Array 1 258723-255824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXE01000004.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N38860 N38860_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 258722 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 258661 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 258600 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 258539 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 258478 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 258417 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 258356 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 258295 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 258234 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 258173 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 258112 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 258051 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 257990 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 257929 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 257868 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 257807 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 257746 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 257685 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 257624 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 257563 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 257502 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 257441 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 257380 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 257319 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 257258 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 257197 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 257136 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 257075 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 257014 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 256953 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 256892 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 256831 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 256770 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 256708 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 256647 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 256586 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 256525 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 256464 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 256403 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 256342 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 256281 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 256219 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 256158 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 256097 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 256036 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 255975 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 255914 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 255853 29 100.0 0 ............................. | A [255826] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 277138-275280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXE01000004.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N38860 N38860_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 277137 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 277076 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 277015 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 276954 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 276893 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 276832 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 276771 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 276710 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 276649 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 276588 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 276527 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 276466 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 276405 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 276344 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 276283 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 276222 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 276161 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 276100 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 276039 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 275978 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 275917 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 275856 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 275795 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 275734 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 275673 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 275612 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 275551 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 275490 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 275429 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 275368 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 275307 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //