCGCCATCGCCCAGAACGAAAATTCAGTAATATCAAACGAATAGTATTAGAATGTTCACTCATCGAGTGCGTGCATTGTGGGGCAGAATTAGCGCTACGCAGACCAAGACACATGCGTAAAACGATTCAAACAATGGATGGTGTAGTATTTGTGGCAGGCAAGAGTAAAGAATGTACCAATTCCAGTTGTACACATTTTGGTAAACATTACTATGCTACTGGCGTATTAAAATACAGCTTACCTTACAGTACATACGGGCTAGACGTGCTGGCATTTATAGGTTGGCAGCATGAACATGAGCATCAACAGTTGGCAGAAATTCGACGCTTATTAAACCACCGTGGTGTTGAAATTAACGAAAGCAATGTAGGTAAGCTATATCGTCAATTTCTGGCACTATTGGGTGGAACGATGGCACATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 11027-13823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000045.1 Nostoc foliaceum FACHB-393 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 11027 37 78.4 35 AA.......AT..C..GGG.................. ACCACTCCGATAGTACGTAAATCACTTAGCTAGTG C,AG [11029,11035] 11102 37 100.0 34 ..................................... TACTGATATGAAAGGTTTTCCCCCGTTTCTAATA 11173 37 100.0 35 ..................................... TTGTAGCTTTTGTATCGTCTCCTCCCACGGTGGAA 11245 37 100.0 31 ..................................... TAGTGATTCACGAGGTGGGAACCACTTAGAG 11313 37 100.0 36 ..................................... TAATGTGTCTCTGCTAATTCCTAATCTCTCCCTAGC 11386 37 100.0 35 ..................................... ACAAACATACTAAGAATTCCAAACAGAGTAGTCAT 11458 37 100.0 45 ..................................... ATGATAAATTAGCAAAAGAGAACAATCAGGATTCAACCATGTACG 11540 37 100.0 33 ..................................... ATGATAAATTAGCTCCTTTCATGGCTGAAACAT 11610 37 100.0 37 ..................................... AGTGATTTTGCATCCCTTGTTTCTAGATGCAGTTCGG 11684 37 100.0 32 ..................................... AGCCCATCTATTGCCGGGCCTGACATGCGGGA 11753 37 100.0 35 ..................................... CACCGTTTCCGGTTCTGCGCTTTTGAGAGGTTTCG 11825 37 100.0 33 ..................................... CTATACTGGCAATCGGGGGCGATCGCTAATTGA 11895 37 100.0 32 ..................................... GATAGCTCCGTATTTAGCAGCTTCAAGTCCAA 11964 37 100.0 36 ..................................... GAGATTTATCAGAATAAGCAGAGCAAAGCTCAGTAC 12037 37 100.0 34 ..................................... GTAATGGTAAGCGTATCTCGCATATAAGCGAGGC 12108 37 100.0 33 ..................................... GCATTCTTTAGTAGCTACCATACTGCACCCCTG 12178 37 100.0 37 ..................................... ACAAGCCTAATGTACACCTTTTGTGTTGTGGTTGCAT 12252 37 100.0 34 ..................................... AGAAGAGTCGCTGTTTTTTGCTTGCGCTAAACCT 12323 37 100.0 35 ..................................... AATTGGTGGAAGTTTCGGAAATAGAAAGTTTCAAA 12395 37 100.0 34 ..................................... TTAAAAAATGTAGTTGAAGAAATGGCAGAGGAAA 12466 37 100.0 34 ..................................... AGCCTGTTGAGGCGGCTAGCCTGTTACGCTCTAA 12537 37 100.0 40 ..................................... GAGAAGCCCCAACTATTTAATATCGAGTGGGTAAGCGATA 12614 37 100.0 35 ..................................... ACTATTATCGTGTGCTGGATTTTTGAGTTGCGGAC 12686 37 100.0 35 ..................................... ATATTGGACAGCGATCGCCCTTCTCTATCTGCAAG 12758 37 100.0 34 ..................................... AGGAAGTTACCAGAGACTACTTTATCCCATACCA 12829 37 100.0 35 ..................................... ATCCAACAAATATTTCACCCCATCTGGATTAAATC 12901 37 100.0 33 ..................................... CATTATGTACTACTTGTAAGCTACACCTTGAAG 12971 37 100.0 35 ..................................... AAACCAGGAAATTCTACAATGCTTTTACCTGCTAA 13043 37 100.0 35 ..................................... ATTCTTTCTTTCAAATCTTAGGATTCGTAACCAAA 13115 37 100.0 35 ..................................... AGAACGACCGCATGAGTTGTAGAGTGTGCGGTAAG 13187 37 100.0 35 ..................................... ATCGATGGTTTGAAGATGATCGGTAACAACGACAA 13259 37 100.0 34 ..................................... AACTTTACCCTAGACTATTCTGATCGCTATTCCA 13330 37 100.0 34 ..................................... AAAAGCTTGCACTGGTAGCAATTAGCCAGATGGC 13401 37 100.0 34 ..................................... GCAGACTGCCCAGCCGATCGCCCTACATTACTAA 13472 37 100.0 35 ..................................... CTTGCCCTTGATTCTCAGTATCCAGTGATCAATAC 13544 37 100.0 37 ..................................... TTGCAGCTTGCCGAAAGTGCATTTACACTACTGCATG 13618 37 100.0 34 ..................................... TTTGTGAATACTTCAATGGCAGGTTAAACCCTGC 13689 37 100.0 61 ..................................... AGGCGGACTGGTGTAGTCCCTGTGGCGGACACCACGTTACAATTTCAGTTACTGCATTGAA 13787 37 81.1 0 ............C.C.T..GT...C.......A.... | ========== ====== ====== ====== ===================================== ============================================================= ================== 39 37 99.0 36 GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Left flank : TACTAGCAACTTATCTTTGACAAGCCTTAAAGTTCGATGCGAGATGGAAGAATTATTACAGCAGTTTGTACCTGACCCTAAACAAAATCCGGCACAGTTTGCTCTACTGAAAAAGTTACAACGACTATGGGATAAATACGGTACTAACTTATTGCACTGCTATGATATCCCTGGCTTGCCGCCAGATAACCTGAAAATGGAAGCTATGTTCAGCAATTTACGTCGTCATCAAAGGCGGATTAGTGGGCGCAAATCAACTGCCGAATTACGTGATTTTGGGCAATATCAAGTTCTATTCCTAGCCGAAAGTGAAGAAATGTTACTGGCACAAATTCGGGAAGTACCTGTAGCAGAATACAACACTCAACGTCGCAGATTAGCAATGGGTGAAGCACCCCGTCAACAAAAACATCGCCTTCATCGTCATTCAGTTCGCACAATACAAGCTTTGGTCGATCAACATACGGAACTTCTTACTGTGCTTGAGTCTCAAGCTCTTG # Right flank : CATAATGTAGAAGTTTAACTCTTGGTATTGACATCATACAACTGGCATAAGGTAAAGAGTTTTTGTTTTAAGCGATCGCGTAGACTCTCAGGAGACACAATCACGCAATCCTCCCAGTAGCGTGCAACTTCTCGAATCAGCCAAAAGTCGTTGACAACACGTCGCACCACTTGGCGTACATCCCCAATTGTTTCGTCCTCTAAGTCATCTTCCCTGCGTTGATAGGACTTTACCATCCAGCCTCGAAAGTGTAAATACACTTTTATGTGATCCAGCCCATCTCGCCATTCACCGCTTGCAGGTACAATTGAGCGGATTTTATCAAAAATTAAATTGCGGTTGTGCCAAAGTTCTGGCAAATCAGGAATCAAATTTTCTACATCCTCGGTTTCTTCACACCAAATCATTAAATAAAAGCGTTTATCAAAGAAGCGTGGTTCTGCATAACGTACCGTGTACTGTAGTTCTTGCCCTTGAGAATTTTCATAAAGCAGGTAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 25124-25302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000045.1 Nostoc foliaceum FACHB-393 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 25124 37 100.0 34 ..................................... TAAAATCTGGCACTGTCTCTACTAATGAATCTAA 25195 37 100.0 34 ..................................... CTGTTCTTGCATTCCTGCCTGGGTTCAATTCTTG 25266 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Left flank : AGAAGTAGCGATGAATGTGATTGTATCCTATGATATTTCTGAAGATAAACGCCGCACCAAAATTCACAAAATCCTCAAGTCCTATGGACAGTGGGTACAGTATAGTGTGTTTGAATGCTATCTGACTGATACTCAATATGCAAGGTTGCGATCACGCTTGAACAAGTTAATCAAGCCTGAAAGCGATAGTATACTCTTTTACTCTTTATGTGCTTGCTGTGTAGGTAAAGTTGAACGTATTGGCGGAGAAAAAATTCGTGATGACACTGTTTTCTTTGCTGAATGCGCGGATGGGTAGATGTTGAAAACAAGATTGGTGAAAGGGTGCTTCCAGTTCAACTGGTACAAGAGTTTTTGCGAAAATAGCTGTTCAAATATCCGCGCACCTTATACAGACTCTATTTCGCTTAAGATTAACGTTAATTTTCTATGTTATGATTATCTCATCTGCGCTATTGGACCTTGAAAACCAAATACAGACTACATTTTAAGCAGTCTCA # Right flank : CTCAATGTTAAAGTTGATAGTGGCAGATTCTGGGAGATTAATAATGGCGACAACTAAATATCGAGCTTATACAAACGTGCCAAAGCCAAGTCCAAAACTGGTAGAAATAATAAAGCAATCTGGGACGACTTTATATTTAGATCCGGGGGCAATAGTTCAACTGATAGATCCAGATACATCAGTACTACAAATAATTGTAGGTAGACAAGAAAGTATATTTAAATTGACGGATATTCGTGCCATTATCGCAACAGAAGCAGAAATTAAATCATCAGCGCTAACAAAAATTCTGCGATGGCGTATTCCAGTAATTTTATTTTCTCAATCTGGCGAATTCTTGGGAAGGATTGAACCAGATTACAAAATCAGGGCAGATATCATGCAGTCCCAAGCTCTGATGACTGACGCGATGAGAGTTGAGGTTATGCAAGGTGCAACCTGGGGTCGTCTCCGTCGCCTCCGGCGGTTTTTACAACGCTCTGGACGTGATGGTGCTGTAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 61705-63721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000005.1 Nostoc foliaceum FACHB-393 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 61705 37 100.0 34 ..................................... CTCGCGCGGCTTGTTGCTGTGCTTGTTCCCTGAA 61776 37 100.0 33 ..................................... ATAAGTCGGTAACAAGCTACTCTGCAAAGAAAG 61846 37 100.0 34 ..................................... AAAAGCGGCTAACTTTTTAACTTCTACATAATTC 61917 37 100.0 35 ..................................... CATTAATTTTAGTATTAACAACGAAGATATTAAAT 61989 37 100.0 35 ..................................... AAATGTGCGTACTTTACCCCCACGGATTACCTTAG 62061 37 100.0 36 ..................................... AACTAAACCCCGGTGTAAACTATCCAGCGCATATTG 62134 37 100.0 36 ..................................... TACCCAAAGAGTCAACTAAGGTTAGAATAGTAGATA 62207 37 100.0 35 ..................................... ATAGTGATCGCTTGGATAACTTACACTCTGAGTTT 62279 37 100.0 39 ..................................... AATGCTAATCCTTGGGCGTACCGTGGTAGGTGCTTCTGA 62355 37 100.0 35 ..................................... TAATCGGATCATTTGCCCGGCAGCCCCCTGATAAC 62427 37 100.0 34 ..................................... TACCAACTTCAAAGGGCACAACATAAAGGATATT 62498 37 100.0 34 ..................................... GGTGAAGCGATTAAGAATACTTTGATGTATCCCA 62569 37 100.0 36 ..................................... CACCATTAGGGTCAACCTCAGTACGGAACACATAAA 62642 37 100.0 38 ..................................... TTTCTGCACAGTCTAGAGAACAAACACAGCATTCTGAA 62717 37 100.0 35 ..................................... TTACACTGGTGAAGCCTGTAACTACTTATTTTATC 62789 37 100.0 36 ..................................... AAAGCCGCGATCGCTGCTGAAAACGCCCTGAGAAAA 62862 37 100.0 35 ..................................... TAGTGATTCACGAGGTGGCAACCACCTTGAGACTG 62934 37 100.0 35 ..................................... ATCCAAAGGGCGGTGCTTAAGTTCGCAGTAGAACG 63006 37 100.0 35 ..................................... TATCTTAGTAATGACAAAGTGAGATACGTTCTAGA 63078 37 100.0 37 ..................................... ATTTTAGAATCTTTGGAATTTACTCCAGTACCCGTAA 63152 37 100.0 45 ..................................... AATGCAGAGAGATTGCCACAAGCGACAGCCAGAAGCATTAGACCA 63234 37 100.0 37 ..................................... AATGCAGAGAGAAGGGGCTAGTTTAGAAGAAATAATC 63308 37 100.0 45 ..................................... AGGATTGCAGCACTAAGTGTGGTGAGTGGTGGTGACATTACTTGT 63390 37 100.0 43 ..................................... AGGATTGCAGCTTATCTGGCACTAGTTCATTAGGATGCGGCGA 63470 37 100.0 37 ..................................... AGTTTGGCTCAAAGCAATAATGCAGCGCTTGGGCTTG 63544 37 100.0 34 ..................................... CTCCATTAGCTTGTCCGTTAGATGATGATTTAAG 63615 37 100.0 33 ..................................... GTAGCAGGCTCAGTGCTATCGAGAGTACAACTT 63685 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 28 37 100.0 36 ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTTTCTCTGCTGTTCATAGAATTAACAGACCTCATACGCAATTCTTCGCTGGAAAGGGGAACGAAAGAAGTTCTGATTAAAACAGCTTTTAGGGAGTTTGCTTGTGCAATAACAGACTTTGAAGACGTTACCAAATAAAGTTGGTTATGGCGGTGCTGATATTGCTTAGGCGTAACCCAACCCAGGCATCGCCCTGAAGTCAGCTAACCTAATCGAGTAGGATATCTATTAAGTAAGCAGCTTTCCAATCAGATTAGTTTTTTCGCTGAATGCGCGGATTGGTAGGTGTTGGGGAAGGGGTGACTAAAAAAATGGCTGAATTACCTTATATACAAGAACTTGAGAGCGTTAGCATTTCTAAACCATTCGCGCACCTTATGGGGACTTGTTTTCAGCCATTTGCCTCTAGCCAACTCACAACTCCTCATGTTATGATTTCTGCATTCGCGCAACCGAACCTTGAAAACCAAATAAAGCAAGACTTTCAGAAGCCAGCT # Right flank : CCCGGTGTAATGTCTGGCACATCCTTCTTAAGCTGACAAAATGTTTGGTATGATTAAGAAGTGTAAAGTTATGTTACACTCAGTTACGAGTCAGGAGTCGAGCGCAACCGACATCTGAACAACAGGCCAATTTATCAAACATTCCCATAGAACTCAGAAAATGACTCTATCGATTCGTCCCGATCTAACTTCTGCCGATCAGGTACTGTCATCTTTAGCGACTGGGCAACAGCAAACTGTAACAGAAGCTCAAATGATGCAGGCTGTGCGTACTTTGCTGATTGGATTAGGAGAAGATCCAGACCGCGAAGGACTAAAAGATACTCCGAAAAGGGTGATGAAAGCCTTACAGTTTCTCACAAAAGGGTATCATGAATCATTGGATGAACTGCTAAACGGAGCAGTATTTACAGAAAATGCCAATGAAATGGTATTAGTACGGGACATCGATATTTTCAGTTCCTGCGAACATCATATTCTGCCAATTATTGGTCGTGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 6705-7103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000056.1 Nostoc foliaceum FACHB-393 contig56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6705 37 100.0 39 ..................................... AAGTTTCATTAATAAAGCTGAATTTCTCGCATACTCCGA 6781 37 100.0 36 ..................................... GACTACTGATACCTAACTATTTCTAAAATGACCAAA 6854 37 100.0 34 ..................................... CAGATGTGGACAATCGGCGAAAAGCAAAGCTTAG 6925 37 100.0 32 ..................................... GCTGAGTAGCACGACTGTATCTTATGCAAAAA 6994 37 97.3 36 ..................A.................. GGGTAGCCGCTTTTTCAGCCCGAATTGCTTTATTAA 7067 37 94.6 0 ........................A...........A | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.6 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : TTAGCGATCGCGGCTTATCATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGATAATAAAATAAGAAAATTCAACAGCGCCGCAGTTCATGCTTGTTATAAGCCTCTGTGCTGTGTAAATTTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTTATTTTTTGGCATGGTAAAGCGGGGGCGATTTCCCTGGGACTCCTGCCAAAACTTTAAATCACTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGAAGGGCGGTTTTGGGAGACGTGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGGGTTTGAAGCGCAGA # Right flank : AAATATATACCATCTTGTTCTTAAATTAGCTCTTTCTCGGTATTAGCATTACTTTAAAAGCTTTATCGACTTTTTGTGACTGGTTCTCAATTTCGATAACAAGCTGACAAGTTTTTAGGTGGGTTGAAAGGATAGAGCAACAGATTCTTTGTTTGGAGGGAATGACCTCTGGCTCTATTAGTGAATAATTAATCCGGTTATAAGTTAGATGCACAAGGATAATACTGCCATACTTATAAATATATAGCAGTATATGAATGTGACAGCTAATATGTTAACAGTGACATCAATCTGTTAACAGTGACAAATAATTAGTTAATGTACAGGTAACGAGCGCGGAGGGATTTGAACCCCCGACCCACAGAACCGGAATCTGTTGCTCTATCCACTGAGCTACGCGCCCTTAGTCTTACACATTATAGCACGTCTGTGATAAAATTTGCAGCCTAGAAAAACTTGGTTTTTGGGTTAAAGATAATTAGCTGGGTCTACGGGTGTAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 194937-196281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000007.1 Nostoc foliaceum FACHB-393 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 194937 37 100.0 34 ..................................... TTGGCAATCATAACTTTCTGTGCAATAATTGGTT 195008 37 100.0 37 ..................................... AGTGATTTCCAATTTCTAGCATTAATAAAAACTCCAA 195082 37 100.0 35 ..................................... CCACTACTCCAAAATGCATCCTTGGTACTTACTTT 195154 37 100.0 35 ..................................... GCGCTCAATTTGCCTTAGTCGCTTCTGGCAACCAC 195226 37 100.0 34 ..................................... CCCAAGTTCGTGATTGAAAACAAATGGAAGTTTG 195297 37 100.0 38 ..................................... TTAGTAGCGGATTAATTAAAAGCTGGCAGTTGGATACA 195372 37 100.0 35 ..................................... GAATATAAGAACTCTAAAGATATTAGTCTTTTTGA 195444 37 100.0 40 ..................................... CCATAGGGCAAATCGCATAAAATCATATCTATTGATTCAT 195521 37 100.0 34 ..................................... TGATTTTCACTATTTTTAGGCGTTAGTTTTTTTC 195592 37 100.0 36 ..................................... ACTTGAAGATGTCGGTCGGCTATCAGGCTCCAAATA 195665 37 100.0 34 ..................................... ACAGAGTACAGGCAAATTCACTGCCAATACACAA 195736 37 100.0 34 ..................................... TGAAGCGCAAGAAAGAGGATTATCAAAAGAAGAA 195807 37 100.0 35 ..................................... GGAGCAGTAGAAACGTAAACAAAGACATCAGAGGG 195879 37 100.0 38 ..................................... GCACGATCCGCGCTACTTTACCAAAGAGGAGGCACGAG 195954 37 100.0 34 ..................................... ATCCTACGGTGTCATCCCTCCCAGTAGGGTATGT 196025 37 100.0 34 ..................................... ACGTCTTCGGTAGACCAACCAGCCATGTATACAG 196096 37 100.0 36 ..................................... TCTTTCCCTGGAGAGACGCCACTTTACTACACAGCA 196169 37 100.0 39 ..................................... AGACGGAAAGATAACTTATAACTTCCTACTTGACCCTGA 196245 37 89.2 0 .................................TTGT | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.4 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCTAACATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTTAACAACAGTACATTACCTTATGTCATCCAATTAGCGAATTTGGGAATTAAGGCACTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAATGTGCAGAATCATCACTTAGTGCATCCTGCCGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTGTGCAAGTATTAAGCGATCGCTTATTTTAATAGAGCTAGTTCTCAAGAATCAGACTAATTTTCTTACCAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGGGCAAAAAAAGGCTGGACGCTCCATCTATACAAGACTTTCAGAGCAATTGTACTTTTAAACCATCCGCGCACCTTATAGGGACTGGTTTTCAGCGATTTGCATCTGGTGCTATGACTATTCCCTATGTTATGATTCAGTGGTTCGCGCAACTGCACCTTGAAAACCAAATACAGCAGCACTTTCAGACACCAGCG # Right flank : TGAAAATGAGGAAAAGCAGCTTTAAGGCTGACATGAATCGGCCATAGCAGCCCTAAATCATAGCTCCCCAACTTATTGGAGAAGTCGGAGAGATGTACATTAGTGTCACCTTATGTTTTTTATGCCAACTTTGACCTCTTGTCTTTTGACATATATTACTAATTCACTCACAATTTAGAAAACTTTCCCTATCTATAGAGAGATGCTTTCCTCTCTAATAAAGTTTAATAAAGAGAAAATCTACGAAATTAGTCTTTCCATTTGACTATGATAATGAAGTTTTTGGAAACTGCGATCGCTAGAATATTATTCACGAAATGTCAATAATTAATATTCAATATTGAATAAAGAAAATTGGATGGCATTAGAATCTCCATCTAAAGATTTTGGGCTGTTGAATTTGAACTCAGACAAACAAATAAGAGTGAGTTTCAATAGAGGAATACAGGCATGGAATTTTTATCCAATTCAGTTGTGCTATCACGGATGCAATTTGCACT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 7601-6909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000098.1 Nostoc foliaceum FACHB-393 contig98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7600 37 100.0 33 ..................................... CCTTAGATCCTTCTTCTACATTGGTGGCATGGA 7530 37 100.0 40 ..................................... AAGGGATAGGTAGGCTTTGGGCATCATCTCAGTCAAGTAG 7453 37 97.3 35 ........................T............ GAAAACTATTAGAAGCCAGTCCCTCGGTATACTTC 7381 37 100.0 36 ..................................... CCCTTGCTACTTTCCACACGATATCCCCACTCCTCA 7308 37 100.0 34 ..................................... CCCATGCCCTGAAATTTTTTGAATAGTACGAAGG 7237 37 100.0 35 ..................................... AAAACCGTTGACAACCTACTCGCTAAATGTCCGTT 7165 37 100.0 34 ..................................... AGCGCTGAAGAAAATAAGCATATAGCGAAAATAT 7094 37 100.0 39 ..................................... TGAATATTCCCGACATAGATATTAGAAAACTTAGCTGTA 7018 37 97.3 36 ...................T................. TAGTACACCGTGTAGTGAATTAAATCTAATAATATC 6945 37 83.8 0 ........C...............T....G..A.G.T | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 97.8 36 CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : ATAATCGAACTTTCAAAGTGTTCAATCAAGAACCAAAGATGAACCGCTATCAAGCCGAAAACTTAATTAAAAAGGCATTCCCCGCAGTACCCTACTCTCAAAACGATTTTATCAATGTTAAAGGTGACTATTCACCCTTTAACGGTGACATCGTTTATTGGAGTAAACGCCAATCTCAATTCTACGATGGCGCTACCTCTAAAGCCTTAACTTTACAAAGCCATAAGTGTGGATATTGTGGACTTTCTTTTGCTGATGGTGAAAAAATCCATTTGCATCATGTTGACGGTAATCATCACAACTGGAAACCTAAAAATCTTCTAGCCGTGCATCGTTCTTGTCACAATTTTATTCACTCTTGCAAGGGCAAATCGCCCTAGATTTGTCGTAAGCTGGATGCACCGAAAGATGCACGTCCAGATTGAAATGGGAGGTGCGAGGGATAATACCCTCCATCGACCCAACCTGACCACGAGGACTTCGTGACTCAACCTTGGGTA # Right flank : ATCGAGACAAACCGATAATAGAGCTAGTTTGGGCTAAAGACAGTGAATATTATCAGTTGTCACACGAGTATATTTGAGAGTTTGAGGAAACGAATAATGGCGAAAACTAAATATCAAGCTTATACAAACGTGCCAAAGCCGAGTCCAAAACTGGCAGAAATAATAAAGCAATCGGGGACGACTTTATATTTAGATACGGGGGCAATAACTCAACTCATAGAGTCAGATACATCGGTATTACAAATAACTGTAGGTAGACAAGAAAGCATATTTAAATTGACGGATATTCGTGCGATTATCGCAACAGAACCAGAAATTAAATCGTCAGCGCTCACAAAAATTCTGCGATGGCGTATTCCAGTAATTCTATTTTCTCAATCTGGCGAATTCTTGGGAAGGATTGAACCAGATTACAAAATTAGGGCAGATATCATGCAGTCCCAAGCTATGATGACCGATGCCATGAGAGTTGAGGTTATGCAAGGTGCAACTTGGGGTCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 10480-9802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000098.1 Nostoc foliaceum FACHB-393 contig98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 10479 37 100.0 34 ..................................... TTTTTAACCACTGGCAATGGCTTTTCTAGGATGG 10408 37 100.0 34 ..................................... TAGCAAGTTGCTGGGGCCGACTGACAGGGGAATA 10337 37 100.0 34 ..................................... AAATGTACATGACCGACCGTTACCGTGCTGGGTT 10266 37 100.0 34 ..................................... TGGGAGAGATGCCAAGTAGCCCCCCCCAGCTTCG 10195 37 100.0 36 ..................................... CTACCTTGAGCGAGACTTTTAGAATAACGACTACAA 10122 37 100.0 33 ..................................... AAAAATGTGCCAGCAAGCACATCATAATATTTT 10052 37 100.0 35 ..................................... TAATCAGGCAGTCAATTGGAGACAAACTGTAGATG 9980 37 100.0 33 ..................................... TTTCAATACCTGTTGTGTAACTCTTACACCTTC 9910 37 100.0 35 ..................................... AGAAAGTTTGCAAAATGGAGCAAGTACAATTCAAA 9838 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 34 CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GATGACCCGGCGAAAGCGGATCGTGATCAAGAAGTTGCTGGCGAAGTTTCCACAGTGGGGTATCGCTTGTGTTGATGGGGTGTTATTAAGGTGGAATGAATAGCGATGCCTACAGCAACCCTTTCAGGAAAAGCGCTTTAACCGCTAGCATATTCTAGTACAGAAATCGATTTTGAGAGTAGCGTAACTTTAGAAGCTATAGCTATTTATATCGTTATGATATGAAAAGTTCATCGGCTCACTGTAAACACAAAAAGATTATTTCCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAAGCAAAAATAGGGAAAGGGGTTTCAAATGCGCCTATTGCAACAGTTTTAGCCAAAATAGTTGCTCAAGCACCCGCGCACCTTACACAGACTAGGTTTTAGCTGTTTCTTTACTACTCAATCCAAATTCTCCATGCTATGATTGACCTATCCGCGCATCGGAACCTTGAAAACCTAATAAACACAGTGTTTTGGGCTTGTAT # Right flank : AGTGCGACTCGTTTTTGAGAAAAAAATAGAAATAATTGTATATAACTCAAAGTGAGAACGACAAGGATTAAAAAAACCTTGAAAATTCCATAACTAATTCTTGGATGTAGGTGTAAATCCTACCTTGGAAAGGAAACAATGACTCCCAATCTACCCACGCCGAGTAGACTCGGAATTCTACAGAGCGAAGCTGGGAATAAGGGCGCAATCAGAGCCAGAAGCAGATATGGCACACTGGCGCTAAAGGGGAGATAGCATGGATAAACAAGACCTAAAAAAGCGTCTTAATCCCAAGCGGTAATCTGAATTAAAAATACCGACTTAATATTTAATTTCTCGCAACAATATTGTTTCGTTAGTTGCATTCCTTTGAGAAGAATATAGGCGAAATGGTCTGTCCTAAACTATCAAAATAATCTGAGAATTGGAACGAGAAAAAATGATGTTGGAGTCTGGGGAAAAGGTCGAAAACCGAGTAGGTAAGACGAGATACGTAAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 2369-2766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000018.1 Nostoc foliaceum FACHB-393 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 2369 38 100.0 34 ...................................... ACAGCTAATTTGCGCTTGGTGGTCGCAATCGCTA 2441 38 100.0 35 ...................................... GTTCTATCTCATCAAATGGATTATCTAGAAACTGG 2514 38 97.4 34 T..................................... AATGCATCTTTAGATTTAGGGATTTGACGATAGT 2586 38 100.0 35 ...................................... TTGCCATTGCGCTAGTAAATTGGGCATTATTCAGG 2659 38 100.0 32 ...................................... ACGGCTATTCTTGGCTGTATAGTAGTCATTTT 2729 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 99.6 34 AGTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : AGCCGCTTAAATTTAATTCACTAATCCGAACCTAAAAAATATAATATTTTTATAACAGCGCCGCAGTTCATGCTTTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTCATAATGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAATATTTTTTTGGCGTGTCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAACTTTAAAACCCTTATCCAGTCTTGACTTAACAAACTAGTATGTCAATGCATTTAGTTTTTTAATTTGCAATTCGAGACTTTTTAAGCAGACCTGCCAAATTATGTGTATGGAAAGCTTTTATAGCAAGGGTTCTAGACGGGTAG # Right flank : GGCTTAAGTTGAAAAAATAAGCAATAAAAACTATGTACTCGCATTAACCAGATTTTAAAATGGTTAAAGAGTATAACTAAGTTATTAGGAGGGTTGAAAGGAGCGCTGCGATCGTACAACAGTTGAAGCAGTAAGTTAAGCAGCGCAAAATTGTAATGACAAATAATTTGTCGATATAGAAATTTTGACAAATATTGTGTCGCCACGGACAAATAATTTGTCGCTCTACAGGACAAATGGAGAATAACGGATTTGAACCGATGGCCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGAGCTAATTCCCCAAAATCTGTGCTAAGTCAAGAGTAATATCACTCATTAACTTAATACACTATCACCATAGAGTATTCTAACATTCAGTTACCGATGGTTGAGGCTGTTTTTGAGAATAAACCTTCTGAACCCGTTCGAGTTCCAAATCACTCAAATAATCAACAGTCCAGTTACAGCAGCGCTGGAGCATATGGAATGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28857-28319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000024.1 Nostoc foliaceum FACHB-393 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 28856 37 100.0 34 ..................................... TTGCTGCTGGCAACGTTGAAATTCAAAATGCGAT 28785 37 100.0 34 ..................................... CGGGCAATTCTTGAAGATAGGAAGGGTGAAACTC 28714 37 100.0 34 ..................................... ACTATGCGACCACAATGCAGAGAAGGGAGATGGA 28643 37 100.0 35 ..................................... AAGAAGTACCAAACTACTCAACTGAAATTGCCGCA 28571 37 100.0 33 ..................................... CCAGTCTTTGGGATATAAACTTTTGTCCATCGG 28501 37 100.0 32 ..................................... TCGATTTCATCAGATGATGGTGCAAGTGTTGG 28432 37 100.0 40 ..................................... AAATCAGCTTGCTGCCTTGAGATGACGAGTCTTGCTGAAA 28355 37 94.6 0 ............................A.A...... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 35 GTGACAACAACCCTCCTAATACAGGGTGGGTTGAAAG # Left flank : AGCAAAGGAATTGGCACTTTCTGCATACCATGAGCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGATAATAAAATAATCAATAGCGCCGCAGTTTATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTTAATCACCTCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAAAGTTCCGCGCAAGTTCCAAATACCTTGCCCCGTCTGAATTTATCGTTTTTCCATCGAGATATGATTCTTGTAACTGAGGCTCAAATAGGAAATTGGGAGACATACGCGCTGAGGAAATCTAGAAACGTCGCCCCACAATATTTTGAAACTAGGTGG # Right flank : TGCTTATGTATCGTGTGCTAGAAATTAGCATTTACCTGTAAAAACCAGTCTCATTATAATAATTTTGTGGTTTTAGTTTTGTAAAAGTCTTAAAAAATGAGAGGGTTGAAAGAAGCTCCTTACACCACATTCCAAGCTTTCTTAAACAAGCTTGTTAGGGTAAATAAGGTTATATTAGCCTTATAGAGTTGTAAGATGCTCAATAAGCTCAGTTTTTGTAAATGACACTAATTTGTCATTGGCAGTCTCAAAATACAAATTTGAGCTTAAACAACAACAATTTGTCATCATGACAACAATTTGTCGCCGATGACAAATAATTAGTCACTGTACACTTTAAAAGGGAAAAACCGCAAAACATGATGTTTTACGGCTTTCAGTGTGGTGTGAGGAGTTTAACTATATATCATGATAAATTAGCTACCCAACAACAACACACTCGTAACAATTTTGGTAACAGAGTTTTTTTCCGATGATCGCAAAGCTTGTCATCGTAACAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAACAACCCTCCTAATACAGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 34870-36218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTD010000029.1 Nostoc foliaceum FACHB-393 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 34870 37 100.0 36 ..................................... AGCAATTTCATTACTAATCACATCGCTCAAAATTAC 34943 37 100.0 38 ..................................... AGTTTGGCTCTGGAAAGTCTCTCTATCAATTAGAGCTT 35018 37 100.0 38 ..................................... ACCAATTTCATTACTAATCACATCGCTCAAAACTACAA 35093 37 100.0 35 ..................................... ACCTACCCCACTGCCACAATCATGAGTGGCAACTT 35165 37 100.0 37 ..................................... ACTTCACTACCTACGGGAGAAGAAGCGACTGTAATAA 35239 37 97.3 31 ....................................T GCAAAATTAGCTCTGGATGCTTAAATTGTTA 35307 37 100.0 34 ..................................... TTCAACTCTGGCTTTTCATCTTTATAATTATTCA 35378 37 100.0 38 ..................................... AGCATCGATGCAGAGCAATCCCTCCCAAGTTCCACCGG 35453 37 100.0 39 ..................................... GTACTATTCTCGATGCTGCGGGTGCTCTTGAGAAAGAGG 35529 37 100.0 35 ..................................... AAATTATGCTTATTGCTGAGATGGGGGCGGGTAAA 35601 37 100.0 37 ..................................... GAAAAGTTCAAAGCACTCTAAATATACTGATTGAAGA 35675 37 100.0 34 ..................................... AGTTTCCCGCTCAAAGCTTGAGGAAGAAATACGG 35746 37 100.0 35 ..................................... ACAAAGCCCAAAGGATAAAGTAGGTACCGAGGATG 35818 37 100.0 35 ..................................... GTAGGGGAATACTCACACCGAAATCTAATCGCCAC 35890 37 100.0 35 ..................................... GGGTTGCAGTGCAAGAGCTAAGGCTTTATTGGTGG 35962 37 100.0 35 ..................................... ATCACTTTTAATTCCCCTGGCATTGATAGTCAAAG 36034 37 100.0 34 ..................................... AAAACCCTGAAAGCGTCATCTTGATTTTGAATCA 36105 37 100.0 40 ..................................... GGGAGATTTTGATAATTTAGAATACGCTTGGTGGCTGCAA 36182 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.9 36 ATTGCAATTCATTAAAATCCCTATTAGGGATTGAAAC # Left flank : TAGGATTGCGAGTCAAGTCATCCTTTGGGCTGATTCGAGGTGACTTAGGAATTAGCGACCAAGGAGAAGTTAGATTTGAAGTTACTACAGGTCAGCGATTTTAACTTTTTCTAAATAAATACACTTCGCTTCAAACTTAGATTAATTGCTTCTGGAAGTAGATGCTTCCAAGATAAGAATGAAGCGATCGCCCATTTTGGTACTATTGAGCAAGTTGCATCGGGCGTTGTCATTCTCAACCTAAACAATGCGCGGAAGGGTAGGTGTACAAATTTCACAGCGCCAAAAAAGTGCTTCTATCCCAACTCCAGTAAGGCTTTTAAACCATTATCTGCCGAATCCTCATCCGCGCAACCTTTGAAATGCTTATCAATATACAATTTCAGCCTTTAAACTTTCCTAATGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTCCGGCCCCCGCC # Right flank : CTGACACTAATACCATTTCACTTTAATAATAATGATACAAATACACTGGTAAGGGCATGGCAATGCCATGCCCCTACGATAAATCTATATGTATCAGGATTTTTGTGAATTGATATAAGTCTTTGGCGGATTCTGCAAGCAAGGCTATTGCGGATTTTGCCCCTTGTCTGGCTAAAAGGAAAATAGCAAGAGAGTGTCAATTGCTCAGTCTTAGGAACGATTTTGAGGGAACAGATAGGCGATCGCAGCATAACCCGAAACACTAAGAAAACTAACCAAAAAAGCAGCCAGAAGAAAAGTAGACATAATATTACACTTATGCATTTCCAAAATCTCGGCATCCATCAAAAAACCTAGATTTCGGATACTTTCAAATTAGCAATTGGGTATGACACAGCCGTGGCTACCTTGTGTCAATCCCTTGTATCTCATATCATGTCCGCTTAATTAGTTATTATTCAGGGCATCTATGCAAAAATCTTAAAACTCTCTTTCCCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //