Array 1 281804-284235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJM01000003.1 Akkermansia muciniphila strain BIOML-A18 scaffold3_size380597, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 281804 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 281869 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 281934 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 281998 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 282063 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 282127 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 282191 31 96.8 35 ..........G.................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 282257 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 282322 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 282387 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 282451 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 282516 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 282581 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 282646 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 282711 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 282776 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 282841 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 282905 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 282970 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 283035 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 283100 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 283165 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 283230 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 283295 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 283360 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 283425 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 283490 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 283555 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 283620 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 283685 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 283750 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 283815 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 283880 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 283945 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 284010 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 284075 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 284140 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 284205 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 115163-120888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJM01000001.1 Akkermansia muciniphila strain BIOML-A18 scaffold1_size501903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 115163 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 115230 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 115297 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 115364 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 115431 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 115498 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATTTGTGC 115565 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 115632 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 115699 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 115766 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 115832 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 115899 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 115966 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 116033 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 116100 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 116167 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 116234 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 116301 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 116368 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 116434 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 116501 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 116568 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 116635 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 116703 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 116770 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 116837 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 116904 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 116971 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 117038 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 117105 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 117172 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACC 117239 33 97.0 33 ..........C...................... TGAGACGTCATAGTTAACGCCCTGCCACATGTG 117305 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 117372 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 117439 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 117506 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 117573 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 117640 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 117707 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 117774 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 117841 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 117907 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 117974 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 118041 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 118108 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 118176 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 118243 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 118310 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 118378 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 118443 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 118511 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 118577 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 118643 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 118710 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 118777 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 118844 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 118911 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 118978 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 119044 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 119111 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 119178 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 119245 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 119312 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 119379 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 119446 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 119513 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 119580 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 119647 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 119715 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 119782 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 119850 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 119916 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 119983 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 120051 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 120118 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 120185 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 120252 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 120320 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 120387 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 120453 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 120520 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 120587 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 120654 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 120720 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 120787 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [120806] 120856 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 86 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //