Array 1 88596-87285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYV010000012.1 Escherichia coli strain 53 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88595 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 88534 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 88473 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 88411 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 88350 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 88289 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 88228 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 88167 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 88106 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 88045 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 87984 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 87923 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 87862 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 87801 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 87740 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 87679 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 87618 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 87557 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 87496 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 87435 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 87374 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 87313 28 72.4 0 .AA........C..T....T-.G.....C | C [87288] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86750-87388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYV010000014.1 Escherichia coli strain 53 contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86750 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 86811 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 86872 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 86933 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 86994 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 87055 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 87116 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 87177 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 87238 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 87299 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 87360 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //