Array 1 89901-90478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUD010000009.1 Escherichia coli strain 5454 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89901 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 89962 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 90023 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 90084 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 90145 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 90206 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 90267 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 90328 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 90389 29 96.6 32 ............................A CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 90450 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105980-107350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUD010000009.1 Escherichia coli strain 5454 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105980 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 106041 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 106102 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 106163 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 106224 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 106285 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 106346 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 106407 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 106468 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 106529 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 106590 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 106651 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 106712 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 106773 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 106834 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 106895 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 106956 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 107017 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 107078 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 107139 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 107200 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 107261 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 107322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCAGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //