Array 1 1197831-1196448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXW010000001.1 Listeria innocua strain FSL L7-0291 NODE_1_length_1501383_cov_70.348073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1197830 29 100.0 37 ............................. GTTGGAAATGTTAATCCTTCTGGAAAAGGCATGAACG 1197764 29 100.0 34 ............................. TCGATTTGCAAGATGATCGGTGCAGGCTTGCTAT 1197701 29 100.0 35 ............................. AGCGTAAATGCTCCCGGCGGAAACACTGAAACAAA 1197637 29 100.0 34 ............................. TCAATAAAAGCAAAACGATGATGACGGCAATTAC 1197574 29 100.0 36 ............................. CACTCAAGTAACAACTTGGAACGCCCGCTACTGATT 1197509 29 100.0 35 ............................. ATTATGGGCGGGGATATCTATATTAGATCTACAAA 1197445 29 100.0 35 ............................. GAAATTCGTCAATCTGCACTTTGCACTTTTGCGTG 1197381 29 100.0 36 ............................. AGCCTTGACACGTGCCAGTAATATTTTCCCAAGAAA 1197316 29 100.0 36 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAGC 1197251 29 100.0 36 ............................. CGCTCAATGAACTGGGGTATGATGCGGAGTGGCGAG 1197186 29 100.0 35 ............................. GTGGTAAAATTGGCGGTTTTTTCATCAATATTCGG 1197122 29 100.0 36 ............................. TTGTAATCTTCGAGTGTTTTCTTTCCATCGGCAACC 1197057 29 100.0 34 ............................. AAGGAAGTCCGAAACTTTTCGCTACTTGGGCAGT 1196994 29 100.0 37 ............................. ATACAAATCGATGAGGGAGCAGAGCTACAAGAAATAA 1196928 29 100.0 36 ............................. GAATCCGATGTAATGATAGGCACTTATCCTTGTACT 1196863 29 100.0 37 ............................. TTTAAATAGAAAAAGCGGCATAAAAAGTTGTGGTTGA 1196797 29 100.0 35 ............................. TCATTTATAGCGACTATGAGGACGCAGACATCGTC 1196733 29 100.0 36 ............................. ATTTAAATGAACTTGCTGACGGATTGACGAATAAAG 1196668 29 96.6 34 .........G................... ACAACATGTCAAAAGGCAAATTAAAAAAGACTAG 1196605 29 96.6 36 ...G......................... TCTGGTAATGGTAGAGTATAATAATTAGTTCCTCCA 1196540 29 100.0 34 ............................. AGTATAAGCACAGCAATTCAGACAGCTATAATCT 1196477 29 96.6 0 ............................C | C [1196453] ========== ====== ====== ====== ============================= ===================================== ================== 22 29 99.5 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGATCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTATCTCTCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCAACAAAATCCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTTCTTCTCGACACCAAACGTCTTGGCTGCGAGGTTGGTATTGGCAAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1224298-1224074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXW010000001.1 Listeria innocua strain FSL L7-0291 NODE_1_length_1501383_cov_70.348073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1224297 29 100.0 36 ............................. TTTGTTTTAGTAAGCATATCTCGAATAAATTCAAGT 1224232 29 100.0 36 ............................. GACACATTCTTGCGAAACGAGTGTTTTTTAGAGTCA 1224167 29 100.0 36 ............................. AACTGATATGCGTTATCTACTGTTTGTGTTTTTAAG 1224102 29 86.2 0 ..............A...........GGA | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 96.5 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAGACCGACAGAAATTTGTGAATGCTTGGAGGAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAAGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : AGCGGCTTTAAAGAAATTACTAAATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCGGCAAATTTGGAGGAACTAACAGCGAACAGTGATTCTATTGTTAAAGTGAAATTTTTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAACAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGGTGACGATAAAGTAAGTTCCATAGTTAGCATGGGTTATGGTAAATTCAGTGAAAAGCTCCAAGAAAAACAAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //