Array 1 18808-17559 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJN01000020.1 Escherichia coli strain 501 BN4_501_1_(paired)_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18807 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 18746 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 18685 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 18624 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 18563 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 18502 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 18441 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 18380 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 18319 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 18258 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18197 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 18136 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 18075 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18014 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 17953 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 17892 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 17831 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 17770 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 17709 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 17648 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 17587 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45405-44357 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJN01000020.1 Escherichia coli strain 501 BN4_501_1_(paired)_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45404 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 45343 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 45282 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 45221 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 45160 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 45099 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 45038 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 44977 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 44916 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [44890] Deletion [44876] 44874 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 44813 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44752 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44691 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44629 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 44568 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 44507 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44446 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 44385 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //