Array 1 130514-137124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000004.1 Thiothrix fructosivorans strain ATCC 49748 plasmid pTfr153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 130514 28 100.0 37 ............................ TGGGTAGTGGATACCGTACCGATACGGTGGTAGGCGT 130579 28 100.0 36 ............................ CTTTAGCAGATGTCGGGTGCAGCGGAAGCCACGGAT 130643 28 100.0 35 ............................ CCCGTAAACCACTTCTCGATAGTCCCAGTTAGATA 130706 28 100.0 35 ............................ CTGATTGTACCCGTTATAAAAGGAACACATAGCAC 130769 28 100.0 36 ............................ TTTCCGAGCGGGTAACAGTGGCAGAGGTCGAAGAGT 130833 28 100.0 36 ............................ TTTCCGAGCGGGTAACAGTGGCAGAGGTCGAAGAGT 130897 28 100.0 36 ............................ TTTCCGAGCGGGTAACAGTGGCAGAGGTCGAAGAGT 130961 28 100.0 36 ............................ TTTCCGAGCGGGTAACAGTGGCAGAGGTCGAAGAGT 131025 28 100.0 36 ............................ TTGCTCAATGCAGACTGACCCGATTGTGACATTAAC 131089 28 100.0 36 ............................ CTTGGTAGCCATTGCTGAACTTGCCAAAACCAACAA 131153 28 100.0 35 ............................ TTGGTCGAATGCTAATGCTTACATGACATACCAGT 131216 28 100.0 36 ............................ ACTCACCTTCAGCGCACGGAGTTTCAAGGCACGGTC 131280 28 100.0 36 ............................ GCAGCAGGTACGGTCATCCAATCGGCTGCGATCAAT 131344 28 100.0 36 ............................ CGAAACTGCTGTCCCGAGCCGACGGCGCATAGTGGA 131408 28 100.0 36 ............................ GGTGATGCGTCCAAACTGTTGCCGTTACTCGGAAAC 131472 28 100.0 36 ............................ AAACACCTGATCGTTACTGACAGGTGTTTAAATTGT 131536 28 100.0 36 ............................ TGCCGACCATGCTCATACTGCCACCGTGATATTCAG 131600 28 100.0 36 ............................ GGCACTAAGCGGAGGCGTGGAAGGAGCAGAAAGCAT 131664 28 100.0 36 ............................ CCCCGCGTCTGTCACGATCAATATCATCGGGTACGC 131728 28 100.0 37 ............................ CCCAGTCACTATTTGGCATACGCTCAGTAAAGCGAGG 131793 28 100.0 30 ............................ TTCGTTCAAAGTTGACTCTGACTCTGTGAT 131851 28 100.0 36 ............................ GATCTTGCCGAGTTCGACCGGCTCTAACAGTAGATA 131915 28 100.0 36 ............................ GCAGCTTAGACATCCCCTCTGATATTGAGGATGCGT 131979 28 100.0 36 ............................ GCTTCCATCAGTCGCTCTTCATCCGTTGGCGGGGGT 132043 28 100.0 38 ............................ ATATGCCAAAGCTTTGGCATGGAGGGCTTGACGCTCTT 132109 28 100.0 36 ............................ CGGATGCCTTCGCAGTGCTGGGTAAATATTTTGATG 132173 28 100.0 36 ............................ CCAAACCTGTGGATCGGCGACCGGCGCGTGATCATC 132237 28 100.0 36 ............................ TTTCATTTTGGTTTTGAACGCCCGCAACTCTTGACG 132301 28 100.0 36 ............................ TCAATGCTGCAAGCTGCTTATCGACATCCGCACCAA 132365 28 100.0 36 ............................ TGCTGTCAATGCTGCTGTTATGTTCGGTGATGACAT 132429 28 100.0 36 ............................ AATGTTCGTGATTTGTTCGGTAATGCTAGCCGGTCA 132493 28 100.0 36 ............................ GTCTTGCAGCTTGGCATCCATATTCATTTTTTGCCC 132557 28 100.0 36 ............................ GATGCGTATCACCCTGTCGGTAAGCGCCCGTGTTCG 132621 28 100.0 36 ............................ TCTTCCCCACTGGATGGAGAGAATCCCCACTCAATG 132685 28 100.0 36 ............................ GATCAGCTCTTGATTCGTGATAAAGCGCAATTGCTT 132749 28 100.0 37 ............................ CCATTATTCATTCCCCTTGTCCCCGCCATTTCTGGCG 132814 28 100.0 36 ............................ GAAGGATGACTTCCCTCAGGCGTGCGCAGTGTCGAA 132878 28 100.0 37 ............................ ACACGATCAAGAAAAGATGAAGCGCGGGAACTATGGT 132943 28 100.0 36 ............................ TACAACCTACCCGAAAAACACCCAGTGTCAAAACTG 133007 28 100.0 36 ............................ ACGGCACACTCACGGTGCAGGTGCAGACCTACCAAC 133071 28 100.0 36 ............................ GGCGGTGATGGCATCGAATCCAAAGGGCGTGCGCTG 133135 28 100.0 35 ............................ TACAGGCTAGTTGCACCACCAGCCGTTACTGTAGC 133198 28 100.0 35 ............................ TTGCATTCCAGCGCCGGTCGAGTTCGTCACTCAGC 133261 28 100.0 36 ............................ TAGGCGGTTTTTGTACTCAATCAAATTGTGCGGATT 133325 28 100.0 37 ............................ CCCCCGCACTCAGGGCAGTCTCGGAAGTTCCAACGAT 133390 28 100.0 36 ............................ ACTTGCGCATATCAGCGCGGATTTCGCGGTTGCGCT 133454 28 100.0 37 ............................ TGAAAAATTCATCTTTTGCGGCTTGCGGCAGTTTGTC 133519 28 100.0 35 ............................ CTGGATACTGGCGGCAAAAAACATTACTCCGAAAC 133582 28 100.0 37 ............................ TTACTCACCATTGGCAGAATCGCCATTGTCGGAAAAT 133647 28 100.0 37 ............................ TTTAGATAAGCGGCACGTCCGATGACTGCCCGCTTTT 133712 28 100.0 35 ............................ ATGTCAGCCCTCCGCTCCCATTTGCATGTAGATGT 133775 28 100.0 35 ............................ TTGGTGTCTAAGTATTCGATAAATTCCGCATAATA 133838 28 100.0 37 ............................ CAAAAGCGAGCATGGCAGAGTCAGGCGACGTAAAAAA 133903 28 100.0 37 ............................ TGATATTGTTATCCGTTCCGATTCAGTCATTGGTCAT 133968 28 100.0 35 ............................ CTGGTTTAGCAGGGCAGTGGGGTCGCTTTTTAGGA 134031 28 100.0 36 ............................ GATCAGCGTTACCGCCGTGCCGATACCTACACCCGT 134095 28 100.0 36 ............................ GTTACACGCTAGCTTGTATAAGAACGTTACCAAACG 134159 28 100.0 36 ............................ GATAGCAGGGATTACTATGTGATCGGGGCACTGCAC 134223 28 100.0 37 ............................ CAGTGCTGGCGGTCTAGTCAAAGACATTATTGCCCAC 134288 28 100.0 36 ............................ GCATCCGGGCGATAGTCGCCTGAGCTTTAACGCGAT 134352 28 100.0 36 ............................ CGGTCATTGTTGTATTGGCGGCGATGTCGACCGAAT 134416 28 100.0 36 ............................ TTTACACAAAACCTCACCGACTCACCCGCTCACGCG 134480 28 100.0 36 ............................ CAGCCCTAGCTCCACGATGTCGTTCAGTTTCTCGTT 134544 28 100.0 36 ............................ CGCCTGCGGCTGCATGAAGATCATTCAGAGAATAGT 134608 28 100.0 36 ............................ GAAAAATCGTGGGAAGTACAAGAGCATTTGATCGAC 134672 28 100.0 28 ............................ CTGCTGCTGGAGGCTGAAGTGGATGCGG Deletion [134728] 134728 27 92.9 36 ..-...G..................... CCGTTCCGCGCTTTCCCCCGGAAACAGTTCCGCCCC CC [134733] 134793 28 100.0 35 ............................ CAGCAAGTTAACTTTCCGCTGCAATGCTGACGTAT 134856 28 100.0 36 ............................ ATGTCACAAGCAAAACCCGTATATATCCAAATCAAC 134920 28 100.0 37 ............................ CTATTGGTCGTCATTGCTATAAGCGCATCGCAGCAAT 134985 28 100.0 36 ............................ AAGCGTAAACGTTATTTGCTGATTTGTTTTTACGCT 135049 28 100.0 36 ............................ GCTGATTGCGTGGCGCTAATACGCCATTTCCGCCGT 135113 28 100.0 36 ............................ TAGGCTTGCGGATGCACGGCGCAGAAGGTGTATTTC 135177 28 100.0 35 ............................ GCGATTAGCCACGGCAATCACTAACCCATAACTGC 135240 28 100.0 35 ............................ TCGTGCCGCTTCCGCAGCGGCGTAGGTTTGATATT 135303 28 100.0 36 ............................ GAATCCAGCGGTTTCCTGCAACAAATCAGTGTGCAG 135367 28 96.4 36 ..........T................. ACCGCCGAATCCAGCATCAGTGTATTGCGGCGGCGT 135431 28 100.0 36 ............................ AGGCTAACCCAGCACCTAGCCGCCCTACTCAAACAT 135495 28 100.0 36 ............................ ATCACTACCACGATGGAGCTAACTACCCACACTTGC 135559 28 100.0 36 ............................ TCAGTCACGCCAGATTCACCACCGACTAAATGTAAT 135623 28 100.0 36 ............................ TCAGTCACGCCAGATTCACCACCGACTAAATGTAAT 135687 28 100.0 37 ............................ CGGATTAATCGTATACATGCGTAGCTTGTTATCCTCT 135752 28 100.0 36 ............................ AGACTTAACCAATAAAGTTTACGGTGAGTTAGCCGT 135816 28 100.0 36 ............................ TTTATTAACATGCTGAAAGGCGAACACATAGTTAGG 135880 28 100.0 37 ............................ ACGGATTTATTTTAAAACGCAATCACTGATAATCAAG 135945 28 100.0 36 ............................ TATCCCGGATACATTAATATATGCTCCACGCCAAAC 136009 28 100.0 36 ............................ GGCTTGCTCAATCATTTCACTTTCTCCGGCTTGCTT 136073 28 100.0 36 ............................ CCATTCACTGTTAGGGCTTTGGGTGCAGAACATGAT 136137 28 100.0 37 ............................ GATAGATGTAGCCGTCGCCCATGCGGTAGGGGGTAGC 136202 28 100.0 36 ............................ CTCCATCATCCTGTCAACAGGCCATGAAGTAACGCT 136266 28 100.0 36 ............................ CTTTTCTTCAGCGTAGGCTTTAGCTCCTACCGAAAG 136330 28 100.0 35 ............................ ATGTATAATTACTGGCGCACCGTCAGCACGGAAAT 136393 28 100.0 35 ............................ GTGAATCTGACGGCTCATACAATCTTTTAAACGGT 136456 28 100.0 37 ............................ TAGGGCGGCGAAGGAAGGGCGGCTTACCATCGCTAAC 136521 28 100.0 36 ............................ CTGCCAAAGGCGCTAAAAGCTCTTTAGGCGCGTTCT 136585 28 100.0 36 ............................ CAGCTATACGATAGCACCGGCAGTGCTGGCGCAGAC 136649 28 100.0 36 ............................ CGTATTGATGACCGATACCCTGCTCAGCGGCGTACT 136713 28 100.0 36 ............................ CCTTTGCCGAATCATCGCCATGCAGTACACCCGTGC 136777 28 100.0 36 ............................ AAATTGTGAGCAAAAATAAGCCGCAAAGCAAAGCAG 136841 28 100.0 36 ............................ ATCATTAACGCCAACAAGCTCCCCCGCTCTTATATC 136905 28 100.0 36 ............................ CGGTAGGGGTCAAAACTTCCTTACAACGTTTCAAAC 136969 28 100.0 36 ............................ GTCCCCGCCAGAAATGGCGGGTGTTGGTTGATTGGT 137033 28 100.0 36 ............................ CCGTGCAGCCGCCAACTGTTTTTCAGGCGTGAGCGT 137097 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 104 28 99.9 36 CTCATAACCCCGCATGGGGATTCGTAAC # Left flank : TCACGGGCAATCTGCACATACACGGCAATTTGTTCAGCCGTGAGACCAGGCCATTCCAGCAAGGCGGAATGCGGCAACTGCCCTGCACTCGATGACGATGCACAGGCATAACTAGGCAGCGTTTCTGACATACGCAGCTCTCCTTAAGTTTTTAGGTTTAGGTAACAAGAGTACCGGGTGAACCTATCGCTCTTAAGGAAGCGACGCGCTTATTTCCGCCATTGGCGGTCTTGTATGCCACGCACACCCGGAAAGCCGGATTGTGGACATAAAAAAACCGCTCAAGAAAGCGGCGGATTGTCCGCCTTAAGATGGGATAGGTGTCCCGTTCAGTTGTTATCAACGAGTGTAGGCGAGGGGAGGGGAGATGGCAAGGGGAGGGGAGTTTTACATGTAAAACTTATCCTGCGTCAATTACGTTGTTCAGTTGATGCCAACCATCTTAGCCGGTTAATTGACGCGGGATAGACCGCCAGATCGAGTACATCGGCGATATAACT # Right flank : CCCCTGATTTCAAGCAGATTTTGGGCATTCCCACTTGAACCAGACAGGGTAAACATAGCATGAAAGTGTGGTGGATACTCATCAAAGGTAGGGACTTTTTACTTCAGTGGCGGGCGAAGTTGCCTATAAAACCGAGAAATCGCGGCGATGGTCATCGACTGGCGTCTGTTTCAGTTCGCCTTTGCCAGCCACACCTTTCGACAGATGATTGACCTCAACATTCTGGCGGTTGGCAGCACTAATTTGCGTCACCCGATCACCGGGTATCATCAATTTGCCCAGCTCACGCCGCAATTTGATGGCCTGAGCATCGGTAATGTCGCCCGTAAATACCGAATACTGGTCATGATTCAGATAGCGGCGCAACAGTTTTTTGAACTTGTCGGTGCGCTTGGCCTCGACATCGTAAGTTATCAGCATGAACATTCACACCCTCCGTTTGAACGCTTCATATTCCCCAGCTCCCAGTACTTCACGTTCCAGCCCCAGTGCCTCGCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 194388-196510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000007.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt1_linear_313Kb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 194388 37 100.0 34 ..................................... GACAACGGCGGCGATTGTTCCGCCCCATGCCGCT 194459 37 100.0 35 ..................................... TAAAAACTGACCTTGGTTACTATTGAACGCACTGC 194531 37 100.0 35 ..................................... TGCTTGGAATAATTCCACCGACTGCTTTGCTTCCG 194603 37 100.0 34 ..................................... ATCACCAGATGATGAAGGCGTAGGCAATGGTTTT 194674 37 100.0 36 ..................................... AAACAGAAAACAGACTTGAAGCAACAATGCTATTAT 194747 37 100.0 35 ..................................... GGTTAGGTTTCGGTCAGCTTCTGGGATGACCTGAA 194819 37 100.0 35 ..................................... AAAGTGCCGGGTACTGACCTTGCCAGTAGCGGTAA 194891 37 100.0 35 ..................................... CCCAGTATGAGATCAATGGTCTGCGCAAGCTCTCG 194963 37 100.0 35 ..................................... AACCCCAATGCCGGGGTGAAACGCAATATTTCCAG 195035 37 100.0 35 ..................................... ACGGTCGGTTTCGACGGCACTTGCGTGCTGGAGCG 195107 37 100.0 34 ..................................... AGGCAATGCCACGGGAACACTCACCGCAGCGGCT 195178 37 100.0 33 ..................................... GTCGATGTGGCGGTGATTTGAGCCGCGTGGGCG 195248 37 100.0 34 ..................................... CTGCAAACGCAATACCTCAATTACGGGATGCGCG 195319 37 100.0 34 ..................................... TTGATAGTCGCCCCGCAACGGTGTTGGAAGCACC 195390 37 100.0 33 ..................................... CTATTATTAAGTTGACAGGGTTGTTATGCCCTG 195460 37 100.0 37 ..................................... CAAATCAACGCCTTTGTGATCGGCGACGACCACGACC 195534 37 100.0 36 ..................................... TACTGCTACAATCGTAAAAGGGGTAACGACTGTGAT 195607 37 100.0 36 ..................................... GAGTCCATGTCCAAGGCGGCGAAGGTGCTGAACCTG 195680 37 100.0 35 ..................................... ACTGGGCAAACCCACCAGCATGGTTAGTTGCAGCC 195752 37 100.0 36 ..................................... CTAATCACTAGCTGATTAAAAAACAGCGGTACTCAA 195825 37 100.0 33 ..................................... ACCGCAGACAACCAATACGGCACACCGTAAATG 195895 37 100.0 35 ..................................... CCCTCAGTTGCATCGCTCGCAGTATGTTGCGCTGT 195967 37 100.0 35 ..................................... ATCTGCGCTCATGGTCAGTTGCCGCGTTTGCAATT 196039 37 100.0 37 ..................................... CACTTTGCCCGCGAGGCGATTGTTGACGCGCTGAAAA 196113 37 100.0 34 ..................................... CACGACGGACGACGCGAAAACGCGCCGCCCGTGA 196184 37 100.0 36 ..................................... CGCCAGATCTTGCCAAGGCCATTAAAGCGGTGTTGG 196257 37 100.0 37 ..................................... GCATGGAGATAACCGCCCAATGAAACCGGGGAATACT 196331 37 100.0 34 ..................................... AGCGTAGCGATGGCGCGAGCATCAAGGGTAGGTG 196402 37 100.0 35 ..................................... CAAGATGCGTCAGCGATGGGCGGCGGTGTTTCCCC 196474 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 30 37 100.0 35 ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Left flank : CCTACACCTTTACACAACAACATGTGGATGAATTGATTGCACTGGATCAGCTTGCCCCCGCCAAGCCACTCAATCAATTACTGCTCCTAGAAAACGGCGATAAAACCCTCGCTTGGCAAGATGCTGCCAGCTATTATCGTGACGCGCACCAACTGATTTTTCAGGGTGGTAATCACGGTTTCACGCGCTTCAAAGCGGTACTCGATCTGATCGACCAGTTCTAACATTAACCAGTAGGATGTAGAGGCATATATCCCGTTCTTTAACAAATGAGTAAAGAAGCCTTTTTGCAAGTTTATGCTATAATGAACGCTGAAGTGTATTGCGCGAACCCTTAGCTATGGCGAATCTGCTGGGGATTTCGCGGAATCGTAACCCTTTGATTTTACTTGGACTAAAACCATGAACTCTCGCCGCGAACCATTCATCACTCTCCCGCCCTATCGGTTCGCGCAAACACGTCAAAAATCTCTTGTATTTTATGCCCTTACATTTGGGCG # Right flank : CAAGCTCTATCGCCCGAACCCGAATGGCACGTTGGACATTCTCCCGGCGTAACTGAACAGTCCCCCCTTACCCAAACGCACTAAATTTGCGACACTCCCCCGATGACCCAACAACTGAAAGACCACAGCCTCAAACAGCTTAACAGCCAGTACCTTGCCAAGCTCACGCCGGAGGAACTGCTGCACCTGTCGACCAAGTTGTTGCATGACCTGAAAGAAGCGCGGGAACAGATCAACCAAAACTCCAACAACTCCTCCAAACCACCCAGCAGCGGTTTCCCGTGGGAAACGTCACCCAAAACGGTGGCTTTGCCCGAAACAGAAGGGGTGGGTGCAGCCAGAGGAAAGCCAACCCCGGAACCAGAAGCTGTGGCGGGCACAAAGCCAGCCCAACCAGCCAAACGCAAAGCGGGTAAACAACCCGGCGCACCGGGTTATGGTCGGGTATGGCATCCGCCCATCAATGCAGACGAACACCATTACCCCAGCCGATGTGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 2 198193-201520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000007.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt1_linear_313Kb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 198193 37 100.0 35 ..................................... ATCGGGCATGTATTCATCATTGACCAGCGTACCGC AC [198196] 198267 37 100.0 34 ..................................... ATACAGCTTTCCTGCAATCTCTGCGCCATTGGCT 198338 37 100.0 38 ..................................... ATTGGCTGTAATTGCGTTAGCCGCAATTTTATCAGTAG 198413 37 100.0 35 ..................................... CCAAGATTAATTGCCACCATTATCCGACCCTCTTA 198485 37 100.0 33 ..................................... GCCGAATACCGTCTTGGATGTCCTGAAAAATTT 198555 37 100.0 33 ..................................... CTGCGCGTGATCATTTCGGGCAGCGGTTTTCCC 198625 37 100.0 35 ..................................... AGATGGTCTATTACCGCCGCAAGGCAGTATCTGTC 198697 37 100.0 33 ..................................... ATCCAGCAGGATCACACCGCATTCGACCATACC 198767 37 100.0 33 ..................................... TTCTGTAATTACTCTGTCATTACCTGTCATTAC 198837 37 100.0 36 ..................................... GGCATCAAGAGTTTCATCACTCAAGCGCTCAAGCTG 198910 37 100.0 35 ..................................... ACTAGCCTTTACATATACGTAACTTAATACTAAAT 198982 37 100.0 34 ..................................... ATACGGTAACTGGGGAACTAACGCCTGCCCCGCG 199053 37 100.0 34 ..................................... AACACTTGACCGTCTGTGCCAGCACTGCCAGCGG 199124 37 100.0 35 ..................................... GGTGAGCAATGCGGACTTGGTGCGGTCGGTTAGCA 199196 37 100.0 35 ..................................... CGTCTACGCCGCCAGATTGACGACTCGCACGCCGA 199268 37 100.0 36 ..................................... TTGCACCAGTTGCACGAGGATTGACTGGCGCGACTC 199341 37 100.0 36 ..................................... ATGACCCCTGCCGACCTGTTTGCTGGCGCATCCAAC 199414 37 100.0 34 ..................................... CCATATTGTAATGGCATTTGATCACTACATGGAT 199485 37 100.0 35 ..................................... CAGATCATGGGCAATAACCACGCCGCTTGTGGGTA 199557 37 100.0 35 ..................................... TTGCCTTCCCTTGAGAATGAAGCGGATACGGCGGG 199629 37 100.0 33 ..................................... CCGACTACATCACCCACCGCACAAAAGAGGGCG 199699 37 100.0 37 ..................................... AACTACTAAGCCGGAGCAATACCATGACACCTACAGC 199773 37 100.0 35 ..................................... CGCCTCCATTTGCATGTGGGGCCAGAAACCCAGAT 199845 37 100.0 36 ..................................... ATGATAGCCTGTCTCCTTCAAGTTGTAGGCTGTTGT 199918 37 100.0 35 ..................................... CTTCAAGGTCGCCATTGGCGCGGCAACCTGTTCCA 199990 37 100.0 33 ..................................... TCTGCCAACTGATTGGGGTTGTCTATTCCCCTC 200060 37 100.0 36 ..................................... TCGCTAGCGGTGTCACCGTTGGCATTGTAGAGGCGC 200133 37 100.0 33 ..................................... GCATATCTCTCTGCTAGCCGTTCCGCCTCTGCT 200203 37 100.0 35 ..................................... CCAAGTCTTAGTGCGTCCAGCAAAAGCAAAGCAAT 200275 37 100.0 34 ..................................... CTATGTGGAGTATATAGAAGGCTCAGGAACAATA 200346 37 100.0 35 ..................................... TTAACTTATTAAAGTTCCAGCCTATACCGGGTGAC 200418 37 100.0 33 ..................................... AAGCGTGCAACGGAGTGGATGAAAAGCGAAGTT 200488 37 97.3 33 G.................................... CTCTTGGCATAGTTGCGGCAATTGTTAATGAAT 200558 37 97.3 34 G.................................... CCACCGTGAAATAAACGAAGCCCTTTAGATCGAA 200629 37 100.0 35 ..................................... GTAAGAGTTTTAAACCTGTGGCGGCGGATAAAATC 200701 37 97.3 33 G.................................... CAGTAGCGGCAATCCCACGAAATCCCCCGAAGA 200771 37 100.0 33 ..................................... ACCGAAATTCCAACGCCTCCGATGTAATGACCT 200841 37 97.3 36 T.................................... CCCGAATACGCCATGACCGACGACGGGGTAGGGCAT 200914 37 97.3 34 T.................................... CCTGAGTGGTTAGCAGAAGTTCCAGTCGCGGTGC 200985 37 100.0 34 ..................................... TTTAAACCACAATGAGGACTAACAACATGGTAGG 201056 37 97.3 34 T.................................... CCTTTAACTGAGAGGACTACAACGATGAACCGCG 201127 37 100.0 34 ..................................... ACGAGTAGCAGTGATGGTTACTTTGTCATACGGC 201198 37 97.3 34 T.................................... TGAAACCAGTGGCATGACAACTCAACGGCTGCGA 201269 37 97.3 35 T.................................... ACGCTGGTAATCATTGATACCGCTGGCAGGGAATC 201341 37 100.0 35 ..................................... TTTGGCTATAACCTTTGCGTCATCGAACTCAGTAG 201413 37 100.0 34 ..................................... TGCTGACTGATGCAGGATGGGAAGACTACTGCGA 201484 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 47 37 99.5 35 ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Left flank : TGGACAAAGACGGGCGGACGTTTGGCAACTTCACCCTCGCTTGGCTGAGGGTATTACAGGACGACATTTACGCTTGGCGGGCAGCAGGCGGCACGGTGGGGACGCAAACCGACGTGATCCGTCAACGCCATCAGGCAAAACTCCTGGAATTCAGGGCATTATGCTTGATCCATGCCGTATCTGCCCATGACAAGACGGCGGCACTGGCGAAAGAGTTCATCAATGATTGGGATGCCATTTTCCGAATCCTTGACCACCCGTGGCTTCCCTTGACCAATAATGAGGCTGAGCGGGCGTTGCGCCATTGGGTGATCCTGCGCAAAACCAACCATGGCACAAAGAGTGCTACGGGGAGCCGTGCGTTTGCCATGCTGGCCAGCATCATCGGTACTTGCCGCAAACGTGGACAGTCTGCCTTGGCTTATCTTGCCAGTGTTATTACCGCTGCCCGCGCTGGCTTTGCCCTGCCCGCTTTACCGCAAGGGGTGGGGATGTGATCA # Right flank : CACCAGCGATAACCGAATTTCCTGCAAAACGCCCCATCCTCATTTATTTTACGCAGGAGCGAGGTTTAAACCCTTGCGTTTGCTTTTCGTGGCTTTCGCAGCAGGTTTACTCGGAATTCGGGTTTGATAACGGTCATGGTAACGGTAATCCATCGCTTCTTCCTGCGATTTAACCATCAGAAAACCCACTACGTTTTGGCGAACGCGCCGCAATTGTTCGATTACCGTTATCAAGCGTTTACGATTAATATGGTCTTCGTCCGCCACGATCACAGTAGCTTCTGCCATTGAAGACAAATAAATAGCATCCGCAAAACCAGCCGTCGGTGGACCATCAATAATAATACTATCAAAGTGTTTGGTCGCAAGGTTCAACAACTGCGCCATTGCAGGGCTAGACACCATCCGCACCGGATCAGAAATCAACGTACCTGCCGTAATCAAATACAAGCCTTTCACTTCGCGAGAAGGGTGCGTCACTCCCGCAATATCGACTTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 1358488-1358104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000006.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_Ch_unt0_linear_2Mb_v8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1358487 36 100.0 32 .................................... GTTATCAATGATGCTCATTCTGAAAAAGATGA 1358419 36 100.0 34 .................................... ACTGGTATTTCTTGCGATAGTTGCGCTGAAAGTT 1358349 36 100.0 34 .................................... TAGCTTTTTGCTTCTTTCTTTGCTGCATCGCAAT 1358279 36 97.2 33 .......T............................ TAGATGAGGTCAAAGTCATCTTCAACAGCAGCC 1358210 36 97.2 36 .......T............................ ATAAAAGCCGTGCAGCACATCACCAACGCGCAAATG 1358138 35 83.3 0 ..-....T.................A.A.G.T.... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 96.3 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TGAGTTGCGAGCAAGATGACGCGGATGAATATTATCTGGAAAAGCCGTGTCTGATCGTAGAAGTTACCTCCAAATCCACCGAGTGGAAGGATTACGCTGAAAAGCTGATTGCTTACCAAAAACTGGCATCGTTACCGGTTTATTTAATTGTGGCGCAAGATCAGCCGCTAGTGACGATGTACTACCGCGATGAAGAAAGTGGCTGGGAAGTGGCGCGATTCGATGATCTGGAACAAGCGCTCACGTTGCCCTGCCCTGACTGCACGTTGACACTGGCTGACATTTACGAAGGGGTTGATTTTACCCAAGCTGCTGAATAATCCTTCCATTCGCAGTGAAATCATTGTAAAATCAAACCATTAACACGCAAAACCTGAGCGTGTCGCTTCTTTAAAAACTTGCTTCGTTGGATTTTTGCCCAAGACAACTTTTTATACAGTGAATTTTCTGCTAAGGGTCTCTGTAACCCATTGATTCAAAAGGCTGATTAGACACGAGCC # Right flank : CATCCCAGTAGGGGCAATTCATAAATTACCCCTATACTCCGCCATCCCCCACTGCTATCATTAGCTTAATTTATTAACAAAAATAGCACGGGGCTTCTCATGGGAATTCGTTTCTCGTCCATCATTATGGGCGCAATCTTGGCAGGCATCGGTTTTGTCTGGGTACTCAGCACAACCATCGCCGCTTTTGGCTGGTTACAAACCTTCGCCAGCATCGTGCTGACCCTCGCGCTCGGCTTGTTCTATCAGATCGGCTACAGCGACGGTAAGAACGCTCACTACCTAAACGCCAAGCCCGGCGACACCACCCCAACACAGCAACGCTGCGCACCAAAAGCGTAAATCAGAGACAATGCCAGCTATCTGTCAAAGTTGACCATCAACCGTTTTGCTTATTTGCTGCATCGCAGCAAATTTGTTAGCCTCGTGTGAACCCTAAGCCCATCGCGAACGTCTAACACAAAATAACGTTCACACACCAAGGTTACACAGGCACAACG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : TTCTGAATACCGCCCTGATTTAAAAGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1369075-1367774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000006.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_Ch_unt0_linear_2Mb_v8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1369074 36 100.0 35 .................................... GTATCATCCATGCCCAGTGTGCGAAACATATTTTT 1369003 36 100.0 34 .................................... CGCAGCATTGAGGTCGCTTCTTCTAATCCATGGG 1368933 36 100.0 33 .................................... CCAGTCGGACACAGCCTAAACGGCTAGGGCTTA 1368864 36 100.0 33 .................................... GCATCCGCCTCCAGCTCCCGCTGTTCGGACGTT 1368795 36 100.0 33 .................................... CTAAGTGGATGATAGACATATCGTTCCCCATGG 1368726 36 100.0 35 .................................... TCTGTGGCTTTAGAAGGACGGATATAATCTAAATC 1368655 36 100.0 35 .................................... CTAGACTTCGTCAGTTCTTCGAGCTCGGCTTCAAG 1368584 36 100.0 34 .................................... TTTTACAACACCGAGACTATTACCGTCAACAATA 1368514 36 100.0 34 .................................... TGTGTCTATGGATATACCTTAGCACGGACATACC 1368444 36 100.0 34 .................................... AAACCTTCCAATGACCATTGTGGGGTCTTGTGTC 1368374 36 100.0 35 .................................... ATTACTAAAAGTAAAGACATAATCTTTTTCATAAC 1368303 36 100.0 34 .................................... CCCCAGAGTCACCCAGATAAGGAAATAAACTACG 1368233 36 100.0 34 .................................... AGGTAAACAACATACTATATTGTTTTCTTTAACA 1368163 36 100.0 34 .................................... TTTACTACGCAACCGGGAGAAGCTACAACAGCCG 1368093 36 100.0 36 .................................... CCAATGGGCATTGACGCAACAGAAGATGCTCCAGGT 1368021 36 100.0 36 .................................... TTAGCGATAGTGTAGACACCTGCGTTTTCAAAAGCC 1367949 36 100.0 33 .................................... AGTGGAGCTGCGCTTTCAATTACAGAAGCAATG 1367880 36 100.0 35 .................................... ACCTGTATTCGGGGTAGTAGCTCAAGAAGATGACT 1367809 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 19 36 100.0 34 GTTTGAATACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TCTCGCCATGCTGGCGCGGTGGACTGGGCAGAATCGGAGGGCTTTCATGTCGATGCGCGGCTGGCGCATTTCGATGTGGCTATTGTGCAAGCGGGTGATCGGGTGCTGGGCACATTGCCGATCAATTTGGTGGCGGAGGTGAATGCACGCGGTGGTACGTATTTCCATCTGACGCTGGAGTTACCATCCGATGCGCGGGGCAAAGAGCTGACGGCGGCGGATATGCGTACCTACGGGGCGCGGTTGGAAGGCTATGCGGCTCAGAAACAGGTTTGATTAAAACAATAGCTTTAGTGGTTGTTTTTGCTTATAATAGCTGCAACAGGTAACAAGATTTGCCTGTGTTCTTTGACAATTTATGATGCTGTATATTGCTAGAAATATAGTCTTCAAGTATCCAAACGACGTGAGCCAAAATGCTAACTTTTCAAAGCCGATTTGATGTCAAAATTCATACACCGCAAGTTGTTGAAACCAAAGCGTTTCCGACGAACGGCGGG # Right flank : GTTCTCTTTCAGCATCTTTTAGTCTGAACCATGATTTTCAGAATTAAAGGCTTGCCATGATAAGAATACATGCCGTAATCCTACTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTTTAATCCTAAAAATTCCAGTTCAAGACAAACGATCCAGACGATGCTTGCTGAATATTTGTATGCACACTAATTGTAAGGGTGTGTTATTGTATGTACAATAATTCAGTATTAGGCAGGCAACATGCTTATTCGGTGTGACCCGCGCAAGGATGCGCTCAATATCCGCAACCACGGTCTTTCATTGAAAGAGGCGGAAAATTTGGAGTGGGATTTGTTGAAAGCCGAGGAAGATGCCCGCTTTGCTTATGGCGAAATGCGCATGGTTGGTTTTGTGCCGATGGGTATGCACCTGTTCTGTGTGGTGTTCACTGACTCTGGCGAGATTCGCCGAGTCATCAGTTTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 692121-695094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 692121 37 100.0 34 ..................................... TATCAGTAAAGTGGCGGCGCGACGGGTTGCTGCG 692192 37 100.0 34 ..................................... TGTGCGATGCACCCCGTTTTCGTGCTCGGCTAGC 692263 37 100.0 38 ..................................... GCCGTATTCGTCTGGGCTTACTTGGATGCTATTGGTAT 692338 37 100.0 35 ..................................... ACCGCTCATCACCCCGGCAGCGTAGGCGCGTGCGT 692410 37 100.0 36 ..................................... TTTCGCAAGTTTTGCCGCCAGTCGGTGATATTTTGC 692483 37 100.0 34 ..................................... ATCAATTCGTCTAAATGAATGTCCTTATTTTGCT 692554 37 100.0 36 ..................................... ACGATATGGGGATGAAAAGTGAAATTGAACAAGCAC 692627 37 100.0 35 ..................................... AATGTAACTCATGCGATTGGTCTGGCGATAGTGAT 692699 37 100.0 34 ..................................... ATCAATTCGTCTAAATGAATGTCCTTATTTTGCT 692770 37 100.0 33 ..................................... ACACCAAAGCTGGGGAATACGCGTGGAAGGACC 692840 37 100.0 33 ..................................... ATCCAAAGCGAATCAGTGAATATTCCCAAGGAT 692910 37 100.0 33 ..................................... GCCGGTGCCGAGGTATTTAACGGTATTGTCGGC 692980 37 100.0 34 ..................................... AGCGAAAACCCTGAATGAATCAGCGAAGGCGGTG 693051 37 100.0 34 ..................................... CCGGAAAACCAACTGGCTATTTTGGCAGGGTCGA 693122 37 100.0 34 ..................................... AAGCGGGGCTGTACCGAAGTGTGTGAATTCCACA 693193 37 100.0 34 ..................................... AGGGCGCGGGTGGTGCTGGCACTGCAAGAGCGCA 693264 37 100.0 36 ..................................... ACCGCATGGCCCGGTAACACGATGACTGAACACACG 693337 37 100.0 35 ..................................... TTGTACAACGACTTGTGCATCATCATCAGGGTTTC 693409 37 100.0 37 ..................................... ATGAGCATTAATGACACGGGACGGCATTGTTATAAGG 693483 37 100.0 34 ..................................... CCGTGCAAAGTGGAACGTCGCCCCAATCTGGCGA 693554 37 100.0 33 ..................................... AACATCGTATTTTTTACGCCAATAGTCAGGGCC 693624 37 100.0 33 ..................................... TAGCGCTCAACTGGTTGTCACGCAGATAAAAAT 693694 37 100.0 37 ..................................... CTTGATCTCTTGAGCGAACGTCACCGTAATGGCCCCC 693768 37 100.0 35 ..................................... GGCGCGTAGCTCGACCTTGAATCCGTGGTTGTAGT 693840 37 100.0 35 ..................................... ATCGCGGAATGCACGGAGTGCGACTAGATTTGCGT 693912 37 100.0 37 ..................................... ACGGCAGCGCGTGCTGCCCTCTCCAATATGAGTTGGG 693986 37 100.0 33 ..................................... CCTGAAAATTGCGCTGGATGCGCCAGAAATCAC 694056 37 100.0 34 ..................................... AACGCCGTGCCAATCCCGCAGATATAGCGGCGCA 694127 37 100.0 36 ..................................... CTGCAAGAAAAGCTCGTGCCAACTGTCGAGTAATCA 694200 37 100.0 34 ..................................... AAAGAAGCCCGCCCCGTGCGGGCTTGTTTGGTAT 694271 37 100.0 35 ..................................... TGCAACGGCTGAGTTCGGCGAGTCGCTGTATTTGC 694343 37 100.0 35 ..................................... CAGTCATCCATCAGCGTGTTAAAAATCACGGATGC 694415 37 100.0 33 ..................................... ACAATGCCTTTCAGGTGATCAATGACCGCAGGA 694485 37 100.0 36 ..................................... AGATGAAATACTGTCTACTCGTGAAGAGGGTGCAGC 694558 37 100.0 35 ..................................... GCTCTCCACCAATAACCCCACTGTCCAGACCAAAT 694630 37 100.0 35 ..................................... AGCAAGACACCGCCACCGCCACCAAAGCGGGTAGA 694702 37 100.0 33 ..................................... CAGCCTTGGGTGCTTGGTTAGAGTCGCGCCTGC 694772 37 100.0 33 ..................................... TCCGCTTCCGCGCCTGCAAGCCCTCCGTCCAGC 694842 37 100.0 35 ..................................... CATGAGCCATTGCAGGCTTTCAGCGGCGTATTGCT 694914 37 100.0 34 ..................................... GCGCTGCATCTTGTTCATCGGCACGACCTGACCC 694985 37 100.0 36 ..................................... ATGTGCTGGTCAAAGGTGAAGATCAGCGGCTTGTCA 695058 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 42 37 100.0 35 ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Left flank : AAGCGCTTGCGGCGCGTGGCGAAGGTTTGCCAGAATTATGGGCAGCGGGTGCAGAAGTCGGTGTTTGAGTGCAAGGTGGATGCGATGACGCTGGAAATTTTGCAGGATGCGCTGCTGAAGGAAATCAGTCTGACGGAGGATAATTTGCGGATTTACCGTTTGACTGAGCCGCTGACCAAGAACGTGAAGGAGTTTGGTAAGTTTCGGGCGACTGACTTTGATGCGCCGTTGATTTTGTGATTGGCGCTTGTGGAAATGCGTTGTAGATCATAATCCTAGCGCACAACTTGTGAGTTTATGGTATAATTGGCGCTGACGTGTATTGCGCGAACCCGTAGCGATGGCGAATTCGCTGGGGGTTTCGCGGGATCATAACTTGTTGATTTTACTTGGAATGAAACCATGAACCCTCGCCGCGACCCATCCCTCTCATCCCCGCCTGATCGGTTCGCGCAATCTCGTCAAAAATCTCTTATATTTTATGCCCTTACACTTGGGCG # Right flank : CACCACGGGGGTGGTAATTGATCACATCCCCACCCCTTGCGGTAAAGCGGGCAGGGCAAAGCCAGCGCGGGCAGCGGTAATAACACTGGCAAGATAAGCCAAGGCAGACTGTCCACGTTTGCGGCAAGTACCGATGATGCTGGCCAGCATGGCAAACGCACGGCTCCCCGTAGCACTCTTTGTGCCATGGTTGGTTTTGCGCAGGATCACCCAATGGCGCAACGCCCGCTCAGCCTCATTATTGGTCAAGGGAAGCCACGGGTGGTCAAGGATTCGGAAAATGGCATCCCAATCATTGATGAACTCTTTCGCCAGTGCCGCCGTCTTGTCATGGGCAGATACGGCATGGATCAAGCATAATGCCCTGAATTCCAGGAGTTTTGCCTGATGGCGTTGACGGATCACGTCGGTTTGCGTCCCCACCGTGCCGCCTGCTGCCCGCCAAGCGTAAATGTCGTCCTGTAATACCCTCAGCCAAGCGAGGGTGAAGTTGCCAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 2 696778-701486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 696778 37 100.0 35 ..................................... TCCCGCAGTTGGGTACACCAACCGCACGGCAGGAT 696850 37 100.0 34 ..................................... AGGGGAAAGCCCAAAATGCTTGGCAAGATCGTCC 696921 37 100.0 35 ..................................... TTCGCCGTCCATGCCCTCGAATTGCAGTGCGTACA 696993 37 100.0 34 ..................................... CCCCGGTGCGTTGGCACTGGTCGAGCAAATGCAG 697064 37 100.0 35 ..................................... GCGGTCGGCTTTTTCCATCTCTGCCGCCAGCTCAT 697136 37 100.0 35 ..................................... GACCGCCACCAAACCCACCCAAAATACAACGACTA 697208 37 100.0 36 ..................................... AACGTAGTCATCAACCTTGATGAGCGCGTCAGAGGC 697281 37 100.0 37 ..................................... GATAATATCGACTTCCACAGCGTCCATTTCAACGGCG 697355 37 100.0 36 ..................................... CGAATGAAACAGGTGCAATAGGTCTTCGGCTGGTAC 697428 37 100.0 35 ..................................... ACGCACCAGATCAGCATTGCTACGCTTGCCAATGC 697500 37 100.0 35 ..................................... TAAAGCCGCCTGCTATGGGATAATGGCTAACGTGG 697572 37 100.0 35 ..................................... AACTGTAACAACGCTTACCGTCAAGCCTGACAAGC 697644 37 100.0 36 ..................................... AGTTTCAGATTGGGTAGAGAAAAATTAAACGGTAGT 697717 37 100.0 35 ..................................... AGCGACTCAGTGGTCGAATCAATGGTTGCTTGATA 697789 37 100.0 36 ..................................... ATAAATGGAACTCGGACATGCGCTTGTGCATCCAAG 697862 37 100.0 35 ..................................... CGTGCTGACCTTGGTTGGCGGCCCCGTGGGTGCGT 697934 37 100.0 35 ..................................... CGTGCTGACCTTGGTTGGCGGCCCCGTGGGTGCGT 698006 37 100.0 33 ..................................... CCAGTGAGCAAGTTTGTTTGATTCAAAAATCTC 698076 37 100.0 38 ..................................... CCCAGCGTTTCAGCGCATACCCAGCATTCTGTGTACAC 698151 37 100.0 36 ..................................... TGACTGCCTTACGCACCTTGGGTATGCGCCTGCGAG 698224 37 100.0 35 ..................................... CACCAGCTTAGTGGCATGTGCAGGCGCTCTTACGG 698296 37 100.0 34 ..................................... AACATATCCCCTTTGCGCTGGAACATGGCACCGT 698367 37 100.0 34 ..................................... AGGTTTAATGGTTTTTTGTACTATGCCGTGTTCA 698438 37 100.0 33 ..................................... CGTGGGAAAATGATCGAAGGATCAAAGCTCTGC 698508 37 100.0 35 ..................................... CCTGTGCCCATCGGTAATGCGGTGATCGGGATGGC 698580 37 100.0 35 ..................................... TGATCGCCGTAGCAACCTTGGTTGTGGTTGGTCTG 698652 37 100.0 33 ..................................... ATCCCATGCTGCTTCCATTCGTGCTTTGTCTGC 698722 37 100.0 35 ..................................... TTCGGTGACGTTGATAACGATATGTCGCTAGATAC 698794 37 100.0 34 ..................................... GTTCGTTGTCTGTGAGACATTAGGTTCAGGCGAC 698865 37 100.0 34 ..................................... CCGTTTTGTAAGCGAAACGTTATCAGCGGTCTGC 698936 37 100.0 36 ..................................... AGAGGATCACGTAATAACCCCGGAACGTAACAGTAC 699009 37 100.0 35 ..................................... GAGCGTGCGATATTGGTGCGCAACAAGATAAGAGA 699081 37 100.0 35 ..................................... CTCAGTAATCGCCCGCTCTTGATTGTGCCAGCCTA 699153 37 100.0 36 ..................................... TTGAGTTTGCCTAAAGCAAACCGCGATAAAACCACC 699226 37 100.0 33 ..................................... CGACTGGTTAAGTTGTGGCTTGCGTGTAGCAGG 699296 37 100.0 34 ..................................... ACCGTCTTTGCTGTATCACCACGGCTTACCCTAC 699367 37 100.0 35 ..................................... ACGCAGCAGCAGTGCCTTCCCCGTTGCGTTATGCA 699439 37 100.0 35 ..................................... TTTTTGAATTGATTCTTTAGTCATCAATTCTTTTA 699511 37 100.0 34 ..................................... ACTATTACAACGCTTCACAGCGATGGCAAGTTAC 699582 37 100.0 35 ..................................... ACCTGTGCATACCGAGGGTATCCGATTGCGCCAAT 699654 37 100.0 35 ..................................... TGCCATGATCTGGCTAAGTCCGCCCACGCCTTGTT 699726 37 100.0 34 ..................................... AATGGCGCGATGTGGATGATGTTGGTGTTGGGCG 699797 37 100.0 36 ..................................... GACTGTAGACTGCATTGCAGCCAGCTTGGATTTAAG 699870 37 100.0 34 ..................................... ATGCCAACATAGCGACAAACGCCACGCTAATGAA 699941 37 100.0 36 ..................................... CAGCAAATCCAGCAGCCCAGCCGTTACATAGCCAAT 700014 37 100.0 36 ..................................... CTCGGAATACTCAATCCACACATCACCATGACAAGG 700087 37 100.0 34 ..................................... TGGAGTACGGAGGAACTTGCCTACTCCATCCTCA 700158 37 100.0 36 ..................................... ATCTGTGCATAGCATATATGCTCTAAGGAACATAAT 700231 37 100.0 34 ..................................... ACCTAGCATACACAGATTAGCATATTCGCGCCAC 700302 37 100.0 35 ..................................... AACTGGCATGAGCTGCAAGGTGTACGTGTAAATAC 700374 37 100.0 35 ..................................... ATATTTTGGGATATTCGCGACTGCTCACAATGGTT 700446 37 100.0 35 ..................................... CGTAAGTGGACAACCGCACGTCATACGACATACTA 700518 37 100.0 33 ..................................... TTCCATCGCCTGCTGCGCCACGGCTGCTTTAAC 700588 37 100.0 36 ..................................... ACAATCTGTGGCATTGGCATTGCTTGCCATAATCGC 700661 37 100.0 33 ..................................... ACCCTGAGAGTGTTCTTTAAACCGAGGACTACG 700731 37 100.0 36 ..................................... CTATCCCAACACTCGCTAAACGTTGGGCAATAAACC 700804 37 100.0 34 ..................................... GTTAACACGGATGGCACACTCTCAAAACTGGTAC 700875 37 100.0 33 ..................................... ACCCTGAGAGTGTTCTTTAAACCGAGGACTACG 700945 37 100.0 36 ..................................... ACCTGCGAGGGGTTAATTTATGAGCATGAAAACCGA 701018 37 100.0 34 ..................................... TCCGTATATGCGACGTTCTCCGAGCCATAATACT 701089 37 100.0 36 ..................................... AAGGGTACAACGTATTGACCGTTAGACATTGGCAAG 701162 37 100.0 34 ..................................... CACTTATCCATACACATACACCTCAGGTAGTACC 701233 37 100.0 36 ..................................... AGGGTCAAACCGTTGCGCTGGCGTTATCCCTAGCTC 701306 37 100.0 35 ..................................... ACCAGTAACCAACGGCGGATTTGGTCAATCGGCGG 701378 37 100.0 35 ..................................... TTTGAGAAAATACCAATACCGGTATCATCGTTCTC 701450 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 66 37 100.0 35 ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Left flank : CCAGGGACCTGCCACAGGCTTCACATCGGCTGGGGTAATGGTGTTCGTCTGCATTGATGGGCGGATGCCATACCCGACCATAACCCGGTGCGCCGGGTTGTTTACCCGCTTTGCGTTTGGCTGGTTGGGCTGGCTTTGTGCCCGCCACAGCTTCTGGTTCCGGGGTTGGCTTTCCTCTGGCTGCACCCACCCCTTCTGTTTCGGGCAAAGCCACCGTTTTGGGTGACGTTTCCCACGGGAAACCGCTGCTGGGTGGTTTGGAGGAGTTGTTGGAGTTTTGGTTGATCTGTTCCCGCGCTTCTTTCAGGTCATGCAACAACTTGGTCGACAGGTGCAGCAGTTCCTCCGGCGTGAGCTTGGCAAGGTACTGGCTGTTAAGCTGTTTGAGGCTGTGGTCTTTCAGTTGTTGGGTCATCGGGGGAGTGTCGCAAATTTAGTGCGTTTGGGTAAGGGGGGACTGTTCAGTTACCGGGGGTGGTGTTGGCAGAGGTTGCCTTGCG # Right flank : CGTTGGTCGGGAGCAAAATCAACTCACCTGCAATGCCCGCTCCAACGCTTGCCGGATCTGTGTTTGTTGTACTTCATCGGTGATCATGTAGCAATCCCGCGTGGTGACGTAGAAAATATCCTGCGCCTGTTCCCCCAGCGTATTAATGCGAGCGTTATGCACCCGTATACCCAACCCATCCATCGCTTCGCCGAGTCGTGAGAGCAGCCCCGGCATATCGCCCGTATTGATTTCAATCAGCGTCAGGTTTTTTTCTGGTTGCTGGCTGAAGTGAATGCGCGTCGCTACGTCGAAATTGCGCAAAATGCGCGGCTTGCGGTGCGTTGAGTAATAGGGTTTTTCGCGCTCCAAATTTTCCGTCATGGTTTGGATAATGTGCTGCTGATCGGTATCGCTGATAATCAATTGGTTGTCAGAGCCAAGGATGTGCAGGGTATACAGGTCGAAGCCGTCCGTGGTCGACACAATCCGCGCCTGCACAACGTTGAGGTTAAGCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTTATTAGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 1004977-1005936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1004977 37 100.0 34 ..................................... ATTGTTTCATGGACGCATGTACATAACGCAATGC 1005048 37 100.0 35 ..................................... AAACAATATGGTATGCTACCAACCAACACACTAAT 1005120 37 100.0 33 ..................................... GCGTCAGTGTGGTTGAATACAGCACCAGGTACA 1005190 37 100.0 32 ..................................... TCAAATTGCTGAGCAAATTGCATTTGTGAATT 1005259 37 100.0 34 ..................................... TCTAATGTCTGAAGCAATAGGTAATCAAAACCTA 1005330 37 100.0 33 ..................................... GGATCGAGAAGCTGTTTGAGATACCGCTCTTCA 1005400 37 100.0 35 ..................................... GCCAGGATAACTCCCAGTAACACCGCGTCGTCCGC 1005472 37 100.0 35 ..................................... GTTTGTTATTCACCCAATGCGACTCGTGTTTGGGG 1005544 37 100.0 33 ..................................... CCGGTACACGAAAGCTCCCTATCTTTATTCCTC 1005614 37 100.0 34 ..................................... GTGAATTGGAGATCCACTTCGGGAAGAAGATGGT 1005685 37 100.0 35 ..................................... ACTTAGAACCGTGGAACGATTGAGTTATATCCTGC 1005757 37 100.0 33 ..................................... TCAATGATTCTCTTGCATACGTGCGAAAACTAG 1005827 37 100.0 33 ..................................... TGCCTTGTATTTCGAGTTCCATTCAGCCGCTAC 1005897 37 91.9 0 ............................T....T..A | G,A,C [1005927,1005929,1005931] ========== ====== ====== ====== ===================================== =================================== ================== 14 37 99.4 34 GTTTGAATACCACCCCCAAATGACGGGGGACTACAAC # Left flank : GCTGTGAGCCAATCCATCATGGAATTGCTGGAGCGCGAGGGGTTCATCCTCAAGTGGGAAATGAATAGCCACCACCAATTGTGTAATGCCACGATTGAATCGCGTGTTGTCCATCATTTGGGCGATAAAACATTTCCACTGAAAGCGGACAAGCGAGCGTTTTGTCGCATCACCGAAAGTTTGCACTCTGATGCATTTGTCAAGATGTTAGCAGCCGCGTTTGGCGGTGCGGCACATCCGAATCAAGACATCGGCACACTGGATTTGCAAACGGTGAATTGGGAAGGAGCGAAAGCAAAATGGGCGGGTAGTCAGTGAATGGCATTTGCTGTAGAGTGCGGCTTGCATGTTAGATGCTGAGGTGGCTTTTTAGGCAACATGCAGATTGTTTTTCGCACAAAAAGTACCATTGCTAATGCTAACTTCTAAATGCCATTTTGATGTTAAAATTTATACACCCCAAGCTGTTGAAACTAAAACGTTTCTGACGAACAAGCGGG # Right flank : AATAGGGAAATCTCCCTTCCCGCCAAAACCTGCTAAACTTCGTTTTTTGTTCGGCACGAGCTTGCACACCCCATGGAAAAATTCATCCGCATTCGCGGCGCACGCACCCACAACCTGAAAAACATCGACCTTGACCTGCCGCGTGACAAGCTGATCGTGATCACGGGCTTGTCGGGTTCGGGCAAGTCGTCGCTGGCGTTTGACACGATCTTTGCGGAAGGGCAGCGGCGTTACGTCGAGTCGCTGTCCGCCTACGCCCGCCAGTTTTTGTCGATGATGGAAAAGCCGGATATTGACCACATCGAAGGGCTTTCCCCGGCGATCTCCATCGAGCAGAAAACCACCTCGCACAACCCGCGTTCCACCGTCGGCACGATCACCGAGATTTACGACTACCTGCGCCTGCTGTATGCGCGGGCGGGTGTGCCGCGTTGCCCGACGCATCACGTTGATTTGCAAGTGCAAACCGTCAGTCAGATGGTCGATCAGGTGTTAAGTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATACCACCCCCAAATGACGGGGGACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.80,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1195235-1199441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================= ================== 1195235 28 89.3 129 ...............A........T..G CTTTGTTTTGCTCGCTCTTTAAAAATTTATTAAAATCAATAAGTTACAACGGGTCGATTTTTGATTGGTTAAAACGCCAAAAAATCACTAACTACCTGTTGTAGCTTATGTTTTATTGTTTATACTCCT 1195392 28 100.0 32 ............................ TTATTTGCTGGTTTGTTTTGCCACTGGTGCGC 1195452 28 100.0 32 ............................ GATGACATGAGCCACTGCAAGGCGCTGGACGA 1195512 28 100.0 32 ............................ GGAACTGTTCAAGGCTGGAAAGCAGCGCGTAT 1195572 28 100.0 32 ............................ TAGTATTAAGTTAATGGCAGGTAGCATTCTAA 1195632 28 100.0 32 ............................ AACGTGGTCTACCATGATGCGCTTAACGCCTT 1195692 28 100.0 32 ............................ TATCACAATACCGTAAGATTGCCCAAATCCAA 1195752 28 100.0 32 ............................ TCAAGAACCTTGATAGCAAGCCCGACATCTCC 1195812 28 100.0 32 ............................ CTTTTAACGGCTTTTGGCGGCAACAATGCAGA 1195872 28 100.0 32 ............................ AGTTTTAACAGCCGCCTTGCCAAACAGGGCGA 1195932 28 100.0 32 ............................ ATTGATCAGCAAAAACTAGCACGGATTCGGAA 1195992 28 100.0 32 ............................ ATGTCATCCACCGCGTGATACTGCGCCCATAC 1196052 28 100.0 32 ............................ TGCCGCAGGTTCTGGTGAACCTCCACGGGCTT 1196112 28 100.0 32 ............................ TGTTACTGCTGGTGACACAGTTCTTGTACGTC 1196172 28 100.0 32 ............................ TTGAGCATTCTTGATTCCGCACCTTCCTCAAC 1196232 28 100.0 32 ............................ ATTTTTCAATAGCGATAGGTGAGGCTAGGTAA 1196292 28 100.0 32 ............................ TCTTGCCAGATTGCCGCGCCACCCGCTTTCCT 1196352 28 100.0 32 ............................ GATGGGTCAATTGGTGACAGACTTTGCTCATT 1196412 28 100.0 32 ............................ AGTCAGCCGCGATCAACACGGGCGACCGTTCA 1196472 28 100.0 32 ............................ TCTGGGCGACTGGGCAAAAGCAAAAGCAGCGT 1196532 28 100.0 33 ............................ GTAGCGACCAGTCCAGCAAGGTCATCAGGTGGC 1196593 28 100.0 32 ............................ GAATGTGGCAGCAGTAAACGTACTGATGTTAG 1196653 28 100.0 32 ............................ GTTGACTCTGTGACCGTAACGAATGCTAAGCC 1196713 28 100.0 32 ............................ AGTAATTTACACAGGCAACTCCCGACCAACTA 1196773 28 100.0 32 ............................ GTCGACTTGCTTTTGTGACAAAGCACCGTTGA 1196833 28 100.0 32 ............................ AAGGTTGGCTAGTTCCTCGCGATGGCGGCATA 1196893 28 100.0 32 ............................ GACACACAAGGGCGTGACTTCACTTTACGACT 1196953 28 100.0 32 ............................ TTTATTCGCTTTCGATAAGGCTATAAAACTGC 1197013 28 100.0 32 ............................ TTTGTGAAGGTGCATTTGCAGGCTGTTGGCGC 1197073 28 100.0 32 ............................ ATCGGCACGGCGATGCAACCCGGCACGGTCAA 1197133 28 100.0 32 ............................ GCCACCGACACCACCCCGCGCCGCTTTCTCGA 1197193 28 100.0 32 ............................ GTTCATGGTTGAAAAGTGATGCCGTACTGCAA 1197253 28 100.0 32 ............................ ATAGGTATTAGCAGCTATCCCGTATTTAGTGC 1197313 28 100.0 32 ............................ ATTGCCGCTAAACTCGCCTGTTGCGCTGCCGG 1197373 28 100.0 32 ............................ GGATTTCGTGAACTTTGTGGGCGGGTTCATAG 1197433 28 100.0 32 ............................ TAGTTCTACGCAGCTACACGCCGGAAAACGAA 1197493 28 100.0 32 ............................ TGTTCAGGGTCTAAGCCATCCCACTGCTTTAA 1197553 28 100.0 32 ............................ TGATGATGAAGAGATTGAAGAGGCCAAGGCTA 1197613 28 100.0 32 ............................ AATACAGCGACGAAACACGACTGGCAGCAAAA 1197673 28 100.0 32 ............................ TACCTCACAGGATTGGTAGCGTGAAAGTTATT 1197733 28 100.0 32 ............................ TAATATTTGCAATTGGAGACTAACCATGACCG 1197793 28 100.0 32 ............................ TCATCACTCATACGCGCCAACGTCGCATTTTC 1197853 28 100.0 32 ............................ ATAACGCACGGTTTCGCGGGGTGCTTGCCATT 1197913 28 100.0 32 ............................ ATTTGGCGTAGCAGCACACCACCGATGGTTTT 1197973 28 100.0 32 ............................ TTCAAATCCCCCGTAGAACGCAGAGTCGCAGT 1198033 28 100.0 32 ............................ TTAAGAGCACGTTCCGCTTCCGACGGTTTGAA 1198093 28 100.0 32 ............................ AATCCATCGAATACAAAGGCAAGCCCGTTGAC 1198153 28 100.0 32 ............................ TGACAAGCTTGCCAAACTGGACTTTCCAGACA 1198213 28 100.0 32 ............................ TGTCATCCTGACAGACCCCTAAAGCGCATAAC 1198273 28 100.0 32 ............................ ACTTGGTTGGTGTCGTTGCAGGTGGTGCAGGA 1198333 28 100.0 32 ............................ AAGCGGCGCATCGAGCCACTGCACCGTCCAGC 1198393 28 100.0 32 ............................ ATTGCTTTAGAAAAGTTTGCTTGCCTGTCTGG 1198453 28 100.0 33 ............................ GGTGCATCGGGTTGTGTCGTGGGGTAGGGTCAT 1198514 28 100.0 32 ............................ AGAGGCGGACATGAATCAGCAATGCGTGGTTG 1198574 28 100.0 32 ............................ ATCCTCAACCAAGCCCGCATCCTAGCCGCCGA 1198634 28 100.0 32 ............................ ATTCAGTGACCTCCTTCTTTTCGCCTGTGTTT 1198694 28 100.0 32 ............................ GTCAAAACTTCCCGCGCATGATCTTTACTTGC 1198754 28 100.0 32 ............................ GTTAATTGGATCATCATGCAGTTGCTTGGCGA 1198814 28 100.0 32 ............................ AATGCCGTTAGTTGTTGCACTGGATTGAACCA 1198874 28 100.0 32 ............................ TTTTACCGGCTCGGACACAACGCCATCTGCAA 1198934 28 100.0 32 ............................ TTATAGAGCCTTGGAAGTTCGTGACGATTTCC 1198994 28 100.0 32 ............................ AGATGAATCTTGTACGCAGCAGCTAACTGGGC 1199054 28 100.0 32 ............................ CGCGCTGATGTGCTAGCACTGTGGGGGCAGGG 1199114 28 100.0 32 ............................ GAAGACGCAGACCGCCAAGAACTGTCCGCCTT 1199174 28 100.0 32 ............................ TACTCACCCGACTACTACACCGCACTCGGTTT 1199234 28 100.0 32 ............................ CACTGCCGTAGCCAAATTAATCAGATCGAACT 1199294 28 100.0 32 ............................ ATCAGATGATGGATTCGCACGATGCAGTTATT 1199354 28 100.0 32 ............................ AGAAAACCGTAACTGATTCCATGAGCAAACAA 1199414 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================================================================= ================== 69 28 99.8 33 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : AAGGTTTATACAAAACTGCATAAGGCTTTGTACACACTCCGGTCAACGACTATAGGTATTAGTTTTCCTCAGCGAAAAATAGTGCTTGGCAAGTTGTTGAGAATACATGGCTCCGAAAGTGCTTTAAATAGTTTGGAGGAAATGAACTGGCTGGGTGGCTTGATCGGGTATTGCGAGGTATCTAAGATACAGTGCATACCTGCTAATGTTCAGTATCAAGTTGTTTCTCGAAAGCAGTCAACAATGACGCAGGCTAAATTGAAGCGGCTTGTTAAACGTAGTGAGATAGGTGAGTTAGAGATAAAACAGTACAAGGCAAAAATGTTTTCTAAAGGGCTGGATGCACCCTACCTTGAACTGGAAAGTGGCTCAAGTGGGCATAGCTATCGGCGGTATATCGTTTTTAGTGAATTGTTCGACCAGCCAGTATCGGGTGATTTTGATCAATTCGGATTAAGTAAGAACGCTACTGTACCAGTGTTTTGACTGTTTATGGTTGT # Right flank : AAAGCCGTTAAGCATTGTGTGCTAAACTGTTGCCTAATCAATGCATTTACCTTCAAGCGAGAAAAGGATGAAAATCCCCTACGGCATCAGCAACTTCAAAGACCTGATTACTGGCGGCTACGTCTACATCGACAAGACGGATTACATCGCCAAGCTGGAAGAAGCAGGCAAATACCACATCCTGCTGCGTCCGCGCCGTTTCGGCAAAAGCCTGATGCTCTCCGCACTGGAGTATTATTACGACATCGGCAGCAAGACCGACTTTGATGCAATATTTTCCAAACTTTACATCGGCAAGCATCCCACGCCACTACAAAGCAGCTACCAAGTGTTGTTCATGGAATTCAGCGGCATCGAAACCGGCAGCCACGAACAAATACTCAGCGGCTTCAATGTCAACGTCAACATTTACTTGCAAGCCTTCCTGAGGCGTTACGGTTATGGGGCAGACGCCATTGCAGGGCTTGCGGACTGCCCCGCCCCTGCTGACAAGCTGAAAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1405365-1403808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1405364 35 100.0 33 ................................... AACATATCACCATTGGCGACGTGTTTGCAATCC 1405296 35 100.0 35 ................................... GAATCAGTTTCGGGGCTACTTTTACAGCTATCACC 1405226 35 100.0 32 ................................... GACTCAAAAGCTTCTTTAGTTCGTGGGTATGC 1405159 35 100.0 38 ................................... ATTGTCCCATATAAGGCGACCTAACAAAGGTGCTTCTG 1405086 35 100.0 33 ................................... TTGAACTAGATGATAGCTGTACCATTTTTCGTA 1405018 35 100.0 33 ................................... GCAGGCGCGGAAAGACGAACAACGCGAACCGGG 1404950 35 100.0 33 ................................... ACCAGGTTTATATGCATCAGTCATAGCAGTTCT 1404882 35 100.0 35 ................................... CGATGAATGGCACCACTCAATTTTCCGGCTTCAAT 1404812 35 97.1 34 ...............G................... AACATCCGCATTGATAGCCGCACGACTGCACCGA 1404743 35 97.1 38 ...............G................... GCTACGTTGCCAGACAGAGTATTGCTGCCTGCGATATT 1404670 35 94.3 33 ........A....................C..... CCAAATACTGATTGCAACTGTAAACCTCACCGG 1404602 35 97.1 32 .............T..................... CCCGGGCATGGCGTGTGTTTTTGGTGGCTGGT 1404535 35 100.0 36 ................................... TTGTAAAACTCCTTGCGATCGATCATAAAAAAATCC 1404464 35 97.1 36 ........A.......................... TTGTACTGAATGGGATTAAGCGACGAACCCGGTTGG 1404393 35 100.0 34 ................................... TGTAAGAAAATTTCCATTCAAACGAACCATTTGA 1404324 35 100.0 33 ................................... CAACCGCACAGTTTCCGAAGTGCGCCACGCTTT 1404256 35 100.0 35 ................................... CACTACGCCAGCGCCAGTGGATTGCACGCCGAGTT 1404186 35 100.0 33 ................................... TAGTTACCGTTTTCCTTCACGCACTCTGGGTTC 1404118 35 97.1 31 ..............................A.... GCCTTCTCTACAAAAACCTCTTGAACCAAGA 1404052 35 100.0 34 ................................... ATATGCACCTCCAGTGCAAAATATTGAAAAACAC 1403983 35 100.0 35 ................................... ATTTGCGTTTGCTTGCCCTTGAACGTGTCAGAATT 1403913 35 100.0 36 ................................... GCATTACTTCATCTGCCTCACTGAGTTTACTAATCA 1403842 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 23 35 99.1 34 GTTGCAGGGGCGGGATGCCGTTTAGGCTGTGAGAC # Left flank : GATGGAACCGTTCCGGCATTTGGTGGAGCGTAGCGCGTTGTCGATGGTGGCACGGGGGGAGATTGTGGCGACTGATTTTCGGTATACGCCGGAGCGGGCGTGTTTGATTAGCGATGCGGCGCGGCGTAAGTTTTTGGCGTTGTTGATGCAGGGTTGGGAGAACAAGCTGACGGCGCGGGGGGATGATGCGGCGAAGAGTTGGTTGGATCAGTTGCGGGCGCAGGCGTTGTCGTTGAAGGGGTTTGTGACGAAGGGTGAGGCTTTTCATGCGTTTCGGGCGCGGTGATGGTATAATTTTGTTCCCGCTCCTGTAACGTGAGGGGGTTGGTGGTGGCGTAATGCGCTAATCATAAACGATTCACCAACCCTTTGTGATCAATGACTTGAGCATTTGCAACGAGTGAAAATGAATGCTGTTTAACCGCTTTTCTGTCCGTACCGCTGAGGTTCACCAAATCGCCGTCCAAGGCATTGATTCTATTGGTGGAAAATGGGGTGCT # Right flank : CGTCACCTTCTTCACTCCGAACCTCTCCCCCATCCTCAACCCCTTCCCCCGCAAGGGGTGAAGGGGCTAAGAAGTGTCGTTTTTCACTTAACAACGCACAGGGGTTTCCTCTTGCTCCCTTCACCCCTTGCGGGGGAAGGGTCGGGGATGGGGGGAAACGGCGAAGCCGCAACTGGTGTAGATACCCATACCGATAAAAAGTGCTACACTATGTGCACACAACCAACCGAGAGGTGTTACGATGCAAACTGTCGAAGTCTACACAGCGCGTGATTTGCGTAACCGTTCCGGCGAACTGCTCAAACACGCCACCGACGGCAATATCAGCATTATCACCAAGCACGGCAAACCCTCCATCTTAGCGATTCCGTTTGATGCCCACCTGCTACAACACGGCATTCACCGCGTCATCGCCCTGCACATGGTGCAATCTCGCCAATTGACACTGGCACAAGCAGCAAAGCTAGCAGACATGAATTTGTCATCCTTCATCGAACTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGGGCGGGATGCCGTTTAGGCTGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 1418538-1421008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1418538 36 100.0 34 .................................... TGTTTCTGCCCATCTTTTGCCCAATGATGTCCGC 1418608 36 100.0 35 .................................... AATATTCTGGCCAACAATAGTGGCATTCCATTTTT 1418679 36 100.0 35 .................................... AATATTCTGGCCAACAATAGTGGCATTCCATTTTT 1418750 36 100.0 33 .................................... GATGGTAACCAGCATGCAAACGTTGGAGGGGGA 1418819 36 100.0 34 .................................... GCGGCTGGTGGTTCTTCAGCAAAAGCTACACCAG 1418889 36 100.0 34 .................................... TGGAATGTATTAGTCCAGTCCGCAGAATCCGCGG 1418959 36 100.0 34 .................................... AGAACATTCTGCAAATGCGGAAAAACTCATAGCT 1419029 36 100.0 33 .................................... GGGGAATTTCGCAGTATTAGTCCAATCTGCCCC 1419098 36 100.0 33 .................................... CAGCAAAAGCTGCAGTAGAAGTTAAAGTCAACG 1419167 36 100.0 34 .................................... TAGACCAGCAGACAGAAGTATGGACGCGGACAGG 1419237 36 100.0 33 .................................... AAAATAGTCTCAACCGTTCCATCAATAGGTTGA 1419306 36 100.0 34 .................................... CCAGCCAGTTTGGCTGATTTCTCTTCAGGTTTTT 1419376 36 100.0 33 .................................... TCACGCGCCAGAACATCATCGCCTTCTAATTTG 1419445 36 100.0 34 .................................... AAAACACTTTTTTTGTTCATGACAATACTACCTT 1419515 36 100.0 34 .................................... ATCCAGACAGGACACTTCATCCTGTGTGTAGATC 1419585 36 100.0 31 .................................... ATATAAGGGTATTTTTTCATGAATTCTATCA 1419652 36 100.0 34 .................................... AATTTCTTTCAGCTCTGGTTTTAACTTCAGAGCT 1419722 36 100.0 34 .................................... TGCCCATTGCTGAGCATAAGCGACTGCCTTATTT 1419792 36 100.0 33 .................................... AGAGAAATTGTCTCGTAGATAAGATCCTACGAG 1419861 36 100.0 34 .................................... GCCTAACGGCATTACCATATATGCCGGATTTGCT 1419931 36 100.0 33 .................................... AGAGAAATTGTCTCGTAGATAAGATCCTACGAG 1420000 36 100.0 34 .................................... GCCTAACGGCATTACCATATATGCCGGATTTGCT 1420070 36 100.0 35 .................................... GTTTACATTCTAGCCTTCCCCACTGGGGTTGGGCT 1420141 36 100.0 33 .................................... CGGGTTCATCGGCTTGCCATTTGAAGCGGCTTG 1420210 36 100.0 31 .................................... CACTACTATTTTGTATTAACTTACCTGTTGC 1420277 36 100.0 32 .................................... TACAGTATAATCTGTATACAGCACTCCCCAAG 1420345 36 100.0 32 .................................... TACAGTATAATCTGTATACAGCACTCCCCAAG 1420413 36 100.0 35 .................................... GATGGAAAATAGTGCTACTACTAAGAGTAGCACTA 1420484 36 100.0 34 .................................... CCTAGTATGATTATCTTTTTCATACTTTGCTAAT 1420554 36 100.0 34 .................................... CCATTACGAACGGAACCGGACAGTTCGAGAGATG 1420624 36 100.0 32 .................................... ACAGCAATACTCATACTAAAAAACCCCATATG 1420692 36 100.0 34 .................................... AAGTTCCGATGGAACCTCTGGGGCTGCAGCAAAG 1420762 36 100.0 35 .................................... AGCACGCAATGGCTAGGCCTCTCAACCAGGTTTCC 1420833 36 100.0 34 .................................... GCCCTCCTGGGGCATTTTGTTTTAAAAATTTTAC 1420903 36 100.0 34 .................................... CTACCTTTTACGGTCACATAGTCAGTTTGGATTT 1420973 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 36 36 100.0 34 GTTTAAGCGGTAGCCTGATTTAGAAGGCGTTAAGAC # Left flank : CCCCGTGAAGCAGGAATTCAACACCATGACTACTTTTAATTAGTTATAGGTAGATTTGGGTAGGTTTGAAATAACGGCGCATCACACCAGCTTGCTGGGGAGTGATCGGGGTATTTCACAAGGGGCGATATTGTCGCCGCTGATGTGTAATTTGTACCTGCATGATTTTGACATTGCACTGGAAAAGGCTAATATACCGTTTGTGAGGTATGCGGATGATTTTTTGCTGTTTACCTCCAGTAAAGTACAGGCAGAACAGGCACTGGATTATGTGCGCAGCCTGTTGAAGAAGCTGGATTTGGAATTGAAAGATGAGAAAACCCGTGTGGTGCGTTCCAGCCCTGAAGTCGTGTTCCTTGGAGAGCGACTTCCTGTGCCGAAACGCTGAAAAGCCCTACTGTTTTTATGGTCTTGTGAGGCTAAACGCAACTTACCTTTTTCATGGGGTCGCGAACACCTTCCAACACACTGAATTCAAAAGGAAATTTTCAAACCTCAGG # Right flank : CGGACAATACCACCTGGAATAAATGGATTATTTGTTTAAGCGGTAGCCTGATTTAGAGTAACTGAACAGTCCCCCCTTACCCAAACGCACTAAATTTGCGACACTCCCCCGATGACCCAACAACTGAAAGACCACAGCCTCAAACAGCTTAACAGCCAGTACCTTGCCAAGCTCACGCCGGAGGAACTGCTGCACCTGTCGACCAAGTTGTTGCATGACCTGAAAGAAGCGCGGGAACAGATCAACCAAAACTCCAACAACTCCTCCAAACCACCCAGCAGCGGTTTCCCGTGGGAAACGTCACCCAAAACGGTGGCTTTGCCCGAAACAGAAGGGGTGGGTGCAGCCAGAGGAAAGCCAACCCCGGAACCAGAAGCTGTGGCGGGCACAAAGCCAGCCCAACCAGCCAAACGCAAAGCGGGTAAACAACCCGGCGCACCGGGTTATGGTCGGGTATGGCATCCGCCCATCAATGCAGACGAACACCATTACCCCAGCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGCGGTAGCCTGATTTAGAAGGCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 7 1422758-1424594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPM010000008.1 Thiothrix fructosivorans strain ATCC 49748 Tfr_ch_unt2_linear_1_5Mb_v8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1422758 36 100.0 34 .................................... GCAGCTTTTTCGTCTTTCCCACACCAAAAATCGG 1422828 36 100.0 33 .................................... ACATTGGAATGAATGGTACAATTCCATGGGGTG 1422897 36 100.0 33 .................................... GCTAAAGCTCGCGCTTTATCTACAATTTCTTTT 1422966 36 100.0 33 .................................... CCACACCTCCTTGTGGTTTTTGAAAACCGGTTT 1423035 36 100.0 34 .................................... GCTACAGTGGAAGCAAGAGGCAGACCTGCAACCG 1423105 36 100.0 32 .................................... CATTTTTCAAGTCTTCATCTGAGATGCTGTAC 1423173 36 100.0 34 .................................... GTAATTGCCCCGTCTTTTTCCGTGGTCCCCTCAG 1423243 36 100.0 32 .................................... TTTCGATTTGAGTAGGAGCTGGGGGAGCAAGG 1423311 36 100.0 36 .................................... AGCGATCTACCTGCTCCGCAGGAGGTATAGGTGCCG 1423383 36 100.0 33 .................................... GCAGAAAATGAAATATCATACACTCCGTCAGCC 1423452 36 100.0 35 .................................... AGGGTTAGAAGGGGGGGGTTATTTTTTTGGAGCCG 1423523 36 100.0 33 .................................... ATAGGACTTTTGTTTTTTACACACCATTATTTG 1423592 36 100.0 33 .................................... ATAGGACTTTTGTTTTTTACACACCATTATTTG 1423661 36 100.0 33 .................................... ATAGGACTTTTGTTTTTTACACACCATTATTTG 1423730 36 100.0 33 .................................... TAATTATTATGGTTAATATGCCAATTACTTTTC 1423799 36 100.0 32 .................................... GCTGATTTTTCTTCTGCTTTTTGGTTTTTTTT 1423867 36 100.0 36 .................................... AGCTTGGCCTAACGGCATTACCATATATGCTGGTTG 1423939 36 100.0 34 .................................... TTCATGTCGTTACTCCTTTTTGAGGTTGAAAAAA 1424009 36 100.0 33 .................................... ACATACAGCGGTCTGCTAACGCAGAACCAGAAA 1424078 36 100.0 33 .................................... TATTACTACCGAGACTCCAGAGGGAGGCATAAA 1424147 36 100.0 31 .................................... CCATTTGACTTTCTCCTGTCGTTCAGTCATT 1424214 36 100.0 33 .................................... GTCCTTGAAAAGATTGTCTCTTTAACCCCATCA 1424283 36 100.0 34 .................................... GTTGAATTGCCCGGCAGAAGCCGACCAGAGAGTT 1424353 36 100.0 32 .................................... TTTCGTTTTGCTCAGCAACTTCTTCAACTGCC 1424421 36 100.0 32 .................................... TTTGCATGGATTACCCCTTCTTGTTAAAAAAA 1424489 36 100.0 35 .................................... CAATAATGATTGAGATTATTCCCAATAACATTATG 1424560 35 83.3 0 .........................-.A..ATC.T. | ========== ====== ====== ====== ==================================== ==================================== ================== 27 36 99.4 33 GTTTAAGCGGTAGCCTGATTTAGAAGGCGTTAAGAC # Left flank : GGACGACATTTACGCTTGGCGGGCAGCAGGCGGCACGGTGGGGACGCAAACCGACGTGATCCGTCAACGCCATCAGGCAAAACTCCTGGAATTCAGGGCATTATGCTTGATCCATGCCGTATCTGCCCATGACAAGACGGCGGCACTGGCGAAAGAGTTCATCAATGATTGGGATGCCATTTTCCGAATCCTTGACCACCCGTGGCTTCCCTTGACCAATAATGAGGCTGAGCGGGCGTTGCGCCATTGGGTGATCCTGCGCAAAACCAACCATGGCACAAAGAGTGCTACGGGGAGCCGTGCGTTTGCCATGCTGGCCAGCATCATCGGTACTTGCCGCAAACGTGGACAGTCTGCCTTGGCTTATCTTGCCAGTGTTATTACCGCTGCCCGCGCTGGCTTTGCCCTGCCCGCTTTACCGCAAGGGGTGGGGATGTGATCAATTACGATTTAGAAGGCGTTAAGACGCATTTGCTGCCTCTTGAATCTCGTCAGGTGCG # Right flank : CTTGAGGTTCTGGCTGGGGGGATGCTTCGGAATATGTAGGCTTGCAAGTTATTGTCCTTCGCTGTATTTTGATGTTTTCAGCCTGTCGTTCTGTGCCAAATGAACAAGCAAACCCTTATCGAACAACGCATTTATCGGCTGCATCAGCGGGTCATCGAAAAATTGCAAGCTGACCCAGAGCAGGTGGTGGGTATCGCCCGCGCCAATTTGCAGCGTTACCGCGCCAACAATGGTAATTGGCAGGCTTACACGGATTGGGAGCAAAAGCTTTCCTTACCCGTGACAGACATCATCAACATTCTGGATTCCCACGACGAAAGCGCAGTGCTGGCACGTTCAAACTCCCCCTTTGCCGGATGCCTTTCTGCCCATGAACGCTGGGAAATCCTACGCGAATTCAAGAACACCTATGAAACGTTATGAAATCGAACACTTGATCAGAGCAGCGGGTGCAATCACACAGAGCAATGAAATCATTGTCATTGGCAGCCAGTCGATTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGCGGTAGCCTGATTTAGAAGGCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //