Array 1 5312-6804 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWH01000096.1 Salmonella enterica isolate STY195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5312 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5373 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5434 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5495 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5556 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5617 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5678 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5739 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5800 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5861 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5922 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5983 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6044 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6105 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6166 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6227 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6289 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6350 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6411 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6472 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6533 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6594 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6655 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6716 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6777 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8918-10882 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWH01000017.1 Salmonella enterica isolate STY195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8918 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8979 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9040 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9101 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9162 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9223 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9284 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9346 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9407 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9468 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9529 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9590 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9651 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9712 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9773 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9834 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9895 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9956 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10017 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10078 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10139 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10201 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10304 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10365 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10426 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10487 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10548 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10609 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10670 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10731 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10792 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10853 29 96.6 0 A............................ | A [10879] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //